Wall clock time and date at job start Mon Mar 30 2020 01:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.47066 * 110.99835 * 2 1 4 4 C 1.50649 * 109.24881 * 293.45314 * 3 2 1 5 5 O 1.21223 * 119.67490 * 151.14771 * 4 3 2 6 6 N 1.34454 * 120.65485 * 331.16343 * 4 3 2 7 7 C 1.37495 * 119.31807 * 180.47157 * 6 4 3 8 8 H 1.07994 * 120.00111 * 318.05148 * 7 6 4 9 9 C 1.38922 * 119.99589 * 138.05410 * 7 6 4 10 10 N 1.31356 * 120.00146 * 340.51384 * 9 7 6 11 11 Si 1.86802 * 120.00134 * 160.51976 * 9 7 6 12 12 H 1.48498 * 109.47145 * 89.99507 * 11 9 7 13 13 H 1.48493 * 109.47022 * 210.00011 * 11 9 7 14 14 H 1.48507 * 109.46809 * 329.99818 * 11 9 7 15 15 C 1.34444 * 121.35683 * 0.75035 * 6 4 3 16 16 O 1.21223 * 119.66977 * 179.24353 * 15 6 4 17 17 C 1.47064 * 111.00237 * 236.86354 * 2 1 3 18 18 H 1.09005 * 109.46765 * 60.00170 * 1 2 3 19 19 H 1.09000 * 109.46830 * 179.97438 * 1 2 3 20 20 H 1.08997 * 109.47455 * 300.00072 * 1 2 3 21 21 H 1.09008 * 109.51068 * 173.51964 * 3 2 1 22 22 H 1.09002 * 109.54923 * 53.41307 * 3 2 1 23 23 H 0.97000 * 120.00573 * 179.97438 * 10 9 7 24 24 H 1.09004 * 109.50918 * 186.47727 * 17 2 1 25 25 H 1.08998 * 109.51329 * 306.56904 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9960 1.3730 0.0000 4 6 1.6455 2.0395 -1.3048 5 8 1.4957 3.2418 -1.3433 6 7 1.4969 1.3140 -2.4270 7 6 1.1864 1.9518 -3.6048 8 1 0.4554 2.7466 -3.6120 9 6 1.8131 1.5735 -4.7856 10 7 2.9432 0.9052 -4.7445 11 14 1.0487 2.0155 -6.4318 12 1 1.5591 3.3375 -6.8755 13 1 1.4077 0.9834 -7.4372 14 1 -0.4284 2.0769 -6.2911 15 6 1.6403 -0.0228 -2.4199 16 8 1.4859 -0.6482 -3.4468 17 6 1.9961 -0.7505 -1.1497 18 1 -0.3633 0.5138 -0.8901 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3634 0.5138 0.8899 21 1 3.0796 1.3470 0.1160 22 1 1.5551 1.9329 0.8248 23 1 3.3806 0.6408 -5.5689 24 1 3.0797 -0.8333 -1.0645 25 1 1.5552 -1.7472 -1.1669 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000606249168.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:22 Heat of formation + Delta-G solvation = -43.161442 kcal Electronic energy + Delta-G solvation = -13263.736327 eV Core-core repulsion = 10857.423211 eV Total energy + Delta-G solvation = -2406.313116 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 198.079 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.54468 -37.30003 -36.29519 -33.88820 -31.73970 -28.30300 -27.99248 -25.24833 -22.52897 -21.96865 -18.84498 -16.96907 -16.70054 -15.63363 -15.01676 -14.66444 -14.46877 -14.22582 -13.46417 -13.22818 -12.47889 -12.38751 -11.64294 -11.52241 -11.41276 -11.13957 -10.98163 -10.70490 -10.40678 -10.10232 -9.12775 -8.79422 -8.09796 -7.72446 -6.41584 -4.21922 2.75963 3.21985 3.28607 3.33454 3.73871 4.18574 4.31123 4.60149 4.75937 5.17404 5.31627 5.53583 5.64211 5.80358 5.89060 5.93382 6.09823 6.29708 6.90065 6.99522 7.49378 7.96703 8.12221 8.68891 8.95943 9.31773 9.66947 10.69935 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.049014 B = 0.015072 C = 0.013209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.133600 B = 1857.285569 C = 2119.336575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.526 5.526 3 C 0.032 3.968 4 C 0.454 3.546 5 O -0.530 6.530 6 N -0.402 5.402 7 C -0.372 4.372 8 H 0.095 0.905 9 C 0.077 3.923 10 N -0.837 5.837 11 Si 0.926 3.074 12 H -0.277 1.277 13 H -0.281 1.281 14 H -0.268 1.268 15 C 0.462 3.538 16 O -0.482 6.482 17 C 0.033 3.967 18 H 0.036 0.964 19 H 0.073 0.927 20 H 0.073 0.927 21 H 0.108 0.892 22 H 0.107 0.893 23 H 0.271 0.729 24 H 0.106 0.894 25 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.739 -3.264 7.408 8.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 N -0.250 5.250 3 C -0.099 4.099 4 C 0.243 3.757 5 O -0.406 6.406 6 N -0.133 5.133 7 C -0.497 4.497 8 H 0.113 0.887 9 C -0.134 4.134 10 N -0.470 5.470 11 Si 0.751 3.249 12 H -0.203 1.203 13 H -0.206 1.206 14 H -0.192 1.192 15 C 0.250 3.750 16 O -0.353 6.353 17 C -0.098 4.098 18 H 0.055 0.945 19 H 0.092 0.908 20 H 0.091 0.909 21 H 0.126 0.874 22 H 0.126 0.874 23 H 0.081 0.919 24 H 0.124 0.876 25 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -1.583 -3.339 7.159 8.056 hybrid contribution -0.358 0.545 -1.569 1.699 sum -1.941 -2.794 5.589 6.543 Atomic orbital electron populations 1.22554 0.86874 1.02620 1.01617 1.62564 1.08810 1.12823 1.40843 1.22701 1.03069 0.88516 0.95605 1.21891 0.78447 0.88259 0.87102 1.90550 1.48485 1.14983 1.86607 1.42400 1.55750 1.06063 1.09059 1.19281 1.25445 1.21617 0.83341 0.88715 1.25258 0.93423 0.94576 1.00154 1.69839 1.13342 1.34393 1.29432 0.85993 0.79948 0.77836 0.81100 1.20279 1.20588 1.19223 1.21501 0.79546 0.83004 0.90978 1.90549 1.44699 1.65897 1.34127 1.22694 1.02952 0.98368 0.85809 0.94517 0.90808 0.90861 0.87357 0.87439 0.91901 0.87587 0.87430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 9.16 60.07 0.55 0.72 15 2 N -0.53 -8.40 5.28 -245.58 -1.30 -9.70 15 3 C 0.03 0.55 5.96 -4.91 -0.03 0.52 15 4 C 0.45 10.71 6.57 -11.15 -0.07 10.63 15 5 O -0.53 -14.12 16.91 5.61 0.09 -14.02 15 6 N -0.40 -10.56 2.34 -60.82 -0.14 -10.71 15 7 C -0.37 -10.86 8.53 -14.76 -0.13 -10.98 15 8 H 0.10 2.80 7.80 -52.49 -0.41 2.39 15 9 C 0.08 2.21 4.29 -17.50 -0.08 2.13 15 10 N -0.84 -24.66 11.62 55.49 0.64 -24.01 15 11 Si 0.93 22.18 29.59 -169.99 -5.03 17.15 15 12 H -0.28 -6.43 7.11 56.52 0.40 -6.03 15 13 H -0.28 -6.62 7.11 56.52 0.40 -6.22 15 14 H -0.27 -6.31 7.11 56.52 0.40 -5.91 15 15 C 0.46 11.27 5.93 -11.15 -0.07 11.21 15 16 O -0.48 -13.48 14.57 5.61 0.08 -13.40 15 17 C 0.03 0.59 5.97 -4.91 -0.03 0.56 15 18 H 0.04 0.66 6.49 -51.93 -0.34 0.33 15 19 H 0.07 0.96 8.11 -51.93 -0.42 0.53 15 20 H 0.07 0.93 8.14 -51.93 -0.42 0.50 15 21 H 0.11 1.67 8.14 -51.92 -0.42 1.24 15 22 H 0.11 1.59 8.12 -51.93 -0.42 1.17 15 23 H 0.27 7.53 8.31 -40.82 -0.34 7.19 15 24 H 0.11 1.75 8.14 -51.93 -0.42 1.32 15 25 H 0.11 1.69 8.09 -51.93 -0.42 1.27 15 LS Contribution 219.38 15.07 3.31 3.31 Total: -1.00 -34.20 219.38 -4.60 -38.80 By element: Atomic # 1 Polarization: 0.20 SS G_CDS: -2.41 Total: -2.21 kcal Atomic # 6 Polarization: 14.64 SS G_CDS: 0.15 Total: 14.79 kcal Atomic # 7 Polarization: -43.63 SS G_CDS: -0.79 Total: -44.42 kcal Atomic # 8 Polarization: -27.60 SS G_CDS: 0.18 Total: -27.42 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.03 Total: 17.15 kcal Total LS contribution 3.31 Total: 3.31 kcal Total: -34.20 -4.60 -38.80 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606249168.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.362 kcal (2) G-P(sol) polarization free energy of solvation -34.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds