Wall clock time and date at job start Mon Mar 30 2020 02:23:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 115.56348 * 2 1 4 4 C 1.53079 * 117.50827 * 214.30262 * 2 1 3 5 5 C 1.52999 * 59.98441 * 252.52198 * 4 2 1 6 6 C 1.52998 * 117.49796 * 107.49924 * 5 4 2 7 7 C 1.50698 * 109.47434 * 210.76070 * 6 5 4 8 8 H 1.08008 * 119.99565 * 355.16694 * 7 6 5 9 9 C 1.37869 * 120.00436 * 175.16942 * 7 6 5 10 10 N 1.31512 * 119.99868 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 120.00150 * 179.72230 * 9 7 6 12 12 H 1.48500 * 109.47043 * 60.00335 * 11 9 7 13 13 H 1.48502 * 109.46945 * 179.97438 * 11 9 7 14 14 H 1.48492 * 109.47158 * 299.99678 * 11 9 7 15 15 C 1.50700 * 117.50189 * 252.50152 * 5 4 2 16 16 O 1.20827 * 119.99968 * 101.04152 * 15 5 4 17 17 O 1.34228 * 119.99752 * 281.04946 * 15 5 4 18 18 H 1.09005 * 109.46536 * 274.30951 * 1 2 3 19 19 H 1.09002 * 109.46993 * 34.30137 * 1 2 3 20 20 H 1.08994 * 109.47570 * 154.30757 * 1 2 3 21 21 H 1.08998 * 109.47244 * 205.69016 * 3 2 1 22 22 H 1.08994 * 109.47716 * 325.69692 * 3 2 1 23 23 H 1.09003 * 109.46829 * 85.69198 * 3 2 1 24 24 H 1.09006 * 117.49311 * 145.03579 * 4 2 1 25 25 H 1.08996 * 117.53323 * 359.97438 * 4 2 1 26 26 H 1.09009 * 109.46797 * 90.76097 * 6 5 4 27 27 H 1.08997 * 109.47104 * 330.76451 * 6 5 4 28 28 H 0.96998 * 120.00577 * 180.02562 * 10 9 7 29 29 H 0.96700 * 116.99659 * 179.97438 * 17 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3802 0.0000 4 6 2.2370 -1.1216 -0.7652 5 6 2.2365 -1.1211 0.7648 6 6 1.3588 -2.1563 1.4712 7 6 0.8802 -1.5961 2.7858 8 1 1.2349 -0.6335 3.1237 9 6 -0.0102 -2.3122 3.5571 10 7 -0.4425 -3.4841 3.1455 11 14 -0.5974 -1.6212 5.1903 12 1 -1.2836 -0.3243 4.9611 13 1 -1.5436 -2.5766 5.8206 14 1 0.5676 -1.4131 6.0873 15 6 3.5290 -0.7812 1.4611 16 8 3.6966 0.3249 1.9176 17 8 4.4941 -1.7073 1.5740 18 1 -0.3632 0.0772 1.0248 19 1 -0.3633 0.8490 -0.5792 20 1 -0.3634 -0.9260 -0.4455 21 1 3.1824 1.3084 -0.4455 22 1 1.5813 2.0743 -0.5791 23 1 2.2773 1.7413 1.0248 24 1 3.1723 -0.8756 -1.2682 25 1 1.6125 -1.8598 -1.2682 26 1 1.9384 -3.0617 1.6515 27 1 0.5001 -2.3937 0.8432 28 1 -1.0692 -3.9878 3.6879 29 1 5.3056 -1.4424 2.0285 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000642861105.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:29 Heat of formation + Delta-G solvation = -104.055601 kcal Electronic energy + Delta-G solvation = -13121.348074 eV Core-core repulsion = 10815.934732 eV Total energy + Delta-G solvation = -2305.413342 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.58921 -39.02646 -36.90873 -35.01310 -31.58906 -29.49582 -28.18754 -25.79493 -24.50036 -21.68595 -19.54392 -18.89418 -18.39333 -17.03200 -16.65158 -16.18393 -15.19238 -14.99377 -14.64400 -14.21374 -13.76821 -13.68667 -13.28175 -12.89283 -12.78806 -12.60896 -12.50728 -12.42071 -12.07795 -12.04111 -11.69768 -11.11715 -10.68750 -10.54811 -10.26360 -8.20026 -6.28157 1.30318 1.37761 1.39005 1.47219 2.23203 2.38938 2.78737 3.13958 3.74370 3.89756 4.06452 4.26273 4.58632 4.75510 4.85948 4.90129 5.07426 5.08517 5.13307 5.13665 5.39314 5.44640 5.54800 5.62056 5.72077 5.78116 6.20787 6.81840 7.14425 7.38904 8.90511 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.033539 B = 0.013187 C = 0.012061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.646868 B = 2122.733772 C = 2321.024988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.090 4.090 3 C -0.106 4.106 4 C -0.138 4.138 5 C -0.140 4.140 6 C 0.076 3.924 7 C -0.524 4.524 8 H 0.043 0.957 9 C 0.012 3.988 10 N -0.924 5.924 11 Si 0.949 3.051 12 H -0.269 1.269 13 H -0.278 1.278 14 H -0.277 1.277 15 C 0.530 3.470 16 O -0.541 6.541 17 O -0.511 6.511 18 H 0.045 0.955 19 H 0.081 0.919 20 H 0.053 0.947 21 H 0.053 0.947 22 H 0.080 0.920 23 H 0.050 0.950 24 H 0.112 0.888 25 H 0.111 0.889 26 H -0.004 1.004 27 H 0.026 0.974 28 H 0.265 0.735 29 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.987 5.510 -6.745 10.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.091 4.091 3 C -0.163 4.163 4 C -0.175 4.175 5 C -0.141 4.141 6 C 0.039 3.961 7 C -0.562 4.562 8 H 0.061 0.939 9 C -0.186 4.186 10 N -0.564 5.564 11 Si 0.775 3.225 12 H -0.194 1.194 13 H -0.203 1.203 14 H -0.202 1.202 15 C 0.374 3.626 16 O -0.431 6.431 17 O -0.324 6.324 18 H 0.064 0.936 19 H 0.099 0.901 20 H 0.072 0.928 21 H 0.072 0.928 22 H 0.098 0.902 23 H 0.069 0.931 24 H 0.130 0.870 25 H 0.129 0.871 26 H 0.014 0.986 27 H 0.044 0.956 28 H 0.074 0.926 29 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges 4.569 5.540 -6.772 9.871 hybrid contribution 0.243 0.059 1.529 1.549 sum 4.812 5.599 -5.244 9.056 Atomic orbital electron populations 1.21262 0.91106 1.01979 1.01811 1.21754 0.95771 0.91261 1.00275 1.21364 0.99420 0.93523 1.01946 1.23546 1.02926 1.00906 0.90135 1.21326 0.92616 1.05196 0.94996 1.18420 0.92607 0.90938 0.94121 1.21276 1.26017 1.03880 1.05021 0.93873 1.25701 0.96484 0.95155 1.01277 1.70030 1.33177 1.13546 1.39667 0.85741 0.78227 0.78549 0.80023 1.19367 1.20291 1.20217 1.22473 0.83891 0.81050 0.75190 1.90581 1.80783 1.24593 1.47168 1.84548 1.29039 1.45416 1.73417 0.93570 0.90053 0.92759 0.92753 0.90165 0.93094 0.86968 0.87076 0.98569 0.95576 0.92636 0.71911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.70 8.68 71.98 0.62 -3.08 15 2 C -0.09 -3.24 2.70 -52.15 -0.14 -3.38 15 3 C -0.11 -3.37 8.26 71.98 0.59 -2.78 15 4 C -0.14 -4.49 9.22 30.62 0.28 -4.21 15 5 C -0.14 -5.88 1.96 -52.93 -0.10 -5.99 15 6 C 0.08 3.92 4.29 29.85 0.13 4.05 15 7 C -0.52 -29.66 8.06 25.60 0.21 -29.45 15 8 H 0.04 2.51 7.67 -2.91 -0.02 2.49 15 9 C 0.01 0.71 5.46 84.65 0.46 1.17 15 10 N -0.92 -54.76 13.29 21.44 0.28 -54.47 15 11 Si 0.95 44.90 29.54 68.60 2.03 46.93 15 12 H -0.27 -12.32 7.11 99.48 0.71 -11.61 15 13 H -0.28 -12.65 7.11 99.48 0.71 -11.94 15 14 H -0.28 -12.97 7.11 99.48 0.71 -12.26 15 15 C 0.53 21.84 6.95 71.24 0.49 22.34 15 16 O -0.54 -23.68 15.02 21.96 0.33 -23.35 15 17 O -0.51 -17.79 13.42 -51.40 -0.69 -18.48 15 18 H 0.05 1.93 7.43 -2.38 -0.02 1.91 15 19 H 0.08 2.28 7.92 -2.39 -0.02 2.26 15 20 H 0.05 1.92 7.27 -2.39 -0.02 1.90 15 21 H 0.05 1.61 7.88 -2.39 -0.02 1.59 15 22 H 0.08 2.07 7.92 -2.39 -0.02 2.05 15 23 H 0.05 1.89 6.79 -2.39 -0.02 1.88 15 24 H 0.11 3.07 8.05 -2.38 -0.02 3.05 15 25 H 0.11 3.39 8.05 -2.39 -0.02 3.37 15 26 H 0.00 -0.22 8.14 -2.38 -0.02 -0.24 15 27 H 0.03 1.39 6.93 -2.39 -0.02 1.37 15 28 H 0.26 14.82 8.31 -92.71 -0.77 14.05 15 29 H 0.42 9.87 9.10 -74.06 -0.67 9.20 15 Total: -1.00 -66.62 249.63 4.97 -61.65 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: 0.47 Total: 9.06 kcal Atomic # 6 Polarization: -23.88 SS G_CDS: 2.55 Total: -21.33 kcal Atomic # 7 Polarization: -54.76 SS G_CDS: 0.28 Total: -54.47 kcal Atomic # 8 Polarization: -41.47 SS G_CDS: -0.36 Total: -41.83 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -66.62 4.97 -61.65 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642861105.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.405 kcal (2) G-P(sol) polarization free energy of solvation -66.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds