Wall clock time and date at job start Mon Mar 30 2020 02:43:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47343 * 2 1 4 4 C 1.50703 * 109.47576 * 239.99488 * 2 1 3 5 5 H 1.07994 * 120.00108 * 245.46291 * 4 2 1 6 6 C 1.37873 * 119.99522 * 65.46076 * 4 2 1 7 7 N 1.31520 * 120.00501 * 9.55458 * 6 4 2 8 8 Si 1.86805 * 119.99806 * 189.55412 * 6 4 2 9 9 H 1.48491 * 109.47447 * 84.99370 * 8 6 4 10 10 H 1.48504 * 109.46894 * 204.99494 * 8 6 4 11 11 H 1.48499 * 109.46903 * 324.99307 * 8 6 4 12 12 O 1.45200 * 109.47056 * 119.99621 * 2 1 3 13 13 C 1.34231 * 117.00142 * 270.00562 * 12 2 1 14 14 O 1.20819 * 120.00026 * 359.97438 * 13 12 2 15 15 C 1.50705 * 120.00017 * 180.02562 * 13 12 2 16 16 H 1.08997 * 115.56181 * 34.28618 * 15 13 12 17 17 C 1.53001 * 117.49188 * 248.60352 * 15 13 12 18 18 C 1.53002 * 60.00137 * 252.51219 * 17 15 13 19 19 H 1.08998 * 117.49609 * 252.51784 * 18 17 15 20 20 C 1.52998 * 117.50012 * 107.49098 * 18 17 15 21 21 H 1.08994 * 109.47365 * 303.66636 * 1 2 3 22 22 H 1.09002 * 109.46748 * 63.67117 * 1 2 3 23 23 H 1.09001 * 109.46808 * 183.66873 * 1 2 3 24 24 H 0.97003 * 120.00174 * 180.02562 * 7 6 4 25 25 H 1.09003 * 117.50031 * 0.02562 * 17 15 13 26 26 H 1.09005 * 117.49895 * 145.02002 * 17 15 13 27 27 H 1.09000 * 109.46928 * 111.39364 * 20 18 17 28 28 H 1.08997 * 109.47162 * 231.39342 * 20 18 17 29 29 H 1.08995 * 109.47069 * 351.39491 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0325 -0.7105 -1.2304 5 1 2.5787 -1.6371 -1.1337 6 6 1.7947 -0.1775 -2.4795 7 7 1.2993 1.0355 -2.5936 8 14 2.1763 -1.1782 -4.0100 9 1 1.0246 -2.0613 -4.3240 10 1 2.4231 -0.2615 -5.1520 11 1 3.3849 -2.0073 -3.7707 12 8 2.0140 -0.6844 1.1856 13 6 2.2170 0.0641 2.2812 14 8 1.9980 1.2519 2.2504 15 6 2.7192 -0.5769 3.5493 16 1 3.4125 -1.4070 3.4141 17 6 1.7545 -0.6480 4.7347 18 6 2.9308 0.3300 4.7633 19 1 3.7635 0.0963 5.4268 20 6 2.6166 1.8180 4.5970 21 1 -0.3634 0.5697 0.8552 22 1 -0.3633 0.4558 -0.9211 23 1 -0.3633 -1.0256 0.0658 24 1 1.1317 1.4103 -3.4724 25 1 0.7566 -0.2316 4.5972 26 1 1.8132 -1.5250 5.3795 27 1 2.8124 2.3378 5.5348 28 1 3.2457 2.2366 3.8114 29 1 1.5679 1.9398 4.3261 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379321728.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:55 Heat of formation + Delta-G solvation = -74.226766 kcal Electronic energy + Delta-G solvation = -12708.710247 eV Core-core repulsion = 10404.590380 eV Total energy + Delta-G solvation = -2304.119866 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.82167 -37.19060 -35.18098 -33.18143 -29.78837 -28.40132 -25.29373 -24.53856 -21.49024 -20.57091 -19.13196 -17.03688 -16.55179 -15.46468 -15.00519 -14.59771 -14.37184 -13.17608 -12.89905 -12.42804 -12.26213 -12.02229 -11.81043 -11.38051 -11.29556 -11.01328 -10.80327 -10.43389 -10.28118 -10.10590 -9.94928 -9.51951 -9.28579 -8.90794 -8.46527 -6.18842 -4.22520 2.87479 3.26363 3.31363 3.34465 3.63491 3.99055 4.35481 4.76357 4.97799 5.14242 5.15829 5.44009 5.65453 5.84617 5.95324 6.08688 6.13314 6.25964 6.59821 6.68438 6.83727 6.87937 7.16749 7.57076 7.70151 7.90076 8.15677 8.69525 8.94679 9.41823 10.90538 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.068840 B = 0.008241 C = 0.007996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 406.639836 B = 3396.652377 C = 3501.044578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.213 3.787 3 H 0.053 0.947 4 C -0.524 4.524 5 H 0.068 0.932 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.908 3.092 9 H -0.277 1.277 10 H -0.285 1.285 11 H -0.272 1.272 12 O -0.354 6.354 13 C 0.480 3.520 14 O -0.516 6.516 15 C -0.165 4.165 16 H 0.129 0.871 17 C -0.152 4.152 18 C -0.123 4.123 19 H 0.111 0.889 20 C -0.114 4.114 21 H 0.020 0.980 22 H 0.081 0.919 23 H 0.039 0.961 24 H 0.266 0.734 25 H 0.099 0.901 26 H 0.104 0.896 27 H 0.047 0.953 28 H 0.069 0.931 29 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.410 -2.604 11.118 11.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.160 3.840 3 H 0.071 0.929 4 C -0.562 4.562 5 H 0.087 0.913 6 C -0.138 4.138 7 N -0.524 5.524 8 Si 0.735 3.265 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.197 1.197 12 O -0.270 6.270 13 C 0.323 3.677 14 O -0.407 6.407 15 C -0.184 4.184 16 H 0.147 0.853 17 C -0.189 4.189 18 C -0.141 4.141 19 H 0.129 0.871 20 C -0.171 4.171 21 H 0.039 0.961 22 H 0.100 0.900 23 H 0.058 0.942 24 H 0.076 0.924 25 H 0.118 0.882 26 H 0.122 0.878 27 H 0.066 0.934 28 H 0.088 0.912 29 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.267 -2.113 10.898 11.173 hybrid contribution 0.114 -0.466 -0.997 1.107 sum 1.381 -2.579 9.901 10.324 Atomic orbital electron populations 1.22071 0.97992 0.99515 1.00993 1.20627 0.90929 0.94503 0.77922 0.92900 1.20987 1.37147 1.08979 0.89054 0.91331 1.24901 0.95065 0.94787 0.99062 1.69993 1.44131 1.13815 1.24484 0.86345 0.78933 0.79748 0.81460 1.20244 1.21066 1.19651 1.86470 1.75643 1.43651 1.21276 1.22302 0.74640 0.85448 0.85293 1.90590 1.48911 1.16647 1.84531 1.21851 1.05397 1.04005 0.87166 0.85343 1.23094 0.95539 1.01913 0.98361 1.22434 0.99957 0.94058 0.97682 0.87063 1.21398 1.03260 0.91953 1.00460 0.96107 0.89983 0.94231 0.92404 0.88234 0.87790 0.93428 0.91178 0.91676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.76 9.43 37.16 0.35 -3.41 15 2 C 0.21 5.84 2.42 -27.88 -0.07 5.77 15 3 H 0.05 1.61 7.10 -51.93 -0.37 1.24 15 4 C -0.52 -15.01 8.82 -34.44 -0.30 -15.31 15 5 H 0.07 1.94 7.83 -52.49 -0.41 1.53 15 6 C 0.06 1.81 5.17 -17.82 -0.09 1.72 15 7 N -0.89 -25.76 12.16 55.43 0.67 -25.09 15 8 Si 0.91 21.31 29.55 -169.99 -5.02 16.28 15 9 H -0.28 -6.36 7.11 56.52 0.40 -5.96 15 10 H -0.28 -6.59 7.11 56.52 0.40 -6.18 15 11 H -0.27 -6.27 7.11 56.52 0.40 -5.87 15 12 O -0.35 -8.74 9.86 -39.26 -0.39 -9.13 15 13 C 0.48 10.34 7.69 36.01 0.28 10.62 15 14 O -0.52 -12.15 12.33 -18.74 -0.23 -12.38 15 15 C -0.17 -2.60 6.30 -91.77 -0.58 -3.18 15 16 H 0.13 1.79 8.14 -51.93 -0.42 1.37 15 17 C -0.15 -1.93 9.88 -26.73 -0.26 -2.20 15 18 C -0.12 -1.62 6.41 -90.62 -0.58 -2.20 15 19 H 0.11 1.16 8.14 -51.93 -0.42 0.74 15 20 C -0.11 -1.65 8.43 37.16 0.31 -1.34 15 21 H 0.02 0.48 8.14 -51.93 -0.42 0.06 15 22 H 0.08 2.20 6.83 -51.93 -0.35 1.84 15 23 H 0.04 0.94 8.14 -51.93 -0.42 0.51 15 24 H 0.27 7.26 8.31 -40.82 -0.34 6.92 15 25 H 0.10 1.34 8.05 -51.93 -0.42 0.92 15 26 H 0.10 1.02 8.14 -51.93 -0.42 0.60 15 27 H 0.05 0.56 8.14 -51.93 -0.42 0.13 15 28 H 0.07 1.16 7.26 -51.93 -0.38 0.78 15 29 H 0.06 1.05 7.02 -51.93 -0.36 0.68 15 LS Contribution 251.03 15.07 3.78 3.78 Total: -1.00 -30.64 251.03 -6.10 -36.74 By element: Atomic # 1 Polarization: 3.28 SS G_CDS: -3.97 Total: -0.68 kcal Atomic # 6 Polarization: -8.58 SS G_CDS: -0.95 Total: -9.53 kcal Atomic # 7 Polarization: -25.76 SS G_CDS: 0.67 Total: -25.09 kcal Atomic # 8 Polarization: -20.89 SS G_CDS: -0.62 Total: -21.51 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -30.64 -6.10 -36.74 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379321728.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.488 kcal (2) G-P(sol) polarization free energy of solvation -30.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds