Wall clock time and date at job start Mon Mar 30 2020 02:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.47196 * 2 1 4 4 C 1.50703 * 109.46980 * 119.99435 * 2 1 3 5 5 H 1.08005 * 119.99911 * 120.00464 * 4 2 1 6 6 C 1.37874 * 120.00198 * 299.99947 * 4 2 1 7 7 N 1.31514 * 120.00005 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00194 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.46845 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46889 * 120.00329 * 8 6 4 11 11 H 1.48497 * 109.47442 * 240.00410 * 8 6 4 12 12 O 1.45200 * 109.47768 * 239.99891 * 2 1 3 13 13 C 1.34225 * 117.00401 * 89.99702 * 12 2 1 14 14 O 1.20826 * 119.99751 * 0.02562 * 13 12 2 15 15 C 1.50697 * 120.00155 * 180.02562 * 13 12 2 16 16 H 1.09002 * 115.54932 * 34.41776 * 15 13 12 17 17 C 1.53000 * 117.50034 * 248.74712 * 15 13 12 18 18 C 1.53002 * 117.49992 * 180.08939 * 15 13 12 19 19 H 1.08999 * 117.49664 * 0.02562 * 18 15 13 20 20 C 1.52999 * 117.49968 * 215.00707 * 18 15 13 21 21 H 1.09005 * 109.47196 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47661 * 300.00524 * 1 2 3 23 23 H 1.08999 * 109.46959 * 60.00713 * 1 2 3 24 24 H 0.96998 * 120.00439 * 179.97438 * 7 6 4 25 25 H 1.09008 * 117.49673 * 359.97438 * 17 15 13 26 26 H 1.08999 * 117.49942 * 144.97208 * 17 15 13 27 27 H 1.08997 * 109.47537 * 59.99390 * 20 18 15 28 28 H 1.09001 * 109.46849 * 180.02562 * 20 18 15 29 29 H 1.09005 * 109.46784 * 299.99609 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1316 6 6 1.6992 -0.2392 2.4828 7 7 0.9427 0.8298 2.6034 8 14 2.3212 -1.1200 4.0081 9 1 3.1463 -2.2867 3.6040 10 1 3.1464 -0.1869 4.8166 11 1 1.1660 -1.5863 4.8162 12 8 2.0141 -0.6845 -1.1855 13 6 2.2172 0.0639 -2.2811 14 8 1.9982 1.2517 -2.2504 15 6 2.7185 -0.5774 -3.5493 16 1 2.3648 -1.5915 -3.7349 17 6 4.1376 -0.2299 -4.0036 18 6 2.9320 0.3295 -4.7630 19 1 2.7104 1.3901 -4.6439 20 6 2.6326 -0.2564 -6.1442 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5137 -0.8900 24 1 0.7080 1.1611 3.4843 25 1 4.7085 0.4629 -3.3853 26 1 4.7176 -1.0156 -4.4877 27 1 1.5866 -0.5593 -6.1915 28 1 2.8283 0.4959 -6.9082 29 1 3.2701 -1.1236 -6.3169 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382200114.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:57 Heat of formation + Delta-G solvation = -95.927487 kcal Electronic energy + Delta-G solvation = -12523.309400 eV Core-core repulsion = 10218.248519 eV Total energy + Delta-G solvation = -2305.060880 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.47526 -38.66045 -37.13526 -35.35676 -31.79011 -29.67140 -27.51005 -25.98602 -23.12250 -21.83328 -20.89028 -18.97963 -18.51995 -17.53082 -16.82740 -16.48981 -15.23804 -15.08841 -14.45909 -14.28346 -13.92271 -13.63958 -13.23492 -13.05589 -12.90044 -12.85096 -12.43003 -12.34834 -12.15918 -11.64510 -11.49581 -11.25851 -11.08083 -10.97054 -10.63322 -8.31629 -6.49224 1.18757 1.40525 1.41826 1.55778 1.95036 2.39484 2.77020 2.98901 3.66422 3.80111 3.83338 4.17328 4.38184 4.48655 4.70027 4.73765 4.79231 4.85668 4.94984 5.02115 5.13480 5.20596 5.42338 5.45380 5.58509 5.87940 6.04951 6.56488 6.94294 7.23191 8.76633 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.069082 B = 0.007772 C = 0.007376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 405.219675 B = 3601.695407 C = 3795.103088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.214 3.786 3 H 0.005 0.995 4 C -0.550 4.550 5 H 0.068 0.932 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.987 3.013 9 H -0.263 1.263 10 H -0.275 1.275 11 H -0.270 1.270 12 O -0.361 6.361 13 C 0.471 3.529 14 O -0.559 6.559 15 C -0.183 4.183 16 H 0.154 0.846 17 C -0.131 4.131 18 C -0.117 4.117 19 H 0.095 0.905 20 C -0.116 4.116 21 H 0.047 0.953 22 H 0.082 0.918 23 H 0.022 0.978 24 H 0.272 0.728 25 H 0.085 0.915 26 H 0.146 0.854 27 H 0.064 0.936 28 H 0.079 0.921 29 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.241 -4.629 -12.279 13.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.161 3.839 3 H 0.023 0.977 4 C -0.587 4.587 5 H 0.086 0.914 6 C -0.185 4.185 7 N -0.556 5.556 8 Si 0.810 3.190 9 H -0.187 1.187 10 H -0.200 1.200 11 H -0.195 1.195 12 O -0.278 6.278 13 C 0.317 3.683 14 O -0.451 6.451 15 C -0.202 4.202 16 H 0.171 0.829 17 C -0.168 4.168 18 C -0.136 4.136 19 H 0.113 0.887 20 C -0.173 4.173 21 H 0.066 0.934 22 H 0.101 0.899 23 H 0.041 0.959 24 H 0.081 0.919 25 H 0.104 0.896 26 H 0.164 0.836 27 H 0.083 0.917 28 H 0.098 0.902 29 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 4.072 -4.174 -12.091 13.423 hybrid contribution -0.139 0.254 1.179 1.214 sum 3.933 -3.920 -10.912 12.243 Atomic orbital electron populations 1.21983 0.96677 1.00486 1.00806 1.20389 0.92154 0.92031 0.79318 0.97711 1.21330 1.33514 1.13941 0.89916 0.91420 1.25890 0.94652 0.95678 1.02269 1.70026 1.36551 1.23719 1.25273 0.85075 0.78383 0.78382 0.77186 1.18659 1.20015 1.19494 1.86466 1.76010 1.43818 1.21458 1.23585 0.73438 0.85233 0.86065 1.90553 1.50632 1.18654 1.85303 1.22013 1.05150 1.02902 0.90115 0.82875 1.23343 0.88437 1.03609 1.01402 1.22600 1.00603 0.98225 0.92145 0.88702 1.21421 1.02494 1.01667 0.91674 0.93392 0.89916 0.95928 0.91902 0.89604 0.83633 0.91715 0.90232 0.90160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.61 9.33 71.98 0.67 -6.94 15 2 C 0.21 12.33 2.56 29.85 0.08 12.41 15 3 H 0.01 0.33 7.16 -2.38 -0.02 0.31 15 4 C -0.55 -32.17 8.90 25.60 0.23 -31.94 15 5 H 0.07 3.88 7.81 -2.91 -0.02 3.86 15 6 C 0.01 0.83 5.30 84.65 0.45 1.27 15 7 N -0.92 -53.71 11.32 21.45 0.24 -53.47 15 8 Si 0.99 43.44 29.54 68.60 2.03 45.47 15 9 H -0.26 -11.15 7.11 99.48 0.71 -10.45 15 10 H -0.27 -11.73 7.11 99.48 0.71 -11.03 15 11 H -0.27 -11.34 7.11 99.48 0.71 -10.64 15 12 O -0.36 -18.48 9.86 -51.37 -0.51 -18.98 15 13 C 0.47 21.16 7.71 71.24 0.55 21.71 15 14 O -0.56 -28.62 15.48 21.96 0.34 -28.28 15 15 C -0.18 -5.60 6.02 -11.54 -0.07 -5.67 15 16 H 0.15 3.90 8.14 -2.39 -0.02 3.88 15 17 C -0.13 -3.12 9.88 30.62 0.30 -2.82 15 18 C -0.12 -2.89 5.92 -10.77 -0.06 -2.96 15 19 H 0.09 2.78 7.67 -2.39 -0.02 2.76 15 20 C -0.12 -1.86 10.19 71.98 0.73 -1.13 15 21 H 0.05 2.40 8.14 -2.38 -0.02 2.38 15 22 H 0.08 4.71 6.07 -2.39 -0.01 4.70 15 23 H 0.02 1.12 8.14 -2.39 -0.02 1.10 15 24 H 0.27 14.74 8.31 -92.71 -0.77 13.96 15 25 H 0.09 2.31 8.14 -2.38 -0.02 2.29 15 26 H 0.15 2.32 8.05 -2.39 -0.02 2.30 15 27 H 0.06 1.05 8.14 -2.39 -0.02 1.03 15 28 H 0.08 1.07 8.14 -2.39 -0.02 1.05 15 29 H 0.08 0.98 7.90 -2.38 -0.02 0.96 15 Total: -1.00 -68.98 255.15 6.10 -62.88 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: 1.12 Total: 8.46 kcal Atomic # 6 Polarization: -18.94 SS G_CDS: 2.88 Total: -16.07 kcal Atomic # 7 Polarization: -53.71 SS G_CDS: 0.24 Total: -53.47 kcal Atomic # 8 Polarization: -47.10 SS G_CDS: -0.17 Total: -47.27 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -68.98 6.10 -62.88 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382200114.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.051 kcal (2) G-P(sol) polarization free energy of solvation -68.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds