Wall clock time and date at job start Mon Mar 30 2020 02:43:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.47196 * 2 1 4 4 C 1.50703 * 109.46980 * 119.99435 * 2 1 3 5 5 H 1.08005 * 119.99911 * 120.00464 * 4 2 1 6 6 C 1.37874 * 120.00198 * 299.99947 * 4 2 1 7 7 N 1.31514 * 120.00005 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00194 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.46845 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46889 * 120.00329 * 8 6 4 11 11 H 1.48497 * 109.47442 * 240.00410 * 8 6 4 12 12 O 1.45200 * 109.47768 * 239.99891 * 2 1 3 13 13 C 1.34225 * 117.00401 * 89.99702 * 12 2 1 14 14 O 1.20826 * 119.99751 * 0.02562 * 13 12 2 15 15 C 1.50697 * 120.00155 * 180.02562 * 13 12 2 16 16 H 1.09002 * 115.54932 * 34.41776 * 15 13 12 17 17 C 1.53000 * 117.50034 * 248.74712 * 15 13 12 18 18 C 1.53002 * 117.49992 * 180.08939 * 15 13 12 19 19 H 1.08999 * 117.49664 * 0.02562 * 18 15 13 20 20 C 1.52999 * 117.49968 * 215.00707 * 18 15 13 21 21 H 1.09005 * 109.47196 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47661 * 300.00524 * 1 2 3 23 23 H 1.08999 * 109.46959 * 60.00713 * 1 2 3 24 24 H 0.96998 * 120.00439 * 179.97438 * 7 6 4 25 25 H 1.09008 * 117.49673 * 359.97438 * 17 15 13 26 26 H 1.08999 * 117.49942 * 144.97208 * 17 15 13 27 27 H 1.08997 * 109.47537 * 59.99390 * 20 18 15 28 28 H 1.09001 * 109.46849 * 180.02562 * 20 18 15 29 29 H 1.09005 * 109.46784 * 299.99609 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1316 6 6 1.6992 -0.2392 2.4828 7 7 0.9427 0.8298 2.6034 8 14 2.3212 -1.1200 4.0081 9 1 3.1463 -2.2867 3.6040 10 1 3.1464 -0.1869 4.8166 11 1 1.1660 -1.5863 4.8162 12 8 2.0141 -0.6845 -1.1855 13 6 2.2172 0.0639 -2.2811 14 8 1.9982 1.2517 -2.2504 15 6 2.7185 -0.5774 -3.5493 16 1 2.3648 -1.5915 -3.7349 17 6 4.1376 -0.2299 -4.0036 18 6 2.9320 0.3295 -4.7630 19 1 2.7104 1.3901 -4.6439 20 6 2.6326 -0.2564 -6.1442 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5137 -0.8900 24 1 0.7080 1.1611 3.4843 25 1 4.7085 0.4629 -3.3853 26 1 4.7176 -1.0156 -4.4877 27 1 1.5866 -0.5593 -6.1915 28 1 2.8283 0.4959 -6.9082 29 1 3.2701 -1.1236 -6.3169 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382200114.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:58 Heat of formation + Delta-G solvation = -77.550168 kcal Electronic energy + Delta-G solvation = -12522.512499 eV Core-core repulsion = 10218.248519 eV Total energy + Delta-G solvation = -2304.263980 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.72850 -37.23308 -35.33169 -33.22824 -29.70454 -28.68525 -25.33386 -24.46297 -21.40268 -20.49528 -19.28416 -17.18561 -16.52553 -15.64632 -15.05492 -14.60225 -13.90465 -13.65177 -13.14163 -12.68547 -12.20282 -12.11516 -11.65081 -11.40474 -11.21736 -11.06034 -10.82796 -10.36378 -10.27768 -10.24276 -10.01104 -9.57108 -9.49552 -8.87757 -8.48468 -6.17380 -4.24141 2.84985 3.24287 3.30572 3.35589 3.59421 3.98323 4.33972 4.82971 4.87998 5.08674 5.15736 5.31023 5.60837 5.70520 5.73297 5.85108 6.00450 6.13091 6.34478 6.66367 6.90632 6.93607 7.20033 7.61774 7.74595 7.96036 8.16014 8.67775 8.92313 9.41392 10.90210 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.069082 B = 0.007772 C = 0.007376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 405.219675 B = 3601.695407 C = 3795.103088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.213 3.787 3 H 0.046 0.954 4 C -0.520 4.520 5 H 0.069 0.931 6 C 0.061 3.939 7 N -0.890 5.890 8 Si 0.912 3.088 9 H -0.270 1.270 10 H -0.282 1.282 11 H -0.281 1.281 12 O -0.353 6.353 13 C 0.481 3.519 14 O -0.524 6.524 15 C -0.162 4.162 16 H 0.129 0.871 17 C -0.148 4.148 18 C -0.129 4.129 19 H 0.117 0.883 20 C -0.121 4.121 21 H 0.037 0.963 22 H 0.099 0.901 23 H 0.016 0.984 24 H 0.265 0.735 25 H 0.100 0.900 26 H 0.105 0.895 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.362 -3.069 -11.486 12.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.161 3.839 3 H 0.064 0.936 4 C -0.558 4.558 5 H 0.088 0.912 6 C -0.141 4.141 7 N -0.528 5.528 8 Si 0.739 3.261 9 H -0.195 1.195 10 H -0.208 1.208 11 H -0.207 1.207 12 O -0.268 6.268 13 C 0.324 3.676 14 O -0.414 6.414 15 C -0.182 4.182 16 H 0.147 0.853 17 C -0.185 4.185 18 C -0.147 4.147 19 H 0.135 0.865 20 C -0.178 4.178 21 H 0.056 0.944 22 H 0.118 0.882 23 H 0.035 0.965 24 H 0.075 0.925 25 H 0.118 0.882 26 H 0.123 0.877 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.194 -2.613 -11.269 12.001 hybrid contribution 0.124 -0.312 0.998 1.053 sum 3.318 -2.925 -10.271 11.183 Atomic orbital electron populations 1.22158 0.97553 1.00120 1.01404 1.20654 0.91433 0.93930 0.77870 0.93617 1.21079 1.32366 1.13440 0.88890 0.91240 1.24899 0.94956 0.95116 0.99093 1.69911 1.36150 1.22643 1.24054 0.86211 0.78622 0.79493 0.81761 1.19461 1.20757 1.20703 1.86470 1.75577 1.43612 1.21190 1.22314 0.74578 0.85395 0.85333 1.90579 1.49125 1.16983 1.84739 1.21855 1.02383 1.01522 0.92395 0.85321 1.23131 0.89556 1.03250 1.02584 1.22459 1.01289 0.99629 0.91316 0.86489 1.21385 1.01856 1.00554 0.94034 0.94415 0.88225 0.96521 0.92463 0.88157 0.87670 0.91921 0.91795 0.92344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.05 9.33 37.15 0.35 -3.70 15 2 C 0.21 5.94 2.56 -27.88 -0.07 5.86 15 3 H 0.05 1.40 7.16 -51.93 -0.37 1.02 15 4 C -0.52 -14.95 8.90 -34.44 -0.31 -15.26 15 5 H 0.07 1.97 7.81 -52.48 -0.41 1.56 15 6 C 0.06 1.72 5.30 -17.82 -0.09 1.62 15 7 N -0.89 -25.68 11.32 55.43 0.63 -25.06 15 8 Si 0.91 21.34 29.54 -169.99 -5.02 16.32 15 9 H -0.27 -6.21 7.11 56.52 0.40 -5.81 15 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 15 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 15 12 O -0.35 -8.80 9.86 -39.25 -0.39 -9.19 15 13 C 0.48 10.57 7.71 36.00 0.28 10.85 15 14 O -0.52 -12.87 15.48 -18.75 -0.29 -13.16 15 15 C -0.16 -2.59 6.02 -91.77 -0.55 -3.14 15 16 H 0.13 1.80 8.14 -51.93 -0.42 1.38 15 17 C -0.15 -1.94 9.88 -26.70 -0.26 -2.20 15 18 C -0.13 -1.71 5.92 -90.58 -0.54 -2.24 15 19 H 0.12 1.72 7.67 -51.93 -0.40 1.33 15 20 C -0.12 -1.19 10.19 37.16 0.38 -0.81 15 21 H 0.04 0.93 8.14 -51.93 -0.42 0.51 15 22 H 0.10 2.76 6.07 -51.93 -0.32 2.44 15 23 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 15 24 H 0.27 7.17 8.31 -40.82 -0.34 6.83 15 25 H 0.10 1.40 8.14 -51.92 -0.42 0.97 15 26 H 0.11 1.08 8.05 -51.93 -0.42 0.66 15 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 15 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 15 29 H 0.06 0.50 7.90 -51.93 -0.41 0.09 15 LS Contribution 255.15 15.07 3.85 3.85 Total: -1.00 -31.13 255.15 -6.04 -37.17 By element: Atomic # 1 Polarization: 3.09 SS G_CDS: -3.99 Total: -0.91 kcal Atomic # 6 Polarization: -8.20 SS G_CDS: -0.82 Total: -9.02 kcal Atomic # 7 Polarization: -25.68 SS G_CDS: 0.63 Total: -25.06 kcal Atomic # 8 Polarization: -21.68 SS G_CDS: -0.68 Total: -22.35 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -31.13 -6.04 -37.17 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382200114.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.381 kcal (2) G-P(sol) polarization free energy of solvation -31.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds