Wall clock time and date at job start Mon Mar 30 2020 01:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30662 * 1 3 3 Si 1.86802 * 120.00395 * 2 1 4 4 H 1.48508 * 109.46866 * 89.99937 * 3 2 1 5 5 H 1.48505 * 109.46882 * 330.00482 * 3 2 1 6 6 H 1.48494 * 109.47713 * 210.00017 * 3 2 1 7 7 C 1.40050 * 119.99939 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00325 * 12.78477 * 7 2 1 9 9 C 1.46384 * 119.99980 * 192.78775 * 7 2 1 10 10 O 1.21688 * 119.99718 * 8.46878 * 9 7 2 11 11 N 1.34774 * 119.99992 * 188.46693 * 9 7 2 12 12 C 1.46498 * 119.99918 * 180.02562 * 11 9 7 13 13 H 1.08997 * 110.43761 * 34.29856 * 12 11 9 14 14 C 1.54630 * 110.48635 * 156.84241 * 12 11 9 15 15 C 1.54476 * 101.76688 * 143.47422 * 14 12 11 16 16 N 1.46766 * 105.47077 * 334.58039 * 15 14 12 17 17 C 1.34656 * 111.33902 * 17.13202 * 16 15 14 18 18 O 1.21277 * 125.07501 * 179.53781 * 17 16 15 19 19 H 0.96999 * 120.00561 * 174.71633 * 1 2 3 20 20 H 0.97007 * 119.99752 * 359.97438 * 11 9 7 21 21 H 1.09000 * 110.96723 * 261.59375 * 14 12 11 22 22 H 1.09006 * 110.96867 * 25.31390 * 14 12 11 23 23 H 1.08993 * 110.24724 * 93.58297 * 15 14 12 24 24 H 1.08999 * 110.24581 * 215.58274 * 15 14 12 25 25 H 0.97001 * 124.34341 * 197.01590 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.4882 2.0463 1.4002 5 1 1.4381 2.6527 -0.7000 6 1 3.5383 1.4402 -0.7000 7 6 2.0069 -1.2129 -0.0005 8 1 1.4870 -2.1365 -0.2079 9 6 3.4435 -1.2287 0.2800 10 8 3.9996 -0.2167 0.6638 11 7 4.1501 -2.3642 0.1134 12 6 5.5878 -2.3802 0.3947 13 1 5.8200 -1.7164 1.2275 14 6 6.0633 -3.8193 0.7008 15 6 7.4633 -3.8340 0.0481 16 7 7.4129 -2.8176 -1.0094 17 6 6.3724 -1.9808 -0.8355 18 8 6.1015 -1.0459 -1.5590 19 1 -0.4851 -0.8364 -0.0774 20 1 3.7066 -3.1710 -0.1922 21 1 6.1322 -3.9870 1.7756 22 1 5.4071 -4.5544 0.2347 23 1 8.2251 -3.5757 0.7835 24 1 7.6692 -4.8147 -0.3808 25 1 8.0487 -2.7553 -1.7393 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575521677.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:40 Heat of formation + Delta-G solvation = -86.334299 kcal Electronic energy + Delta-G solvation = -12628.385030 eV Core-core repulsion = 10220.199798 eV Total energy + Delta-G solvation = -2408.185232 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 198.079 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.06529 -37.40471 -36.01959 -33.34464 -32.72929 -29.81939 -27.20005 -25.38889 -21.88590 -20.62625 -19.43036 -17.99460 -17.08468 -16.28395 -15.39746 -15.01823 -14.00946 -13.75210 -13.54484 -13.43480 -12.68999 -12.38555 -12.37424 -11.99902 -11.79405 -10.94081 -10.51944 -10.09278 -9.63147 -9.19045 -8.95066 -8.82421 -7.92333 -7.82466 -6.94301 -4.85047 2.96906 3.48699 3.66362 3.76019 4.16781 4.35895 4.37371 4.59618 4.68427 4.78636 5.03856 5.15526 5.41662 5.59602 5.65832 5.85336 6.11628 6.99633 7.18843 7.52095 7.64377 7.80446 8.15775 8.62163 8.89958 9.08037 10.14273 10.39312 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.060858 B = 0.010975 C = 0.009994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.975067 B = 2550.588165 C = 2801.139898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.834 5.834 2 C 0.066 3.934 3 Si 1.115 2.885 4 H -0.288 1.288 5 H -0.320 1.320 6 H -0.268 1.268 7 C -0.599 4.599 8 H 0.069 0.931 9 C 0.555 3.445 10 O -0.607 6.607 11 N -0.738 5.738 12 C 0.123 3.877 13 H 0.115 0.885 14 C -0.140 4.140 15 C 0.108 3.892 16 N -0.746 5.746 17 C 0.501 3.499 18 O -0.504 6.504 19 H 0.277 0.723 20 H 0.390 0.610 21 H 0.093 0.907 22 H 0.084 0.916 23 H 0.069 0.931 24 H 0.076 0.924 25 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.446 -10.346 0.962 16.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C -0.152 4.152 3 Si 0.945 3.055 4 H -0.215 1.215 5 H -0.252 1.252 6 H -0.194 1.194 7 C -0.635 4.635 8 H 0.088 0.912 9 C 0.363 3.637 10 O -0.498 6.498 11 N -0.390 5.390 12 C 0.013 3.987 13 H 0.133 0.867 14 C -0.179 4.179 15 C -0.017 4.017 16 N -0.405 5.405 17 C 0.284 3.716 18 O -0.375 6.375 19 H 0.088 0.912 20 H 0.223 0.777 21 H 0.112 0.888 22 H 0.103 0.897 23 H 0.088 0.912 24 H 0.094 0.906 25 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 12.318 -7.579 1.017 14.499 hybrid contribution 0.257 -2.471 -0.526 2.539 sum 12.575 -10.050 0.491 16.104 Atomic orbital electron populations 1.70638 1.07658 1.32077 1.35792 1.27063 0.95197 1.04830 0.88104 0.82722 0.73903 0.70974 0.77860 1.21500 1.25162 1.19400 1.21966 0.91709 0.96836 1.53030 0.91232 1.18411 0.87692 0.80769 0.76784 1.90233 1.72258 1.32631 1.54666 1.45673 1.04673 1.14622 1.74078 1.21226 0.84685 0.96691 0.96139 0.86741 1.22905 0.95818 0.96737 1.02405 1.21940 0.97687 0.91983 0.90122 1.46330 1.31463 1.33079 1.29611 1.21845 0.80855 0.81435 0.87423 1.90768 1.69278 1.28232 1.49271 0.91223 0.77705 0.88837 0.89701 0.91232 0.90598 0.75894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.83 13.64 55.55 0.76 -24.07 15 2 C 0.07 1.97 5.52 -17.37 -0.10 1.88 15 3 Si 1.11 31.06 26.39 -169.99 -4.49 26.58 15 4 H -0.29 -7.94 7.11 56.52 0.40 -7.54 15 5 H -0.32 -8.51 7.11 56.52 0.40 -8.11 15 6 H -0.27 -7.96 6.45 56.52 0.36 -7.60 15 7 C -0.60 -17.53 9.92 -35.63 -0.35 -17.89 15 8 H 0.07 1.98 8.06 -52.49 -0.42 1.55 15 9 C 0.56 15.40 7.49 -12.98 -0.10 15.30 15 10 O -0.61 -18.35 11.89 5.20 0.06 -18.29 15 11 N -0.74 -16.00 5.14 -55.22 -0.28 -16.28 15 12 C 0.12 2.21 3.24 -67.94 -0.22 1.99 15 13 H 0.11 2.21 7.61 -51.93 -0.40 1.82 15 14 C -0.14 -1.56 6.87 -25.10 -0.17 -1.73 15 15 C 0.11 0.99 7.78 -3.12 -0.02 0.96 15 16 N -0.75 -9.71 6.25 -59.15 -0.37 -10.08 15 17 C 0.50 9.61 8.09 -10.75 -0.09 9.52 15 18 O -0.50 -12.60 18.02 5.56 0.10 -12.50 15 19 H 0.28 7.88 8.72 -40.82 -0.36 7.52 15 20 H 0.39 7.39 8.38 -40.82 -0.34 7.05 15 21 H 0.09 0.85 8.14 -51.93 -0.42 0.43 15 22 H 0.08 0.87 7.81 -51.93 -0.41 0.46 15 23 H 0.07 0.52 8.14 -51.93 -0.42 0.10 15 24 H 0.08 0.50 8.14 -51.93 -0.42 0.08 15 25 H 0.40 4.45 8.96 -40.82 -0.37 4.08 15 LS Contribution 224.88 15.07 3.39 3.39 Total: -1.00 -37.11 224.88 -4.27 -41.37 By element: Atomic # 1 Polarization: 2.23 SS G_CDS: -2.39 Total: -0.16 kcal Atomic # 6 Polarization: 11.09 SS G_CDS: -1.05 Total: 10.04 kcal Atomic # 7 Polarization: -50.53 SS G_CDS: 0.10 Total: -50.43 kcal Atomic # 8 Polarization: -30.95 SS G_CDS: 0.16 Total: -30.79 kcal Atomic # 14 Polarization: 31.06 SS G_CDS: -4.49 Total: 26.58 kcal Total LS contribution 3.39 Total: 3.39 kcal Total: -37.11 -4.27 -41.37 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575521677.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.959 kcal (2) G-P(sol) polarization free energy of solvation -37.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds