Wall clock time and date at job start Mon Mar 30 2020 02:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86795 * 120.00356 * 2 1 4 4 H 1.48506 * 109.47175 * 269.99895 * 3 2 1 5 5 H 1.48503 * 109.46992 * 29.99326 * 3 2 1 6 6 H 1.48497 * 109.47376 * 149.99795 * 3 2 1 7 7 C 1.37880 * 119.99711 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99788 * 180.02562 * 7 2 1 10 10 H 1.09002 * 109.47152 * 59.99933 * 9 7 2 11 11 C 1.53005 * 109.47304 * 179.97438 * 9 7 2 12 12 C 1.52997 * 109.47452 * 180.02562 * 11 9 7 13 13 C 1.53002 * 109.46817 * 300.00239 * 12 11 9 14 14 H 1.08992 * 109.47063 * 299.99823 * 13 12 11 15 15 C 1.50706 * 109.46783 * 179.97438 * 13 12 11 16 16 O 1.20819 * 120.00296 * 239.99520 * 15 13 12 17 17 O 1.34229 * 119.99505 * 60.00307 * 15 13 12 18 18 C 1.53000 * 109.47233 * 60.00194 * 13 12 11 19 19 C 1.52997 * 109.47060 * 299.99657 * 18 13 12 20 20 H 0.96996 * 120.00124 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.46935 * 59.99966 * 11 9 7 22 22 H 1.09001 * 109.46812 * 300.00308 * 11 9 7 23 23 H 1.08993 * 109.47194 * 179.97438 * 12 11 9 24 24 H 1.09002 * 109.46695 * 59.99734 * 12 11 9 25 25 H 0.96704 * 117.00003 * 179.97438 * 17 15 13 26 26 H 1.09002 * 109.47398 * 59.99826 * 18 13 12 27 27 H 1.09001 * 109.47194 * 180.02562 * 18 13 12 28 28 H 1.08996 * 109.47853 * 180.02562 * 19 18 13 29 29 H 1.09002 * 109.47153 * 300.00319 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 1 3.8745 -0.6801 0.8911 11 6 4.0215 -2.6367 0.0023 12 6 5.5515 -2.6367 0.0035 13 6 6.0625 -1.9161 -1.2457 14 1 5.6999 -2.4303 -2.1356 15 6 7.5695 -1.9156 -1.2441 16 8 8.1733 -0.8691 -1.2443 17 8 8.2410 -3.0779 -1.2428 18 6 5.5525 -0.4735 -1.2468 19 6 4.0226 -0.4735 -1.2480 20 1 -0.4850 0.8400 -0.0004 21 1 3.6585 -3.1511 -0.8875 22 1 3.6578 -3.1499 0.8925 23 1 5.9148 -3.6643 0.0048 24 1 5.9141 -2.1224 0.8935 25 1 9.2067 -3.0270 -1.2422 26 1 5.9152 0.0407 -0.3568 27 1 5.9162 0.0397 -2.1370 28 1 3.6592 0.5541 -1.2492 29 1 3.6599 -0.9878 -2.1380 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575431723.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:26 Heat of formation + Delta-G solvation = -115.917294 kcal Electronic energy + Delta-G solvation = -12958.214847 eV Core-core repulsion = 10652.287144 eV Total energy + Delta-G solvation = -2305.927703 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.35920 -37.64694 -36.01214 -32.92625 -30.65697 -30.21415 -25.68009 -22.69206 -22.21776 -20.28549 -19.05792 -17.90913 -16.65915 -16.52166 -15.63564 -14.80289 -13.69995 -13.54493 -13.43430 -13.04407 -12.66253 -11.87348 -11.80085 -11.68042 -11.46621 -11.04634 -10.70404 -10.59021 -10.32865 -10.02499 -9.82731 -9.58065 -9.04382 -8.91755 -8.50733 -6.06075 -4.05059 2.32083 3.16897 3.28843 3.40686 3.42557 4.42677 4.96232 5.08044 5.26455 5.27766 5.64819 5.81980 5.95794 6.05702 6.13211 6.18049 6.22788 6.46626 6.50743 6.60722 6.74148 6.86870 6.96281 7.26186 7.55496 7.78965 7.98680 8.53779 8.98314 9.57027 11.07273 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.059023 B = 0.010470 C = 0.009266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 474.276852 B = 2673.780220 C = 3021.006323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.069 3.931 3 Si 0.885 3.115 4 H -0.279 1.279 5 H -0.298 1.298 6 H -0.264 1.264 7 C -0.513 4.513 8 H 0.074 0.926 9 C 0.010 3.990 10 H 0.027 0.973 11 C -0.097 4.097 12 C -0.110 4.110 13 C -0.074 4.074 14 H 0.108 0.892 15 C 0.482 3.518 16 O -0.521 6.521 17 O -0.518 6.518 18 C -0.106 4.106 19 C -0.120 4.120 20 H 0.263 0.737 21 H 0.058 0.942 22 H 0.061 0.939 23 H 0.065 0.935 24 H 0.061 0.939 25 H 0.403 0.597 26 H 0.065 0.935 27 H 0.059 0.941 28 H 0.051 0.949 29 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.149 -4.385 -2.272 14.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.133 4.133 3 Si 0.715 3.285 4 H -0.206 1.206 5 H -0.226 1.226 6 H -0.189 1.189 7 C -0.551 4.551 8 H 0.092 0.908 9 C -0.008 4.008 10 H 0.045 0.955 11 C -0.135 4.135 12 C -0.148 4.148 13 C -0.093 4.093 14 H 0.126 0.874 15 C 0.325 3.675 16 O -0.409 6.409 17 O -0.329 6.329 18 C -0.144 4.144 19 C -0.157 4.157 20 H 0.073 0.927 21 H 0.077 0.923 22 H 0.080 0.920 23 H 0.084 0.916 24 H 0.080 0.920 25 H 0.260 0.740 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 12.713 -4.009 -2.265 13.522 hybrid contribution 1.073 1.066 -0.118 1.517 sum 13.787 -2.943 -2.383 14.297 Atomic orbital electron populations 1.69900 1.06307 1.26902 1.50994 1.25030 0.94671 0.99052 0.94505 0.86879 0.79989 0.83636 0.77948 1.20579 1.22591 1.18931 1.21067 0.88864 0.94421 1.50720 0.90831 1.19204 0.96587 0.91871 0.93182 0.95460 1.21457 0.91059 0.99324 1.01651 1.21618 0.98772 0.99267 0.95097 1.21158 0.84965 1.00622 1.02573 0.87444 1.24003 0.92213 0.80563 0.70768 1.90681 1.70773 1.33443 1.45989 1.84594 1.26105 1.36474 1.85720 1.21562 0.97934 0.92574 1.02294 1.22012 0.91306 1.00744 1.01660 0.92713 0.92300 0.92039 0.91596 0.92009 0.73956 0.91673 0.92239 0.93067 0.91865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.54 13.96 55.43 0.77 -26.76 15 2 C 0.07 1.97 5.45 -17.82 -0.10 1.87 15 3 Si 0.88 21.99 24.37 -169.99 -4.14 17.85 15 4 H -0.28 -6.75 6.87 56.52 0.39 -6.36 15 5 H -0.30 -7.47 7.11 56.52 0.40 -7.06 15 6 H -0.26 -6.32 6.53 56.52 0.37 -5.95 15 7 C -0.51 -14.09 9.14 -34.44 -0.31 -14.41 15 8 H 0.07 2.18 7.99 -52.49 -0.42 1.76 15 9 C 0.01 0.23 1.69 -91.77 -0.16 0.08 15 10 H 0.03 0.64 7.20 -51.93 -0.37 0.27 15 11 C -0.10 -1.81 5.14 -26.73 -0.14 -1.95 15 12 C -0.11 -1.70 5.14 -26.73 -0.14 -1.83 15 13 C -0.07 -1.14 2.63 -91.77 -0.24 -1.38 15 14 H 0.11 1.50 8.14 -51.93 -0.42 1.07 15 15 C 0.48 7.04 7.63 36.01 0.27 7.31 15 16 O -0.52 -9.06 16.74 -18.74 -0.31 -9.38 15 17 O -0.52 -5.83 13.33 -39.25 -0.52 -6.36 15 18 C -0.11 -1.89 4.49 -26.73 -0.12 -2.01 15 19 C -0.12 -2.51 4.68 -26.73 -0.13 -2.63 15 20 H 0.26 7.56 8.31 -40.82 -0.34 7.22 15 21 H 0.06 1.07 8.14 -51.93 -0.42 0.65 15 22 H 0.06 1.13 8.14 -51.93 -0.42 0.71 15 23 H 0.07 0.88 8.11 -51.93 -0.42 0.46 15 24 H 0.06 0.96 8.14 -51.93 -0.42 0.54 15 25 H 0.40 2.69 9.10 45.56 0.41 3.11 15 26 H 0.06 1.22 8.10 -51.93 -0.42 0.80 15 27 H 0.06 1.01 8.10 -51.93 -0.42 0.59 15 28 H 0.05 1.16 3.28 -51.93 -0.17 0.99 15 29 H 0.06 1.28 8.14 -51.93 -0.42 0.86 15 LS Contribution 235.79 15.07 3.55 3.55 Total: -1.00 -31.58 235.79 -4.81 -36.40 By element: Atomic # 1 Polarization: 2.75 SS G_CDS: -3.11 Total: -0.36 kcal Atomic # 6 Polarization: -13.89 SS G_CDS: -1.05 Total: -14.95 kcal Atomic # 7 Polarization: -27.54 SS G_CDS: 0.77 Total: -26.76 kcal Atomic # 8 Polarization: -14.90 SS G_CDS: -0.84 Total: -15.73 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.14 Total: 17.85 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -31.58 -4.81 -36.40 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575431723.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.521 kcal (2) G-P(sol) polarization free energy of solvation -31.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds