Wall clock time and date at job start Mon Mar 30 2020 01:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46496 * 109.47019 * 2 1 4 4 C 1.34775 * 124.17605 * 269.69636 * 3 2 1 5 5 O 1.21234 * 127.15722 * 0.24949 * 4 3 2 6 6 C 1.51583 * 105.68178 * 180.27329 * 4 3 2 7 7 N 1.47310 * 103.59486 * 359.97438 * 6 4 3 8 8 C 1.37149 * 126.68649 * 180.02562 * 7 6 4 9 9 H 1.08003 * 119.99659 * 174.19871 * 8 7 6 10 10 C 1.38906 * 120.00180 * 354.19377 * 8 7 6 11 11 N 1.31453 * 120.00159 * 6.72989 * 10 8 7 12 12 Si 1.86800 * 119.99916 * 186.72000 * 10 8 7 13 13 H 1.48504 * 109.46708 * 94.98947 * 12 10 8 14 14 H 1.48496 * 109.47172 * 214.98774 * 12 10 8 15 15 H 1.48500 * 109.47167 * 334.99520 * 12 10 8 16 16 C 1.33794 * 124.18129 * 90.00796 * 3 2 1 17 17 O 1.21542 * 123.76566 * 359.71827 * 16 3 2 18 18 H 1.09006 * 109.46962 * 299.99856 * 1 2 3 19 19 H 1.08999 * 109.47290 * 59.99988 * 1 2 3 20 20 H 1.09003 * 109.47283 * 180.02562 * 1 2 3 21 21 H 1.09006 * 109.46962 * 240.00144 * 2 1 3 22 22 H 1.08999 * 109.47290 * 120.00012 * 2 1 3 23 23 H 1.09001 * 110.59511 * 241.47259 * 6 4 3 24 24 H 1.09002 * 110.59864 * 118.53236 * 6 4 3 25 25 H 0.96993 * 120.00224 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2762 2.0930 -1.1150 5 8 2.1486 1.7266 -2.2636 6 6 2.7595 3.4469 -0.6341 7 7 2.7129 3.3299 0.8336 8 6 3.0556 4.2967 1.7439 9 1 2.8916 4.1284 2.7980 10 6 3.6139 5.4924 1.3102 11 7 3.6923 5.7529 0.0241 12 14 4.2532 6.7303 2.5545 13 1 5.7118 6.5295 2.7480 14 1 4.0050 8.1068 2.0557 15 1 3.5512 6.5386 3.8490 16 6 2.2689 2.0898 1.1068 17 8 2.1123 1.6612 2.2333 18 1 -0.3633 0.5138 0.8901 19 1 -0.3634 0.5138 -0.8900 20 1 -0.3634 -1.0277 0.0005 21 1 1.8933 -0.5138 -0.8901 22 1 1.8933 -0.5138 0.8900 23 1 2.0910 4.2366 -0.9770 24 1 3.7790 3.6324 -0.9723 25 1 4.0817 6.5880 -0.2788 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606249206.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:38 Heat of formation + Delta-G solvation = -60.171120 kcal Electronic energy + Delta-G solvation = -12842.840113 eV Core-core repulsion = 10435.789402 eV Total energy + Delta-G solvation = -2407.050711 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 198.079 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.99784 -39.35969 -37.20622 -36.49496 -34.26518 -31.78861 -29.03755 -26.89564 -24.57105 -23.39974 -20.98890 -19.74166 -17.97360 -17.71095 -17.39542 -16.74239 -15.93271 -15.46695 -15.04005 -14.86281 -14.77194 -14.51658 -13.55096 -13.43108 -13.10945 -12.85050 -12.59578 -12.15485 -12.09562 -11.45538 -11.30693 -11.02030 -10.68853 -10.09333 -8.47056 -6.04396 0.78636 1.42329 1.46328 1.54347 1.66824 2.16897 2.24746 2.76013 3.09100 3.49947 3.91489 4.20491 4.36675 4.48738 4.59295 4.61156 4.88085 5.02410 5.16560 5.21365 5.34005 6.01612 6.30472 6.57383 6.92704 7.13192 7.78860 8.62443 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.056303 B = 0.011744 C = 0.010047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.187911 B = 2383.603212 C = 2786.131646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.109 3.891 3 N -0.570 5.570 4 C 0.513 3.487 5 O -0.515 6.515 6 C 0.105 3.895 7 N -0.459 5.459 8 C -0.323 4.323 9 H 0.097 0.903 10 C -0.001 4.001 11 N -0.903 5.903 12 Si 1.007 2.993 13 H -0.270 1.270 14 H -0.271 1.271 15 H -0.268 1.268 16 C 0.621 3.379 17 O -0.624 6.624 18 H 0.043 0.957 19 H 0.052 0.948 20 H 0.105 0.895 21 H 0.105 0.895 22 H 0.091 0.909 23 H 0.115 0.885 24 H 0.118 0.882 25 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.780 -3.866 -1.674 4.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.011 4.011 3 N -0.316 5.316 4 C 0.302 3.698 5 O -0.390 6.390 6 C -0.021 4.021 7 N -0.182 5.182 8 C -0.449 4.449 9 H 0.115 0.885 10 C -0.203 4.203 11 N -0.541 5.541 12 Si 0.829 3.171 13 H -0.196 1.196 14 H -0.196 1.196 15 H -0.192 1.192 16 C 0.325 3.675 17 O -0.508 6.508 18 H 0.062 0.938 19 H 0.071 0.929 20 H 0.124 0.876 21 H 0.123 0.877 22 H 0.109 0.891 23 H 0.133 0.867 24 H 0.136 0.864 25 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.850 -4.071 -1.748 4.801 hybrid contribution 0.279 0.650 0.418 0.821 sum -1.571 -3.421 -1.331 3.993 Atomic orbital electron populations 1.22052 0.93757 1.04266 1.01450 1.21779 0.96250 0.78446 1.04663 1.46427 1.61305 1.16319 1.07506 1.21445 0.75671 0.88278 0.84421 1.90665 1.53437 1.76547 1.18371 1.22208 1.04970 0.93369 0.81596 1.43434 1.58522 1.10201 1.06009 1.19633 1.41258 0.94746 0.89267 0.88522 1.26136 0.95885 0.99099 0.99137 1.69872 1.43355 1.26506 1.14415 0.84699 0.78491 0.76472 0.77390 1.19565 1.19598 1.19217 1.15966 0.84730 0.82716 0.84107 1.90728 1.64097 1.74323 1.21683 0.93812 0.92856 0.87607 0.87711 0.89054 0.86736 0.86432 0.90817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.38 10.24 71.98 0.74 -3.64 15 2 C 0.11 3.49 6.42 86.38 0.55 4.04 15 3 N -0.57 -23.65 2.60 -773.12 -2.01 -25.66 15 4 C 0.51 21.45 8.32 87.94 0.73 22.19 15 5 O -0.52 -21.89 17.76 -2.89 -0.05 -21.94 15 6 C 0.10 4.74 5.62 85.76 0.48 5.22 15 7 N -0.46 -23.54 3.12 -654.32 -2.04 -25.58 15 8 C -0.32 -17.24 10.03 84.02 0.84 -16.40 15 9 H 0.10 5.32 7.78 -2.91 -0.02 5.30 15 10 C 0.00 -0.04 5.48 84.91 0.47 0.43 15 11 N -0.90 -44.52 10.60 21.66 0.23 -44.29 15 12 Si 1.01 39.27 29.56 68.60 2.03 41.29 15 13 H -0.27 -10.29 7.11 99.48 0.71 -9.59 15 14 H -0.27 -10.09 7.11 99.48 0.71 -9.39 15 15 H -0.27 -10.40 7.11 99.48 0.71 -9.69 15 16 C 0.62 30.89 8.26 179.44 1.48 32.37 15 17 O -0.62 -34.22 17.14 -3.85 -0.07 -34.28 15 18 H 0.04 1.38 8.14 -2.38 -0.02 1.36 15 19 H 0.05 1.52 8.14 -2.39 -0.02 1.50 15 20 H 0.11 2.13 8.14 -2.39 -0.02 2.11 15 21 H 0.10 2.90 8.00 -2.38 -0.02 2.88 15 22 H 0.09 2.88 7.86 -2.39 -0.02 2.86 15 23 H 0.11 5.26 7.72 -2.39 -0.02 5.24 15 24 H 0.12 5.42 7.47 -2.39 -0.02 5.40 15 25 H 0.28 12.94 8.31 -92.71 -0.77 12.17 15 Total: -1.00 -60.67 228.03 4.57 -56.10 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: 1.20 Total: 10.16 kcal Atomic # 6 Polarization: 38.91 SS G_CDS: 5.29 Total: 44.20 kcal Atomic # 7 Polarization: -91.70 SS G_CDS: -3.83 Total: -95.53 kcal Atomic # 8 Polarization: -56.11 SS G_CDS: -0.12 Total: -56.23 kcal Atomic # 14 Polarization: 39.27 SS G_CDS: 2.03 Total: 41.29 kcal Total: -60.67 4.57 -56.10 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606249206.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.075 kcal (2) G-P(sol) polarization free energy of solvation -60.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds