Wall clock time and date at job start Mon Mar 30 2020 02:29:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47037 * 2 1 4 4 C 1.53001 * 109.47121 * 179.97438 * 3 2 1 5 5 H 1.09002 * 115.55911 * 29.29701 * 4 3 2 6 6 C 1.53000 * 117.50223 * 243.61012 * 4 3 2 7 7 C 1.52997 * 117.49889 * 174.98273 * 4 3 2 8 8 H 1.08997 * 117.50044 * 214.98097 * 7 4 3 9 9 C 1.50698 * 117.51636 * 0.02562 * 7 4 3 10 10 O 1.21213 * 120.00301 * 0.02562 * 9 7 4 11 11 O 1.34320 * 119.99955 * 180.02562 * 9 7 4 12 12 C 1.34911 * 116.99723 * 179.97438 * 11 9 7 13 13 H 1.07998 * 120.00772 * 0.02562 * 12 11 9 14 14 C 1.38763 * 119.99860 * 179.97438 * 12 11 9 15 15 N 1.31444 * 119.99469 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00073 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47427 * 89.99664 * 16 14 12 18 18 H 1.48502 * 109.46960 * 210.00292 * 16 14 12 19 19 H 1.48503 * 109.46989 * 329.99353 * 16 14 12 20 20 H 1.08991 * 109.47365 * 300.00027 * 1 2 3 21 21 H 1.09004 * 109.46993 * 60.00360 * 1 2 3 22 22 H 1.09005 * 109.46972 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47700 * 239.99821 * 2 1 3 24 24 H 1.09004 * 109.46993 * 119.99640 * 2 1 3 25 25 H 1.08996 * 109.46714 * 60.00110 * 3 2 1 26 26 H 1.08994 * 109.46846 * 299.99837 * 3 2 1 27 27 H 1.08990 * 117.49990 * 145.01974 * 6 4 3 28 28 H 1.09004 * 117.49237 * 359.97438 * 6 4 3 29 29 H 0.97002 * 119.99521 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 1 4.0405 0.5849 -0.4802 6 6 4.2760 2.0460 1.2165 7 6 4.2764 2.7945 -0.1179 8 1 5.2117 2.8263 -0.6768 9 6 3.4124 4.0245 -0.2259 10 8 2.2049 3.9197 -0.2162 11 8 3.9804 5.2369 -0.3328 12 6 3.1501 6.2961 -0.4262 13 1 2.0806 6.1469 -0.4127 14 6 3.6703 7.5777 -0.5387 15 7 4.9720 7.7595 -0.5536 16 14 2.5206 9.0444 -0.6673 17 1 2.2159 9.5554 0.6932 18 1 3.1717 10.1152 -1.4641 19 1 1.2604 8.6285 -1.3337 20 1 -0.3633 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8934 -0.5138 -0.8899 24 1 1.8933 -0.5138 0.8901 25 1 1.6766 1.9563 0.8900 26 1 1.6766 1.9563 -0.8900 27 1 5.2108 1.5854 1.5355 28 1 3.6503 2.4433 2.0158 29 1 5.3356 8.6553 -0.6326 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381905297.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:27 Heat of formation + Delta-G solvation = -93.042852 kcal Electronic energy + Delta-G solvation = -12472.210775 eV Core-core repulsion = 10167.274982 eV Total energy + Delta-G solvation = -2304.935793 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.25713 -38.82423 -36.68815 -34.77475 -34.28355 -28.62941 -27.69595 -25.22316 -22.83317 -21.81828 -20.89116 -19.89438 -18.43386 -16.84119 -16.43860 -16.23443 -16.00410 -15.50747 -14.87171 -14.07646 -13.81681 -13.61040 -13.27366 -13.17034 -12.95254 -12.42482 -12.22516 -12.07357 -12.02342 -11.93583 -11.68140 -11.05941 -10.98036 -10.70975 -10.59116 -8.55181 -6.35115 1.27475 1.31895 1.49621 1.58690 2.10062 2.67749 2.84397 3.02709 3.60718 3.93190 4.08193 4.24287 4.35109 4.41788 4.61468 4.67057 4.85179 4.92447 5.01248 5.04535 5.07963 5.17347 5.20196 5.39690 5.44949 5.65630 5.83344 6.69070 6.89848 7.80681 8.66168 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.052574 B = 0.008150 C = 0.007230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.453141 B = 3434.622582 C = 3871.617448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.116 4.116 3 C -0.080 4.080 4 C -0.101 4.101 5 H 0.150 0.850 6 C -0.135 4.135 7 C -0.182 4.182 8 H 0.137 0.863 9 C 0.420 3.580 10 O -0.570 6.570 11 O -0.248 6.248 12 C -0.422 4.422 13 H 0.080 0.920 14 C -0.006 4.006 15 N -0.905 5.905 16 Si 1.019 2.981 17 H -0.260 1.260 18 H -0.259 1.259 19 H -0.264 1.264 20 H 0.044 0.956 21 H 0.042 0.958 22 H 0.072 0.928 23 H 0.073 0.927 24 H 0.075 0.925 25 H 0.040 0.960 26 H 0.045 0.955 27 H 0.141 0.859 28 H 0.082 0.918 29 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.556 -12.119 1.650 12.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.153 4.153 3 C -0.118 4.118 4 C -0.119 4.119 5 H 0.167 0.833 6 C -0.172 4.172 7 C -0.201 4.201 8 H 0.155 0.845 9 C 0.268 3.732 10 O -0.468 6.468 11 O -0.157 6.157 12 C -0.498 4.498 13 H 0.098 0.902 14 C -0.206 4.206 15 N -0.543 5.543 16 Si 0.837 3.163 17 H -0.184 1.184 18 H -0.183 1.183 19 H -0.188 1.188 20 H 0.063 0.937 21 H 0.061 0.939 22 H 0.091 0.909 23 H 0.092 0.908 24 H 0.093 0.907 25 H 0.059 0.941 26 H 0.064 0.936 27 H 0.159 0.841 28 H 0.101 0.899 29 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.700 -11.965 1.637 12.375 hybrid contribution -0.381 1.100 -0.142 1.173 sum -3.081 -10.865 1.495 11.392 Atomic orbital electron populations 1.21769 0.96059 1.02049 1.01133 1.21549 0.95833 0.95026 1.02896 1.21174 0.92370 0.96926 1.01291 1.22691 0.95361 0.93080 1.00735 0.83250 1.23234 1.04072 1.00362 0.89486 1.21769 1.01930 0.88932 1.07458 0.84521 1.23489 0.87792 0.85735 0.76158 1.90513 1.17272 1.87336 1.51683 1.83894 1.40709 1.14570 1.76513 1.21421 0.90122 0.83853 1.54363 0.90214 1.26576 0.98694 1.00582 0.94767 1.70088 1.12832 1.24371 1.46975 0.84613 0.76935 0.75233 0.79471 1.18415 1.18257 1.18826 0.93681 0.93875 0.90861 0.90787 0.90652 0.94094 0.93609 0.84062 0.89947 0.91207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.49 9.91 71.98 0.71 -2.77 15 2 C -0.12 -2.68 5.89 30.59 0.18 -2.50 15 3 C -0.08 -2.61 3.76 30.60 0.11 -2.49 15 4 C -0.10 -2.93 5.74 -10.79 -0.06 -2.99 15 5 H 0.15 3.15 8.07 -2.39 -0.02 3.13 15 6 C -0.13 -3.95 9.88 30.60 0.30 -3.65 15 7 C -0.18 -6.90 6.30 -11.54 -0.07 -6.97 15 8 H 0.14 4.71 8.14 -2.39 -0.02 4.69 15 9 C 0.42 22.13 7.67 71.24 0.55 22.67 15 10 O -0.57 -31.75 12.35 20.77 0.26 -31.50 15 11 O -0.25 -15.38 9.75 14.87 0.14 -15.23 15 12 C -0.42 -26.61 9.65 67.95 0.66 -25.96 15 13 H 0.08 5.09 6.86 -2.91 -0.02 5.07 15 14 C -0.01 -0.38 5.49 84.88 0.47 0.09 15 15 N -0.91 -55.13 13.67 21.63 0.30 -54.84 15 16 Si 1.02 44.69 29.55 68.60 2.03 46.72 15 17 H -0.26 -10.74 7.11 99.48 0.71 -10.03 15 18 H -0.26 -10.44 7.11 99.48 0.71 -9.73 15 19 H -0.26 -11.33 7.11 99.48 0.71 -10.63 15 20 H 0.04 1.08 8.14 -2.39 -0.02 1.06 15 21 H 0.04 1.06 8.14 -2.39 -0.02 1.04 15 22 H 0.07 1.30 8.14 -2.38 -0.02 1.28 15 23 H 0.07 1.48 8.14 -2.39 -0.02 1.47 15 24 H 0.07 1.50 8.14 -2.39 -0.02 1.48 15 25 H 0.04 1.53 7.30 -2.39 -0.02 1.51 15 26 H 0.05 1.80 6.92 -2.39 -0.02 1.78 15 27 H 0.14 2.99 8.14 -2.39 -0.02 2.97 15 28 H 0.08 2.68 8.03 -2.38 -0.02 2.66 15 29 H 0.28 15.32 8.31 -92.71 -0.77 14.55 15 Total: -1.00 -73.82 253.40 6.69 -67.13 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: 1.12 Total: 12.30 kcal Atomic # 6 Polarization: -27.42 SS G_CDS: 2.84 Total: -24.57 kcal Atomic # 7 Polarization: -55.13 SS G_CDS: 0.30 Total: -54.84 kcal Atomic # 8 Polarization: -47.13 SS G_CDS: 0.40 Total: -46.73 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -73.82 6.69 -67.13 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381905297.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.916 kcal (2) G-P(sol) polarization free energy of solvation -73.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds