Wall clock time and date at job start Mon Mar 30 2020 02:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.46909 * 2 1 4 4 C 1.50702 * 109.47196 * 239.99765 * 2 1 3 5 5 H 1.07998 * 120.00345 * 245.62841 * 4 2 1 6 6 C 1.37884 * 119.99806 * 65.62729 * 4 2 1 7 7 N 1.31513 * 119.99636 * 197.51386 * 6 4 2 8 8 Si 1.86801 * 119.99762 * 17.51860 * 6 4 2 9 9 H 1.48501 * 109.46841 * 179.97438 * 8 6 4 10 10 H 1.48503 * 109.47067 * 299.99487 * 8 6 4 11 11 H 1.48500 * 109.47376 * 59.99990 * 8 6 4 12 12 O 1.45201 * 109.47095 * 120.00009 * 2 1 3 13 13 C 1.34231 * 116.99999 * 270.00007 * 12 2 1 14 14 O 1.20832 * 119.99734 * 359.97438 * 13 12 2 15 15 C 1.50697 * 120.00122 * 180.02562 * 13 12 2 16 16 H 1.08995 * 115.54997 * 325.66843 * 15 13 12 17 17 C 1.52996 * 117.49909 * 111.37953 * 15 13 12 18 18 C 1.53003 * 117.49659 * 180.02562 * 15 13 12 19 19 H 1.08992 * 117.50220 * 0.02562 * 18 15 13 20 20 C 1.52995 * 117.49727 * 145.02542 * 18 15 13 21 21 H 1.09001 * 109.46632 * 66.33979 * 1 2 3 22 22 H 1.09003 * 109.46856 * 186.33851 * 1 2 3 23 23 H 1.08998 * 109.47315 * 306.33917 * 1 2 3 24 24 H 0.96994 * 120.00108 * 354.88055 * 7 6 4 25 25 H 1.08999 * 117.49812 * 214.97949 * 17 15 13 26 26 H 1.09005 * 117.50018 * 359.97438 * 17 15 13 27 27 H 1.08999 * 109.47543 * 59.99230 * 20 18 15 28 28 H 1.09000 * 109.47159 * 179.97438 * 20 18 15 29 29 H 1.09000 * 109.46887 * 299.99300 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.5763 -1.6385 -1.1340 6 6 1.7976 -0.1756 -2.4795 7 7 1.9161 -0.9296 -3.5504 8 14 1.3113 1.6199 -2.6502 9 1 1.1182 1.9459 -4.0861 10 1 0.0454 1.8622 -1.9125 11 1 2.3842 2.4790 -2.0880 12 8 2.0140 -0.6845 1.1856 13 6 2.2172 0.0640 2.2811 14 8 1.9982 1.2519 2.2503 15 6 2.7193 -0.5770 3.5492 16 1 2.3675 -1.5919 3.7341 17 6 4.1373 -0.2263 4.0044 18 6 2.9302 0.3296 4.7635 19 1 2.7053 1.3895 4.6454 20 6 2.6322 -0.2582 6.1442 21 1 -0.3633 0.4124 -0.9413 22 1 -0.3633 -1.0214 0.1135 23 1 -0.3634 0.6089 0.8278 24 1 2.2402 -1.8402 -3.4690 25 1 4.7187 -1.0107 4.4889 26 1 4.7071 0.4677 3.3865 27 1 3.2719 -1.1238 6.3164 28 1 2.8257 0.4940 6.9089 29 1 1.5870 -0.5639 6.1911 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379321727.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:53 Heat of formation + Delta-G solvation = -76.501097 kcal Electronic energy + Delta-G solvation = -12583.461953 eV Core-core repulsion = 10279.243465 eV Total energy + Delta-G solvation = -2304.218489 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.91660 -37.38602 -35.51813 -33.22009 -30.45391 -28.83019 -25.10569 -24.42453 -21.39034 -20.44689 -19.41137 -17.78273 -17.05142 -15.97265 -15.24909 -14.16968 -14.04697 -13.62685 -13.18521 -12.86057 -12.68036 -12.27595 -12.07758 -11.67913 -11.53381 -11.39895 -10.56595 -10.37395 -10.13829 -10.06302 -9.97228 -9.71077 -9.66534 -8.94907 -8.34532 -6.64270 -4.24034 2.68280 3.32308 3.39762 3.40656 3.56042 3.87473 4.36810 4.73424 4.78593 4.96931 5.11541 5.23320 5.47845 5.63278 5.65361 5.71953 5.92134 6.01764 6.22412 6.25812 6.46462 6.50313 6.72414 7.16477 7.39385 7.83114 8.25027 8.51968 8.85481 9.43708 10.78831 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.063705 B = 0.008509 C = 0.008233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 439.423224 B = 3289.661143 C = 3400.008347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.194 3.806 3 H 0.037 0.963 4 C -0.608 4.608 5 H 0.068 0.932 6 C 0.039 3.961 7 N -0.894 5.894 8 Si 1.039 2.961 9 H -0.279 1.279 10 H -0.271 1.271 11 H -0.279 1.279 12 O -0.340 6.340 13 C 0.480 3.520 14 O -0.525 6.525 15 C -0.164 4.164 16 H 0.130 0.870 17 C -0.147 4.147 18 C -0.127 4.127 19 H 0.117 0.883 20 C -0.122 4.122 21 H 0.072 0.928 22 H 0.054 0.946 23 H 0.030 0.970 24 H 0.271 0.729 25 H 0.106 0.894 26 H 0.101 0.899 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.241 1.419 14.805 14.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.140 3.860 3 H 0.055 0.945 4 C -0.645 4.645 5 H 0.086 0.914 6 C -0.167 4.167 7 N -0.527 5.527 8 Si 0.866 3.134 9 H -0.204 1.204 10 H -0.197 1.197 11 H -0.205 1.205 12 O -0.256 6.256 13 C 0.324 3.676 14 O -0.416 6.416 15 C -0.183 4.183 16 H 0.148 0.852 17 C -0.184 4.184 18 C -0.145 4.145 19 H 0.135 0.865 20 C -0.179 4.179 21 H 0.091 0.909 22 H 0.073 0.927 23 H 0.049 0.951 24 H 0.082 0.918 25 H 0.125 0.875 26 H 0.119 0.881 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.706 2.888 13.605 13.926 hybrid contribution 0.411 -1.215 0.956 1.600 sum 1.117 1.672 14.560 14.699 Atomic orbital electron populations 1.22566 0.98000 1.01061 1.00981 1.20894 0.91008 0.93987 0.80074 0.94514 1.21926 1.41918 1.10981 0.89686 0.91362 1.25683 0.94499 1.05223 0.91327 1.70865 1.40769 1.10053 1.30989 0.84129 0.77628 0.75018 0.76617 1.20398 1.19747 1.20463 1.86541 1.75467 1.42935 1.20636 1.22445 0.74399 0.85426 0.85365 1.90571 1.49327 1.16957 1.84750 1.21843 1.02638 1.01617 0.92184 0.85204 1.23142 0.89488 1.03279 1.02496 1.22464 1.01224 0.99573 0.91274 0.86458 1.21390 1.01895 1.00615 0.93980 0.90941 0.92666 0.95061 0.91838 0.87547 0.88101 0.92280 0.91719 0.91898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.01 9.22 37.16 0.34 -3.66 15 2 C 0.19 5.11 2.14 -27.88 -0.06 5.05 15 3 H 0.04 1.00 5.81 -51.93 -0.30 0.70 15 4 C -0.61 -17.82 9.16 -34.44 -0.32 -18.14 15 5 H 0.07 2.14 8.06 -52.49 -0.42 1.72 15 6 C 0.04 1.13 5.29 -17.82 -0.09 1.04 15 7 N -0.89 -27.28 13.70 55.43 0.76 -26.52 15 8 Si 1.04 25.43 26.29 -169.99 -4.47 20.96 15 9 H -0.28 -6.69 7.11 56.52 0.40 -6.29 15 10 H -0.27 -6.16 5.76 56.52 0.33 -5.84 15 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 15 12 O -0.34 -8.28 9.86 -39.26 -0.39 -8.67 15 13 C 0.48 10.12 7.71 36.00 0.28 10.40 15 14 O -0.53 -12.15 15.48 -18.76 -0.29 -12.44 15 15 C -0.16 -2.51 6.02 -91.77 -0.55 -3.07 15 16 H 0.13 1.75 8.14 -51.93 -0.42 1.33 15 17 C -0.15 -1.86 9.88 -26.71 -0.26 -2.12 15 18 C -0.13 -1.60 5.92 -90.60 -0.54 -2.14 15 19 H 0.12 1.63 7.67 -51.93 -0.40 1.23 15 20 C -0.12 -1.13 10.19 37.16 0.38 -0.75 15 21 H 0.07 1.72 4.88 -51.93 -0.25 1.47 15 22 H 0.05 1.26 8.14 -51.93 -0.42 0.84 15 23 H 0.03 0.68 8.14 -51.93 -0.42 0.25 15 24 H 0.27 8.22 8.73 -40.82 -0.36 7.86 15 25 H 0.11 1.06 8.05 -51.93 -0.42 0.64 15 26 H 0.10 1.36 8.14 -51.93 -0.42 0.93 15 27 H 0.06 0.48 7.90 -51.93 -0.41 0.07 15 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 15 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 15 LS Contribution 250.79 15.07 3.78 3.78 Total: -1.00 -31.96 250.79 -5.40 -37.36 By element: Atomic # 1 Polarization: 2.90 SS G_CDS: -3.97 Total: -1.07 kcal Atomic # 6 Polarization: -12.57 SS G_CDS: -0.82 Total: -13.40 kcal Atomic # 7 Polarization: -27.28 SS G_CDS: 0.76 Total: -26.52 kcal Atomic # 8 Polarization: -20.43 SS G_CDS: -0.68 Total: -21.11 kcal Atomic # 14 Polarization: 25.43 SS G_CDS: -4.47 Total: 20.96 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -31.96 -5.40 -37.36 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379321727.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.144 kcal (2) G-P(sol) polarization free energy of solvation -31.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds