Wall clock time and date at job start Mon Mar 30 2020 02:43:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47343 * 2 1 4 4 C 1.50703 * 109.47576 * 239.99488 * 2 1 3 5 5 H 1.07994 * 120.00108 * 245.46291 * 4 2 1 6 6 C 1.37873 * 119.99522 * 65.46076 * 4 2 1 7 7 N 1.31520 * 120.00501 * 9.55458 * 6 4 2 8 8 Si 1.86805 * 119.99806 * 189.55412 * 6 4 2 9 9 H 1.48491 * 109.47447 * 84.99370 * 8 6 4 10 10 H 1.48504 * 109.46894 * 204.99494 * 8 6 4 11 11 H 1.48499 * 109.46903 * 324.99307 * 8 6 4 12 12 O 1.45200 * 109.47056 * 119.99621 * 2 1 3 13 13 C 1.34231 * 117.00142 * 270.00562 * 12 2 1 14 14 O 1.20819 * 120.00026 * 359.97438 * 13 12 2 15 15 C 1.50705 * 120.00017 * 180.02562 * 13 12 2 16 16 H 1.08997 * 115.56181 * 34.28618 * 15 13 12 17 17 C 1.53001 * 117.49188 * 248.60352 * 15 13 12 18 18 C 1.53002 * 60.00137 * 252.51219 * 17 15 13 19 19 H 1.08998 * 117.49609 * 252.51784 * 18 17 15 20 20 C 1.52998 * 117.50012 * 107.49098 * 18 17 15 21 21 H 1.08994 * 109.47365 * 303.66636 * 1 2 3 22 22 H 1.09002 * 109.46748 * 63.67117 * 1 2 3 23 23 H 1.09001 * 109.46808 * 183.66873 * 1 2 3 24 24 H 0.97003 * 120.00174 * 180.02562 * 7 6 4 25 25 H 1.09003 * 117.50031 * 0.02562 * 17 15 13 26 26 H 1.09005 * 117.49895 * 145.02002 * 17 15 13 27 27 H 1.09000 * 109.46928 * 111.39364 * 20 18 17 28 28 H 1.08997 * 109.47162 * 231.39342 * 20 18 17 29 29 H 1.08995 * 109.47069 * 351.39491 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0325 -0.7105 -1.2304 5 1 2.5787 -1.6371 -1.1337 6 6 1.7947 -0.1775 -2.4795 7 7 1.2993 1.0355 -2.5936 8 14 2.1763 -1.1782 -4.0100 9 1 1.0246 -2.0613 -4.3240 10 1 2.4231 -0.2615 -5.1520 11 1 3.3849 -2.0073 -3.7707 12 8 2.0140 -0.6844 1.1856 13 6 2.2170 0.0641 2.2812 14 8 1.9980 1.2519 2.2504 15 6 2.7192 -0.5769 3.5493 16 1 3.4125 -1.4070 3.4141 17 6 1.7545 -0.6480 4.7347 18 6 2.9308 0.3300 4.7633 19 1 3.7635 0.0963 5.4268 20 6 2.6166 1.8180 4.5970 21 1 -0.3634 0.5697 0.8552 22 1 -0.3633 0.4558 -0.9211 23 1 -0.3633 -1.0256 0.0658 24 1 1.1317 1.4103 -3.4724 25 1 0.7566 -0.2316 4.5972 26 1 1.8132 -1.5250 5.3795 27 1 2.8124 2.3378 5.5348 28 1 3.2457 2.2366 3.8114 29 1 1.5679 1.9398 4.3261 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379321728.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:55 Heat of formation + Delta-G solvation = -92.408125 kcal Electronic energy + Delta-G solvation = -12709.498650 eV Core-core repulsion = 10404.590380 eV Total energy + Delta-G solvation = -2304.908269 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.49342 -38.67448 -36.90113 -35.29525 -31.87626 -29.61562 -27.45104 -26.05384 -23.15580 -21.94716 -20.79595 -18.70806 -18.60249 -17.19217 -16.76585 -16.25306 -15.97292 -14.90778 -14.29683 -14.21573 -13.88685 -13.57591 -13.35771 -13.23383 -12.89203 -12.78211 -12.50615 -12.39683 -12.15736 -11.58585 -11.25768 -11.16807 -11.07875 -10.79919 -10.61821 -8.33194 -6.47333 1.26768 1.40420 1.43461 1.53740 2.01218 2.40454 2.79709 2.98621 3.62096 3.83368 3.95046 4.19949 4.44755 4.49931 4.72124 4.73747 4.79791 4.87105 4.94458 5.00349 5.11671 5.16746 5.43198 5.50523 5.56488 5.85451 6.10725 6.58918 7.01335 7.24878 8.76926 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.068840 B = 0.008241 C = 0.007996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 406.639836 B = 3396.652377 C = 3501.044578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.214 3.786 3 H 0.009 0.991 4 C -0.552 4.552 5 H 0.067 0.933 6 C 0.018 3.982 7 N -0.919 5.919 8 Si 0.982 3.018 9 H -0.265 1.265 10 H -0.278 1.278 11 H -0.264 1.264 12 O -0.365 6.365 13 C 0.468 3.532 14 O -0.545 6.545 15 C -0.189 4.189 16 H 0.151 0.849 17 C -0.130 4.130 18 C -0.111 4.111 19 H 0.152 0.848 20 C -0.116 4.116 21 H 0.026 0.974 22 H 0.064 0.936 23 H 0.053 0.947 24 H 0.271 0.729 25 H 0.087 0.913 26 H 0.146 0.854 27 H 0.080 0.920 28 H 0.040 0.960 29 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.926 -4.243 12.201 13.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.161 3.839 3 H 0.027 0.973 4 C -0.589 4.589 5 H 0.085 0.915 6 C -0.182 4.182 7 N -0.556 5.556 8 Si 0.805 3.195 9 H -0.190 1.190 10 H -0.203 1.203 11 H -0.189 1.189 12 O -0.282 6.282 13 C 0.313 3.687 14 O -0.437 6.437 15 C -0.208 4.208 16 H 0.169 0.831 17 C -0.166 4.166 18 C -0.128 4.128 19 H 0.170 0.830 20 C -0.173 4.173 21 H 0.045 0.955 22 H 0.082 0.918 23 H 0.072 0.928 24 H 0.080 0.920 25 H 0.105 0.895 26 H 0.164 0.836 27 H 0.098 0.902 28 H 0.060 0.940 29 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 1.781 -3.754 12.009 12.708 hybrid contribution -0.040 0.134 -1.247 1.255 sum 1.741 -3.620 10.763 11.488 Atomic orbital electron populations 1.21884 0.96784 1.00229 1.00288 1.20339 0.91877 0.92375 0.79315 0.97271 1.21269 1.38240 1.09269 0.90165 0.91500 1.25872 0.94359 0.95702 1.02288 1.70113 1.44551 1.15354 1.25606 0.85213 0.79232 0.78189 0.76891 1.18958 1.20326 1.18854 1.86462 1.76192 1.43932 1.21586 1.23568 0.73715 0.85396 0.85996 1.90579 1.50151 1.18028 1.84946 1.22005 1.07950 1.05849 0.84996 0.83146 1.23295 0.94450 1.02948 0.95935 1.22675 1.01574 0.92629 0.95957 0.82996 1.21366 1.01033 0.93801 1.01053 0.95456 0.91759 0.92803 0.91968 0.89475 0.83638 0.90159 0.94048 0.94171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.98 9.43 71.98 0.68 -6.30 15 2 C 0.21 12.19 2.42 29.85 0.07 12.26 15 3 H 0.01 0.61 7.10 -2.39 -0.02 0.59 15 4 C -0.55 -32.24 8.82 25.60 0.23 -32.01 15 5 H 0.07 3.82 7.83 -2.91 -0.02 3.80 15 6 C 0.02 1.00 5.17 84.65 0.44 1.44 15 7 N -0.92 -54.40 12.16 21.45 0.26 -54.14 15 8 Si 0.98 43.48 29.55 68.60 2.03 45.51 15 9 H -0.26 -11.18 7.11 99.48 0.71 -10.47 15 10 H -0.28 -11.92 7.11 99.48 0.71 -11.21 15 11 H -0.26 -11.30 7.11 99.48 0.71 -10.60 15 12 O -0.37 -18.44 9.86 -51.43 -0.51 -18.95 15 13 C 0.47 20.53 7.69 71.24 0.55 21.08 15 14 O -0.55 -26.78 12.33 21.98 0.27 -26.51 15 15 C -0.19 -5.63 6.30 -11.54 -0.07 -5.70 15 16 H 0.15 3.79 8.14 -2.39 -0.02 3.77 15 17 C -0.13 -2.87 9.88 30.60 0.30 -2.57 15 18 C -0.11 -2.58 6.41 -10.79 -0.07 -2.64 15 19 H 0.15 2.38 8.14 -2.39 -0.02 2.36 15 20 C -0.12 -3.24 8.43 71.98 0.61 -2.64 15 21 H 0.03 1.32 8.14 -2.39 -0.02 1.30 15 22 H 0.06 3.54 6.83 -2.39 -0.02 3.53 15 23 H 0.05 2.58 8.14 -2.39 -0.02 2.56 15 24 H 0.27 14.95 8.31 -92.71 -0.77 14.18 15 25 H 0.09 2.18 8.05 -2.39 -0.02 2.16 15 26 H 0.15 2.08 8.14 -2.38 -0.02 2.06 15 27 H 0.08 1.70 8.14 -2.39 -0.02 1.68 15 28 H 0.04 1.39 7.26 -2.39 -0.02 1.37 15 29 H 0.04 1.30 7.02 -2.39 -0.02 1.28 15 Total: -1.00 -68.72 251.03 5.91 -62.81 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: 1.12 Total: 8.36 kcal Atomic # 6 Polarization: -19.81 SS G_CDS: 2.73 Total: -17.08 kcal Atomic # 7 Polarization: -54.40 SS G_CDS: 0.26 Total: -54.14 kcal Atomic # 8 Polarization: -45.22 SS G_CDS: -0.24 Total: -45.46 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -68.72 5.91 -62.81 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379321728.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.594 kcal (2) G-P(sol) polarization free energy of solvation -68.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds