Wall clock time and date at job start Mon Mar 30 2020 02:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 110.33066 * 2 1 4 4 C 1.54479 * 110.46363 * 237.68841 * 2 1 3 5 5 C 1.54690 * 104.07705 * 217.05198 * 4 2 1 6 6 H 1.09003 * 110.48851 * 118.72143 * 5 4 2 7 7 C 1.50703 * 110.60896 * 241.48923 * 5 4 2 8 8 O 1.21435 * 119.99718 * 89.60441 * 7 5 4 9 9 C 1.41024 * 119.99890 * 269.59566 * 7 5 4 10 10 H 1.08002 * 119.99763 * 0.02562 * 9 7 5 11 11 C 1.40458 * 119.99941 * 180.02562 * 9 7 5 12 12 N 1.30516 * 120.00130 * 0.02562 * 11 9 7 13 13 Si 1.86799 * 119.99781 * 180.02562 * 11 9 7 14 14 H 1.48494 * 109.47271 * 90.00128 * 13 11 9 15 15 H 1.48510 * 109.46989 * 210.00141 * 13 11 9 16 16 H 1.48498 * 109.47468 * 329.99979 * 13 11 9 17 17 C 1.54477 * 103.97624 * 0.13499 * 5 4 2 18 18 H 1.08996 * 110.37379 * 264.96189 * 17 5 4 19 19 C 1.53006 * 110.37024 * 142.74183 * 17 5 4 20 20 O 1.44418 * 110.36977 * 122.25226 * 2 1 3 21 21 H 1.09007 * 109.46929 * 299.20395 * 1 2 3 22 22 H 1.08994 * 109.47146 * 59.20043 * 1 2 3 23 23 H 1.09005 * 109.47167 * 179.20396 * 1 2 3 24 24 H 1.09000 * 110.51293 * 335.78386 * 4 2 1 25 25 H 1.08995 * 110.50835 * 98.36138 * 4 2 1 26 26 H 0.96995 * 120.00320 * 179.97438 * 12 11 9 27 27 H 1.09001 * 109.47002 * 301.54470 * 19 17 5 28 28 H 1.08993 * 109.46955 * 61.54907 * 19 17 5 29 29 H 1.09000 * 109.47050 * 181.54736 * 19 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0701 -0.7736 -1.2232 5 6 3.3236 -1.5023 -0.6840 6 1 3.2044 -2.5823 -0.7719 7 6 4.5590 -1.0447 -1.4157 8 8 5.1907 -0.0928 -1.0041 9 6 4.9815 -1.7220 -2.5783 10 1 4.4194 -2.5685 -2.9444 11 6 6.1333 -1.2958 -3.2599 12 7 6.8128 -0.2732 -2.8172 13 14 6.6925 -2.1926 -4.8002 14 1 6.0596 -1.5721 -5.9916 15 1 8.1698 -2.0985 -4.9190 16 1 6.2928 -3.6202 -4.7145 17 6 3.3882 -1.0840 0.8016 18 1 4.0523 -0.2288 0.9265 19 6 3.8620 -2.2553 1.6646 20 8 2.0327 -0.7225 1.1450 21 1 -0.3633 0.5015 0.8971 22 1 -0.3633 0.5262 -0.8827 23 1 -0.3634 -1.0276 -0.0143 24 1 1.3314 -1.4928 -1.5769 25 1 2.3427 -0.0835 -2.0216 26 1 7.6083 0.0209 -3.2877 27 1 3.1818 -3.0977 1.5388 28 1 4.8657 -2.5496 1.3581 29 1 3.8759 -1.9528 2.7117 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686473650.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:07 Heat of formation + Delta-G solvation = -106.136037 kcal Electronic energy + Delta-G solvation = -12983.212971 eV Core-core repulsion = 10677.709415 eV Total energy + Delta-G solvation = -2305.503556 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.18361 -36.31189 -32.73692 -32.14386 -31.34410 -28.49651 -26.78775 -23.68640 -21.29060 -20.66712 -18.87092 -16.55706 -15.69955 -15.13960 -14.73028 -14.55617 -13.52409 -13.06088 -12.67257 -12.55081 -12.15987 -11.74637 -11.62448 -11.54167 -11.41185 -11.09708 -10.83055 -10.53985 -10.37741 -10.09610 -9.86954 -9.81368 -9.03716 -8.94021 -7.38728 -6.25512 -4.92684 3.03102 3.12236 3.15804 4.01100 4.17648 4.44278 5.20414 5.27721 5.54309 5.60616 5.67559 5.83425 5.89386 6.08228 6.10639 6.15228 6.20499 6.39710 6.52645 6.64078 6.66336 6.74666 6.77640 7.01240 7.23848 7.58302 8.07588 8.80539 8.87594 10.32094 10.55150 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.049727 B = 0.010165 C = 0.009485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.940130 B = 2753.953678 C = 2951.283591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.071 3.929 3 H 0.063 0.937 4 C -0.127 4.127 5 C -0.156 4.156 6 H 0.076 0.924 7 C 0.373 3.627 8 O -0.543 6.543 9 C -0.532 4.532 10 H 0.068 0.932 11 C 0.083 3.917 12 N -0.740 5.740 13 Si 0.904 3.096 14 H -0.269 1.269 15 H -0.277 1.277 16 H -0.262 1.262 17 C 0.077 3.923 18 H 0.084 0.916 19 C -0.138 4.138 20 O -0.383 6.383 21 H 0.056 0.944 22 H 0.065 0.935 23 H 0.059 0.941 24 H 0.065 0.935 25 H 0.075 0.925 26 H 0.273 0.727 27 H 0.054 0.946 28 H 0.070 0.930 29 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.826 -2.300 1.628 7.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.013 3.987 3 H 0.081 0.919 4 C -0.165 4.165 5 C -0.176 4.176 6 H 0.095 0.905 7 C 0.267 3.733 8 O -0.432 6.432 9 C -0.564 4.564 10 H 0.087 0.913 11 C -0.140 4.140 12 N -0.368 5.368 13 Si 0.728 3.272 14 H -0.195 1.195 15 H -0.202 1.202 16 H -0.186 1.186 17 C 0.020 3.980 18 H 0.102 0.898 19 C -0.195 4.195 20 O -0.304 6.304 21 H 0.075 0.925 22 H 0.084 0.916 23 H 0.078 0.922 24 H 0.084 0.916 25 H 0.093 0.907 26 H 0.084 0.916 27 H 0.073 0.927 28 H 0.089 0.911 29 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.513 -1.764 2.056 7.054 hybrid contribution 0.298 -0.562 -1.080 1.253 sum -6.215 -2.326 0.976 6.707 Atomic orbital electron populations 1.21780 0.94102 1.02297 1.01708 1.22890 0.94104 0.95753 0.85943 0.91854 1.22790 0.96535 0.99299 0.97917 1.23125 0.98709 1.00532 0.95211 0.90540 1.19278 0.83251 0.85114 0.85651 1.90388 1.55719 1.28947 1.68177 1.20813 1.09636 1.15254 1.10683 0.91326 1.26020 0.95821 0.94058 0.98138 1.69946 1.12373 1.19405 1.35121 0.86416 0.78221 0.80806 0.81731 1.19451 1.20204 1.18578 1.22975 0.83483 0.97944 0.93562 0.89837 1.21729 1.01351 0.97298 0.99128 1.88977 1.28280 1.74682 1.38431 0.92454 0.91572 0.92171 0.91604 0.90667 0.91605 0.92665 0.91121 0.92848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 9.53 37.16 0.35 -1.66 15 2 C 0.07 1.30 3.92 -25.95 -0.10 1.20 15 3 H 0.06 1.20 8.14 -51.93 -0.42 0.78 15 4 C -0.13 -2.53 6.28 -25.07 -0.16 -2.69 15 5 C -0.16 -3.53 2.94 -90.11 -0.26 -3.79 15 6 H 0.08 1.65 7.86 -51.93 -0.41 1.24 15 7 C 0.37 10.30 5.89 -33.25 -0.20 10.11 15 8 O -0.54 -16.94 14.16 5.42 0.08 -16.86 15 9 C -0.53 -14.69 9.22 -37.69 -0.35 -15.03 15 10 H 0.07 1.76 7.85 -52.49 -0.41 1.35 15 11 C 0.08 2.23 5.50 -17.28 -0.10 2.14 15 12 N -0.74 -21.31 11.72 55.57 0.65 -20.66 15 13 Si 0.90 19.37 29.56 -169.99 -5.03 14.34 15 14 H -0.27 -5.64 7.11 56.52 0.40 -5.24 15 15 H -0.28 -5.78 7.11 56.52 0.40 -5.38 15 16 H -0.26 -5.46 7.11 56.52 0.40 -5.06 15 17 C 0.08 1.66 3.41 -25.95 -0.09 1.57 15 18 H 0.08 2.02 6.84 -51.93 -0.36 1.66 15 19 C -0.14 -2.53 9.52 37.16 0.35 -2.18 15 20 O -0.38 -7.80 11.04 -35.23 -0.39 -8.19 15 21 H 0.06 0.76 8.14 -51.92 -0.42 0.33 15 22 H 0.07 0.81 8.14 -51.93 -0.42 0.39 15 23 H 0.06 0.83 8.13 -51.93 -0.42 0.40 15 24 H 0.07 1.15 7.87 -51.93 -0.41 0.74 15 25 H 0.07 1.58 7.74 -51.93 -0.40 1.18 15 26 H 0.27 7.06 8.29 -40.82 -0.34 6.72 15 27 H 0.05 0.93 8.14 -51.93 -0.42 0.51 15 28 H 0.07 1.32 8.14 -51.93 -0.42 0.90 15 29 H 0.05 0.88 8.14 -51.93 -0.42 0.46 15 LS Contribution 247.42 15.07 3.73 3.73 Total: -1.00 -31.40 247.42 -5.58 -36.98 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: -4.08 Total: 0.99 kcal Atomic # 6 Polarization: -9.79 SS G_CDS: -0.54 Total: -10.33 kcal Atomic # 7 Polarization: -21.31 SS G_CDS: 0.65 Total: -20.66 kcal Atomic # 8 Polarization: -24.74 SS G_CDS: -0.31 Total: -25.05 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.03 Total: 14.34 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -31.40 -5.58 -36.98 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686473650.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.158 kcal (2) G-P(sol) polarization free energy of solvation -31.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds