Wall clock time and date at job start Mon Mar 30 2020 02:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 110.33291 * 2 1 4 4 C 1.54475 * 110.46794 * 237.68802 * 2 1 3 5 5 C 1.54797 * 104.08889 * 217.15045 * 4 2 1 6 6 H 1.09002 * 110.60343 * 241.37350 * 5 4 2 7 7 C 1.50705 * 110.55153 * 118.57594 * 5 4 2 8 8 O 1.21431 * 119.99724 * 334.63921 * 7 5 4 9 9 C 1.41023 * 119.99877 * 154.64627 * 7 5 4 10 10 H 1.08000 * 120.00323 * 359.97438 * 9 7 5 11 11 C 1.40465 * 119.99682 * 179.97438 * 9 7 5 12 12 N 1.30516 * 120.00179 * 359.97438 * 11 9 7 13 13 Si 1.86801 * 119.99870 * 180.02562 * 11 9 7 14 14 H 1.48495 * 109.47140 * 359.97438 * 13 11 9 15 15 H 1.48496 * 109.47252 * 120.00010 * 13 11 9 16 16 H 1.48507 * 109.47070 * 240.00200 * 13 11 9 17 17 C 1.54476 * 103.92767 * 359.97438 * 5 4 2 18 18 H 1.09001 * 110.37439 * 265.11738 * 17 5 4 19 19 C 1.53002 * 110.37297 * 142.89107 * 17 5 4 20 20 O 1.44421 * 104.89947 * 24.00590 * 17 5 4 21 21 H 1.09000 * 109.47331 * 299.20431 * 1 2 3 22 22 H 1.09002 * 109.46897 * 59.20211 * 1 2 3 23 23 H 1.09000 * 109.46765 * 179.20292 * 1 2 3 24 24 H 1.09002 * 110.51474 * 335.78657 * 4 2 1 25 25 H 1.09000 * 110.51565 * 98.35933 * 4 2 1 26 26 H 0.96997 * 120.00533 * 179.97438 * 12 11 9 27 27 H 1.09001 * 109.46957 * 302.86766 * 19 17 5 28 28 H 1.08997 * 109.46799 * 62.86985 * 19 17 5 29 29 H 1.09004 * 109.46960 * 182.87142 * 19 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0701 -0.7736 -1.2231 5 6 3.3230 -1.5049 -0.6832 6 1 4.2172 -1.1762 -1.2129 7 6 3.1564 -2.9980 -0.8019 8 8 2.0442 -3.4851 -0.8210 9 6 4.2920 -3.8294 -0.8908 10 1 5.2811 -3.3961 -0.8741 11 6 4.1366 -5.2211 -1.0009 12 7 2.9412 -5.7447 -1.0205 13 14 5.6408 -6.3225 -1.1179 14 1 6.8691 -5.4892 -1.0734 15 1 5.6467 -7.2750 0.0213 16 1 5.6024 -7.0788 -2.3954 17 6 3.3884 -1.0837 0.8016 18 1 4.0522 -0.2279 0.9244 19 6 3.8631 -2.2530 1.6666 20 8 2.0330 -0.7221 1.1450 21 1 -0.3634 0.5014 0.8970 22 1 -0.3633 0.5262 -0.8828 23 1 -0.3633 -1.0276 -0.0143 24 1 1.3314 -1.4928 -1.5769 25 1 2.3428 -0.0835 -2.0216 26 1 2.8338 -6.7057 -1.0970 27 1 3.1966 -3.1038 1.5249 28 1 4.8758 -2.5324 1.3758 29 1 3.8551 -1.9559 2.7154 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686473649.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:04 Heat of formation + Delta-G solvation = -101.093570 kcal Electronic energy + Delta-G solvation = -13226.589470 eV Core-core repulsion = 10921.304571 eV Total energy + Delta-G solvation = -2305.284898 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.22318 -36.20308 -32.64203 -32.13939 -31.23796 -28.10239 -26.90243 -23.55413 -21.46992 -20.56487 -18.53023 -16.47813 -15.80596 -15.25894 -14.80724 -14.22384 -13.63091 -13.06294 -12.60617 -12.49870 -11.91250 -11.61597 -11.32909 -11.28364 -11.16960 -10.88262 -10.76533 -10.37108 -10.30316 -10.04787 -9.86385 -9.82320 -9.06641 -8.85249 -7.31859 -6.19665 -4.84897 3.04510 3.15213 3.19238 4.04729 4.22482 4.51450 5.27441 5.42618 5.49919 5.66362 5.72807 5.92456 5.96617 6.05838 6.17255 6.26114 6.36950 6.58550 6.60381 6.75528 6.80683 6.85057 7.03112 7.21129 7.29366 7.65221 8.11753 8.86754 8.94023 10.39052 10.63063 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.057549 B = 0.011133 C = 0.010354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.422231 B = 2514.435537 C = 2703.748263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.074 3.926 3 H 0.054 0.946 4 C -0.140 4.140 5 C -0.162 4.162 6 H 0.075 0.925 7 C 0.382 3.618 8 O -0.536 6.536 9 C -0.533 4.533 10 H 0.068 0.932 11 C 0.084 3.916 12 N -0.741 5.741 13 Si 0.900 3.100 14 H -0.261 1.261 15 H -0.274 1.274 16 H -0.275 1.275 17 C 0.093 3.907 18 H 0.053 0.947 19 C -0.140 4.140 20 O -0.370 6.370 21 H 0.054 0.946 22 H 0.062 0.938 23 H 0.068 0.932 24 H 0.090 0.910 25 H 0.058 0.942 26 H 0.271 0.729 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.702 6.923 1.068 7.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.016 3.984 3 H 0.072 0.928 4 C -0.178 4.178 5 C -0.182 4.182 6 H 0.093 0.907 7 C 0.275 3.725 8 O -0.424 6.424 9 C -0.565 4.565 10 H 0.086 0.914 11 C -0.139 4.139 12 N -0.370 5.370 13 Si 0.725 3.275 14 H -0.185 1.185 15 H -0.199 1.199 16 H -0.200 1.200 17 C 0.035 3.965 18 H 0.071 0.929 19 C -0.197 4.197 20 O -0.290 6.290 21 H 0.073 0.927 22 H 0.081 0.919 23 H 0.087 0.913 24 H 0.108 0.892 25 H 0.077 0.923 26 H 0.082 0.918 27 H 0.096 0.904 28 H 0.093 0.907 29 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 0.906 6.526 1.253 6.707 hybrid contribution 1.112 -0.338 -0.309 1.202 sum 2.017 6.188 0.944 6.576 Atomic orbital electron populations 1.21761 0.93990 1.03165 1.01092 1.22822 0.94824 0.94322 0.86440 0.92835 1.22985 0.98962 0.98941 0.96888 1.23252 0.97397 1.02303 0.95287 0.90658 1.19139 0.89950 0.85679 0.77711 1.90391 1.27892 1.75538 1.48595 1.20803 0.95040 0.91873 1.48772 0.91417 1.25986 0.96254 0.98987 0.92683 1.69958 1.22849 1.12351 1.31831 0.86424 0.82480 0.80178 0.78467 1.18488 1.19931 1.19996 1.22698 0.83558 0.96025 0.94219 0.92941 1.21829 1.02591 0.98028 0.97263 1.89084 1.27672 1.74502 1.37762 0.92739 0.91891 0.91272 0.89197 0.92333 0.91770 0.90387 0.90716 0.93933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 9.53 37.16 0.35 -1.99 15 2 C 0.07 1.37 3.91 -25.96 -0.10 1.27 15 3 H 0.05 0.87 8.14 -51.93 -0.42 0.45 15 4 C -0.14 -2.86 6.16 -25.01 -0.15 -3.02 15 5 C -0.16 -3.66 3.32 -90.05 -0.30 -3.96 15 6 H 0.08 1.56 8.13 -51.93 -0.42 1.14 15 7 C 0.38 10.52 4.16 -33.25 -0.14 10.39 15 8 O -0.54 -16.87 14.17 5.43 0.08 -16.79 15 9 C -0.53 -14.49 7.96 -37.69 -0.30 -14.79 15 10 H 0.07 1.71 7.85 -52.49 -0.41 1.29 15 11 C 0.08 2.25 5.50 -17.27 -0.10 2.15 15 12 N -0.74 -21.41 11.72 55.57 0.65 -20.76 15 13 Si 0.90 19.38 29.56 -169.99 -5.03 14.35 15 14 H -0.26 -5.44 7.11 56.52 0.40 -5.04 15 15 H -0.27 -5.79 7.11 56.52 0.40 -5.39 15 16 H -0.27 -5.81 7.11 56.52 0.40 -5.41 15 17 C 0.09 1.93 3.82 -25.96 -0.10 1.83 15 18 H 0.05 0.95 8.14 -51.93 -0.42 0.53 15 19 C -0.14 -2.96 8.40 37.16 0.31 -2.65 15 20 O -0.37 -8.08 11.04 -35.23 -0.39 -8.47 15 21 H 0.05 0.80 8.14 -51.93 -0.42 0.38 15 22 H 0.06 0.86 8.14 -51.93 -0.42 0.44 15 23 H 0.07 1.28 8.13 -51.93 -0.42 0.86 15 24 H 0.09 2.09 6.55 -51.93 -0.34 1.75 15 25 H 0.06 1.02 8.14 -51.93 -0.42 0.59 15 26 H 0.27 7.06 8.29 -40.82 -0.34 6.72 15 27 H 0.08 1.96 6.81 -51.93 -0.35 1.61 15 28 H 0.07 1.50 7.58 -51.93 -0.39 1.11 15 29 H 0.04 0.78 8.14 -51.93 -0.42 0.36 15 LS Contribution 242.79 15.07 3.66 3.66 Total: -1.00 -31.82 242.79 -5.56 -37.38 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -4.01 Total: 1.38 kcal Atomic # 6 Polarization: -10.24 SS G_CDS: -0.52 Total: -10.76 kcal Atomic # 7 Polarization: -21.41 SS G_CDS: 0.65 Total: -20.76 kcal Atomic # 8 Polarization: -24.95 SS G_CDS: -0.31 Total: -25.26 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.03 Total: 14.35 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -31.82 -5.56 -37.38 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686473649.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.710 kcal (2) G-P(sol) polarization free energy of solvation -31.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds