Wall clock time and date at job start Mon Mar 30 2020 02:29:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47037 * 2 1 4 4 C 1.53001 * 109.47121 * 179.97438 * 3 2 1 5 5 H 1.09002 * 115.55911 * 29.29701 * 4 3 2 6 6 C 1.53000 * 117.50223 * 243.61012 * 4 3 2 7 7 C 1.52997 * 117.49889 * 174.98273 * 4 3 2 8 8 H 1.08997 * 117.50044 * 214.98097 * 7 4 3 9 9 C 1.50698 * 117.51636 * 0.02562 * 7 4 3 10 10 O 1.21213 * 120.00301 * 0.02562 * 9 7 4 11 11 O 1.34320 * 119.99955 * 180.02562 * 9 7 4 12 12 C 1.34911 * 116.99723 * 179.97438 * 11 9 7 13 13 H 1.07998 * 120.00772 * 0.02562 * 12 11 9 14 14 C 1.38763 * 119.99860 * 179.97438 * 12 11 9 15 15 N 1.31444 * 119.99469 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00073 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47427 * 89.99664 * 16 14 12 18 18 H 1.48502 * 109.46960 * 210.00292 * 16 14 12 19 19 H 1.48503 * 109.46989 * 329.99353 * 16 14 12 20 20 H 1.08991 * 109.47365 * 300.00027 * 1 2 3 21 21 H 1.09004 * 109.46993 * 60.00360 * 1 2 3 22 22 H 1.09005 * 109.46972 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47700 * 239.99821 * 2 1 3 24 24 H 1.09004 * 109.46993 * 119.99640 * 2 1 3 25 25 H 1.08996 * 109.46714 * 60.00110 * 3 2 1 26 26 H 1.08994 * 109.46846 * 299.99837 * 3 2 1 27 27 H 1.08990 * 117.49990 * 145.01974 * 6 4 3 28 28 H 1.09004 * 117.49237 * 359.97438 * 6 4 3 29 29 H 0.97002 * 119.99521 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 1 4.0405 0.5849 -0.4802 6 6 4.2760 2.0460 1.2165 7 6 4.2764 2.7945 -0.1179 8 1 5.2117 2.8263 -0.6768 9 6 3.4124 4.0245 -0.2259 10 8 2.2049 3.9197 -0.2162 11 8 3.9804 5.2369 -0.3328 12 6 3.1501 6.2961 -0.4262 13 1 2.0806 6.1469 -0.4127 14 6 3.6703 7.5777 -0.5387 15 7 4.9720 7.7595 -0.5536 16 14 2.5206 9.0444 -0.6673 17 1 2.2159 9.5554 0.6932 18 1 3.1717 10.1152 -1.4641 19 1 1.2604 8.6285 -1.3337 20 1 -0.3633 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8934 -0.5138 -0.8899 24 1 1.8933 -0.5138 0.8901 25 1 1.6766 1.9563 0.8900 26 1 1.6766 1.9563 -0.8900 27 1 5.2108 1.5854 1.5355 28 1 3.6503 2.4433 2.0158 29 1 5.3356 8.6553 -0.6326 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381905297.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:27 Heat of formation + Delta-G solvation = -73.268425 kcal Electronic energy + Delta-G solvation = -12471.353291 eV Core-core repulsion = 10167.274982 eV Total energy + Delta-G solvation = -2304.078310 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.34990 -37.15293 -34.69161 -33.58909 -32.08053 -27.25849 -25.72656 -23.42167 -21.67770 -20.48284 -19.11442 -17.69882 -16.53536 -15.17508 -14.68756 -14.48140 -14.31706 -13.95979 -13.29658 -12.77707 -12.22921 -12.01908 -11.75437 -11.46124 -11.25168 -10.96108 -10.75844 -10.61838 -10.44348 -10.37565 -9.82785 -9.63544 -9.52023 -8.70362 -8.53155 -6.36760 -4.04116 3.11366 3.20843 3.26888 3.41782 3.94918 4.27541 4.58550 4.90836 5.13568 5.28615 5.36139 5.39277 5.48500 5.61511 5.79094 5.98788 6.04469 6.07361 6.20235 6.24937 6.35844 6.45394 6.67309 6.86527 7.00831 7.44380 8.00695 8.78886 9.12177 9.94786 10.81646 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.052574 B = 0.008150 C = 0.007230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.453141 B = 3434.622582 C = 3871.617448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C -0.080 4.080 4 C -0.122 4.122 5 H 0.107 0.893 6 C -0.156 4.156 7 C -0.147 4.147 8 H 0.121 0.879 9 C 0.426 3.574 10 O -0.550 6.550 11 O -0.213 6.213 12 C -0.381 4.381 13 H 0.095 0.905 14 C 0.041 3.959 15 N -0.866 5.866 16 Si 0.943 3.057 17 H -0.274 1.274 18 H -0.278 1.278 19 H -0.267 1.267 20 H 0.053 0.947 21 H 0.054 0.946 22 H 0.047 0.953 23 H 0.055 0.945 24 H 0.055 0.945 25 H 0.069 0.931 26 H 0.080 0.920 27 H 0.099 0.901 28 H 0.097 0.903 29 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.706 -10.867 1.401 11.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C -0.117 4.117 4 C -0.140 4.140 5 H 0.125 0.875 6 C -0.193 4.193 7 C -0.166 4.166 8 H 0.139 0.861 9 C 0.273 3.727 10 O -0.448 6.448 11 O -0.120 6.120 12 C -0.457 4.457 13 H 0.113 0.887 14 C -0.163 4.163 15 N -0.504 5.504 16 Si 0.768 3.232 17 H -0.199 1.199 18 H -0.204 1.204 19 H -0.191 1.191 20 H 0.072 0.928 21 H 0.073 0.927 22 H 0.066 0.934 23 H 0.074 0.926 24 H 0.074 0.926 25 H 0.087 0.913 26 H 0.098 0.902 27 H 0.117 0.883 28 H 0.115 0.885 29 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.855 -10.685 1.382 11.146 hybrid contribution -0.313 0.820 -0.084 0.882 sum -3.167 -9.865 1.298 10.442 Atomic orbital electron populations 1.21744 0.96247 1.00711 1.02080 1.21605 0.95630 0.97833 1.01128 1.21250 0.91370 0.94721 1.04336 1.22431 0.96088 0.94305 1.01212 0.87507 1.23052 1.02570 1.02539 0.91158 1.21621 1.01355 0.90248 1.03412 0.86072 1.22175 0.87016 0.85159 0.78366 1.90535 1.15905 1.86979 1.51358 1.83870 1.39914 1.13221 1.75001 1.21221 0.90377 0.82445 1.51670 0.88745 1.25336 0.96650 0.97976 0.96346 1.70004 1.10864 1.22872 1.46624 0.85684 0.79389 0.79570 0.78601 1.19940 1.20363 1.19127 0.92807 0.92716 0.93405 0.92598 0.92588 0.91281 0.90153 0.88297 0.88474 0.92157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.91 37.16 0.37 -1.46 15 2 C -0.12 -1.60 5.89 -26.73 -0.16 -1.76 15 3 C -0.08 -1.32 3.76 -26.73 -0.10 -1.42 15 4 C -0.12 -1.92 5.74 -90.62 -0.52 -2.44 15 5 H 0.11 1.39 8.07 -51.93 -0.42 0.97 15 6 C -0.16 -2.47 9.88 -26.73 -0.26 -2.74 15 7 C -0.15 -2.84 6.30 -91.77 -0.58 -3.41 15 8 H 0.12 2.15 8.14 -51.93 -0.42 1.73 15 9 C 0.43 10.82 7.67 36.00 0.28 11.09 15 10 O -0.55 -14.61 12.35 -19.05 -0.24 -14.84 15 11 O -0.21 -6.31 9.75 -20.70 -0.20 -6.51 15 12 C -0.38 -11.53 9.65 30.93 0.30 -11.23 15 13 H 0.09 2.86 6.86 -52.49 -0.36 2.50 15 14 C 0.04 1.17 5.49 -17.52 -0.10 1.07 15 15 N -0.87 -25.96 13.67 55.48 0.76 -25.20 15 16 Si 0.94 21.69 29.55 -169.99 -5.02 16.67 15 17 H -0.27 -6.11 7.11 56.52 0.40 -5.71 15 18 H -0.28 -6.15 7.11 56.52 0.40 -5.75 15 19 H -0.27 -6.03 7.11 56.52 0.40 -5.63 15 20 H 0.05 0.66 8.14 -51.93 -0.42 0.24 15 21 H 0.05 0.69 8.14 -51.93 -0.42 0.26 15 22 H 0.05 0.49 8.14 -51.93 -0.42 0.07 15 23 H 0.06 0.66 8.14 -51.93 -0.42 0.24 15 24 H 0.06 0.66 8.14 -51.93 -0.42 0.24 15 25 H 0.07 1.27 7.30 -51.93 -0.38 0.89 15 26 H 0.08 1.54 6.92 -51.93 -0.36 1.18 15 27 H 0.10 1.27 8.14 -51.93 -0.42 0.85 15 28 H 0.10 1.62 8.03 -51.93 -0.42 1.21 15 29 H 0.27 7.36 8.31 -40.82 -0.34 7.02 15 LS Contribution 253.40 15.07 3.82 3.82 Total: -1.00 -32.38 253.40 -5.69 -38.06 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: -4.03 Total: 0.30 kcal Atomic # 6 Polarization: -11.52 SS G_CDS: -0.77 Total: -12.29 kcal Atomic # 7 Polarization: -25.96 SS G_CDS: 0.76 Total: -25.20 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: -0.44 Total: -21.36 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -32.38 -5.69 -38.06 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381905297.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.206 kcal (2) G-P(sol) polarization free energy of solvation -32.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds