Wall clock time and date at job start Mon Mar 30 2020 02:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 110.33291 * 2 1 4 4 C 1.54475 * 110.46794 * 237.68802 * 2 1 3 5 5 C 1.54797 * 104.08889 * 217.15045 * 4 2 1 6 6 H 1.09002 * 110.60343 * 241.37350 * 5 4 2 7 7 C 1.50705 * 110.55153 * 118.57594 * 5 4 2 8 8 O 1.21431 * 119.99724 * 334.63921 * 7 5 4 9 9 C 1.41023 * 119.99877 * 154.64627 * 7 5 4 10 10 H 1.08000 * 120.00323 * 359.97438 * 9 7 5 11 11 C 1.40465 * 119.99682 * 179.97438 * 9 7 5 12 12 N 1.30516 * 120.00179 * 359.97438 * 11 9 7 13 13 Si 1.86801 * 119.99870 * 180.02562 * 11 9 7 14 14 H 1.48495 * 109.47140 * 359.97438 * 13 11 9 15 15 H 1.48496 * 109.47252 * 120.00010 * 13 11 9 16 16 H 1.48507 * 109.47070 * 240.00200 * 13 11 9 17 17 C 1.54476 * 103.92767 * 359.97438 * 5 4 2 18 18 H 1.09001 * 110.37439 * 265.11738 * 17 5 4 19 19 C 1.53002 * 110.37297 * 142.89107 * 17 5 4 20 20 O 1.44421 * 104.89947 * 24.00590 * 17 5 4 21 21 H 1.09000 * 109.47331 * 299.20431 * 1 2 3 22 22 H 1.09002 * 109.46897 * 59.20211 * 1 2 3 23 23 H 1.09000 * 109.46765 * 179.20292 * 1 2 3 24 24 H 1.09002 * 110.51474 * 335.78657 * 4 2 1 25 25 H 1.09000 * 110.51565 * 98.35933 * 4 2 1 26 26 H 0.96997 * 120.00533 * 179.97438 * 12 11 9 27 27 H 1.09001 * 109.46957 * 302.86766 * 19 17 5 28 28 H 1.08997 * 109.46799 * 62.86985 * 19 17 5 29 29 H 1.09004 * 109.46960 * 182.87142 * 19 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0701 -0.7736 -1.2231 5 6 3.3230 -1.5049 -0.6832 6 1 4.2172 -1.1762 -1.2129 7 6 3.1564 -2.9980 -0.8019 8 8 2.0442 -3.4851 -0.8210 9 6 4.2920 -3.8294 -0.8908 10 1 5.2811 -3.3961 -0.8741 11 6 4.1366 -5.2211 -1.0009 12 7 2.9412 -5.7447 -1.0205 13 14 5.6408 -6.3225 -1.1179 14 1 6.8691 -5.4892 -1.0734 15 1 5.6467 -7.2750 0.0213 16 1 5.6024 -7.0788 -2.3954 17 6 3.3884 -1.0837 0.8016 18 1 4.0522 -0.2279 0.9244 19 6 3.8631 -2.2530 1.6666 20 8 2.0330 -0.7221 1.1450 21 1 -0.3634 0.5014 0.8970 22 1 -0.3633 0.5262 -0.8828 23 1 -0.3633 -1.0276 -0.0143 24 1 1.3314 -1.4928 -1.5769 25 1 2.3428 -0.0835 -2.0216 26 1 2.8338 -6.7057 -1.0970 27 1 3.1966 -3.1038 1.5249 28 1 4.8758 -2.5324 1.3758 29 1 3.8551 -1.9559 2.7154 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686473649.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:04 Heat of formation + Delta-G solvation = -122.904427 kcal Electronic energy + Delta-G solvation = -13227.535259 eV Core-core repulsion = 10921.304571 eV Total energy + Delta-G solvation = -2306.230688 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.90490 -38.21374 -34.72757 -33.69318 -32.98534 -29.65654 -28.97652 -25.22927 -23.27720 -22.08801 -20.39369 -18.45976 -17.50679 -17.08943 -16.45706 -15.89037 -15.42140 -14.82745 -14.50027 -13.97687 -13.54764 -13.40378 -13.01936 -12.96964 -12.73736 -12.68868 -12.47624 -12.24139 -11.97184 -11.73903 -11.56551 -11.48996 -10.96275 -10.57720 -9.43005 -8.23826 -7.01436 1.34149 1.38380 1.55424 2.22324 2.22925 2.97001 3.40509 3.86609 3.92930 4.11484 4.19492 4.32956 4.46056 4.59624 4.63226 4.73106 4.86225 4.95823 5.02465 5.15588 5.17285 5.23980 5.25247 5.38482 5.47506 6.03086 6.10707 6.78326 6.89986 8.35665 8.59015 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.057549 B = 0.011133 C = 0.010354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.422231 B = 2514.435537 C = 2703.748263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.070 3.930 3 H 0.093 0.907 4 C -0.140 4.140 5 C -0.167 4.167 6 H 0.096 0.904 7 C 0.363 3.637 8 O -0.591 6.591 9 C -0.555 4.555 10 H 0.086 0.914 11 C 0.027 3.973 12 N -0.794 5.794 13 Si 0.987 3.013 14 H -0.244 1.244 15 H -0.268 1.268 16 H -0.268 1.268 17 C 0.092 3.908 18 H 0.095 0.905 19 C -0.134 4.134 20 O -0.398 6.398 21 H 0.071 0.929 22 H 0.092 0.908 23 H 0.033 0.967 24 H 0.050 0.950 25 H 0.092 0.908 26 H 0.278 0.722 27 H 0.025 0.975 28 H 0.082 0.918 29 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.677 8.460 1.128 9.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.013 3.987 3 H 0.111 0.889 4 C -0.178 4.178 5 C -0.187 4.187 6 H 0.114 0.886 7 C 0.261 3.739 8 O -0.483 6.483 9 C -0.586 4.586 10 H 0.104 0.896 11 C -0.191 4.191 12 N -0.423 5.423 13 Si 0.806 3.194 14 H -0.166 1.166 15 H -0.193 1.193 16 H -0.193 1.193 17 C 0.035 3.965 18 H 0.113 0.887 19 C -0.192 4.192 20 O -0.318 6.318 21 H 0.090 0.910 22 H 0.111 0.889 23 H 0.052 0.948 24 H 0.069 0.931 25 H 0.111 0.889 26 H 0.088 0.912 27 H 0.044 0.956 28 H 0.101 0.899 29 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.893 8.091 1.312 8.693 hybrid contribution 0.459 -0.796 -0.336 0.978 sum 3.353 7.296 0.976 8.088 Atomic orbital electron populations 1.21780 0.92920 1.01601 1.03437 1.23114 0.95898 0.95351 0.84313 0.88889 1.22982 0.97151 0.98790 0.98836 1.23183 0.99237 0.98842 0.97450 0.88601 1.19850 0.89252 0.88502 0.76312 1.90355 1.29659 1.77383 1.50914 1.21291 0.95796 0.92835 1.48713 0.89625 1.27189 0.99841 1.00759 0.91319 1.70112 1.26081 1.13202 1.32942 0.85131 0.77934 0.77680 0.78663 1.16638 1.19290 1.19271 1.22834 0.84108 0.97062 0.92474 0.88720 1.21752 1.01628 0.96565 0.99206 1.89060 1.28324 1.75266 1.39168 0.90973 0.88940 0.94792 0.93135 0.88916 0.91195 0.95578 0.89931 0.91459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.41 9.53 71.98 0.69 -3.73 15 2 C 0.07 2.46 3.91 31.09 0.12 2.58 15 3 H 0.09 2.58 8.14 -2.38 -0.02 2.56 15 4 C -0.14 -5.58 6.16 31.71 0.20 -5.38 15 5 C -0.17 -7.39 3.32 -10.42 -0.03 -7.43 15 6 H 0.10 3.76 8.13 -2.39 -0.02 3.74 15 7 C 0.36 20.56 4.16 26.37 0.11 20.67 15 8 O -0.59 -39.18 14.17 -3.50 -0.05 -39.23 15 9 C -0.56 -30.44 7.96 23.50 0.19 -30.25 15 10 H 0.09 4.23 7.85 -2.91 -0.02 4.20 15 11 C 0.03 1.48 5.50 85.43 0.47 1.95 15 12 N -0.79 -47.54 11.72 21.91 0.26 -47.28 15 13 Si 0.99 39.60 29.56 68.60 2.03 41.62 15 14 H -0.24 -9.00 7.11 99.48 0.71 -8.29 15 15 H -0.27 -10.42 7.11 99.48 0.71 -9.71 15 16 H -0.27 -10.38 7.11 99.48 0.71 -9.68 15 17 C 0.09 3.68 3.82 31.10 0.12 3.80 15 18 H 0.10 3.02 8.14 -2.39 -0.02 3.00 15 19 C -0.13 -5.61 8.40 71.98 0.60 -5.00 15 20 O -0.40 -16.84 11.04 -148.98 -1.64 -18.49 15 21 H 0.07 1.99 8.14 -2.39 -0.02 1.97 15 22 H 0.09 2.32 8.14 -2.39 -0.02 2.30 15 23 H 0.03 1.28 8.13 -2.39 -0.02 1.26 15 24 H 0.05 2.41 6.55 -2.39 -0.02 2.40 15 25 H 0.09 2.98 8.14 -2.39 -0.02 2.96 15 26 H 0.28 14.97 8.29 -92.71 -0.77 14.20 15 27 H 0.02 1.33 6.81 -2.39 -0.02 1.31 15 28 H 0.08 3.23 7.58 -2.39 -0.02 3.21 15 29 H 0.07 2.40 8.14 -2.39 -0.02 2.38 15 Total: -1.00 -72.54 242.79 4.17 -68.36 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: 1.12 Total: 17.80 kcal Atomic # 6 Polarization: -25.24 SS G_CDS: 2.46 Total: -22.79 kcal Atomic # 7 Polarization: -47.54 SS G_CDS: 0.26 Total: -47.28 kcal Atomic # 8 Polarization: -56.03 SS G_CDS: -1.69 Total: -57.72 kcal Atomic # 14 Polarization: 39.60 SS G_CDS: 2.03 Total: 41.62 kcal Total: -72.54 4.17 -68.36 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686473649.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.544 kcal (2) G-P(sol) polarization free energy of solvation -72.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds