Wall clock time and date at job start Mon Mar 30 2020 02:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 110.33066 * 2 1 4 4 C 1.54479 * 110.46363 * 237.68841 * 2 1 3 5 5 C 1.54690 * 104.07705 * 217.05198 * 4 2 1 6 6 H 1.09003 * 110.48851 * 118.72143 * 5 4 2 7 7 C 1.50703 * 110.60896 * 241.48923 * 5 4 2 8 8 O 1.21435 * 119.99718 * 89.60441 * 7 5 4 9 9 C 1.41024 * 119.99890 * 269.59566 * 7 5 4 10 10 H 1.08002 * 119.99763 * 0.02562 * 9 7 5 11 11 C 1.40458 * 119.99941 * 180.02562 * 9 7 5 12 12 N 1.30516 * 120.00130 * 0.02562 * 11 9 7 13 13 Si 1.86799 * 119.99781 * 180.02562 * 11 9 7 14 14 H 1.48494 * 109.47271 * 90.00128 * 13 11 9 15 15 H 1.48510 * 109.46989 * 210.00141 * 13 11 9 16 16 H 1.48498 * 109.47468 * 329.99979 * 13 11 9 17 17 C 1.54477 * 103.97624 * 0.13499 * 5 4 2 18 18 H 1.08996 * 110.37379 * 264.96189 * 17 5 4 19 19 C 1.53006 * 110.37024 * 142.74183 * 17 5 4 20 20 O 1.44418 * 110.36977 * 122.25226 * 2 1 3 21 21 H 1.09007 * 109.46929 * 299.20395 * 1 2 3 22 22 H 1.08994 * 109.47146 * 59.20043 * 1 2 3 23 23 H 1.09005 * 109.47167 * 179.20396 * 1 2 3 24 24 H 1.09000 * 110.51293 * 335.78386 * 4 2 1 25 25 H 1.08995 * 110.50835 * 98.36138 * 4 2 1 26 26 H 0.96995 * 120.00320 * 179.97438 * 12 11 9 27 27 H 1.09001 * 109.47002 * 301.54470 * 19 17 5 28 28 H 1.08993 * 109.46955 * 61.54907 * 19 17 5 29 29 H 1.09000 * 109.47050 * 181.54736 * 19 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0701 -0.7736 -1.2232 5 6 3.3236 -1.5023 -0.6840 6 1 3.2044 -2.5823 -0.7719 7 6 4.5590 -1.0447 -1.4157 8 8 5.1907 -0.0928 -1.0041 9 6 4.9815 -1.7220 -2.5783 10 1 4.4194 -2.5685 -2.9444 11 6 6.1333 -1.2958 -3.2599 12 7 6.8128 -0.2732 -2.8172 13 14 6.6925 -2.1926 -4.8002 14 1 6.0596 -1.5721 -5.9916 15 1 8.1698 -2.0985 -4.9190 16 1 6.2928 -3.6202 -4.7145 17 6 3.3882 -1.0840 0.8016 18 1 4.0523 -0.2288 0.9265 19 6 3.8620 -2.2553 1.6646 20 8 2.0327 -0.7225 1.1450 21 1 -0.3633 0.5015 0.8971 22 1 -0.3633 0.5262 -0.8827 23 1 -0.3634 -1.0276 -0.0143 24 1 1.3314 -1.4928 -1.5769 25 1 2.3427 -0.0835 -2.0216 26 1 7.6083 0.0209 -3.2877 27 1 3.1818 -3.0977 1.5388 28 1 4.8657 -2.5496 1.3581 29 1 3.8759 -1.9528 2.7117 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686473650.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:06 Heat of formation + Delta-G solvation = -127.036607 kcal Electronic energy + Delta-G solvation = -12984.119288 eV Core-core repulsion = 10677.709415 eV Total energy + Delta-G solvation = -2306.409873 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.88420 -38.35891 -34.81227 -33.61927 -33.12230 -30.05396 -28.75070 -25.31251 -23.10531 -22.17872 -20.74955 -18.57154 -17.64040 -16.73145 -16.50500 -16.13705 -15.29138 -14.78569 -14.38287 -14.22997 -13.76073 -13.46130 -13.26576 -13.00410 -12.79810 -12.77954 -12.57801 -12.31321 -12.05775 -11.90336 -11.55354 -11.45608 -10.98345 -10.69827 -9.51925 -8.30894 -7.12076 1.33831 1.37161 1.53601 2.15513 2.20164 2.89687 3.29617 3.77717 3.93849 4.05926 4.09268 4.32202 4.42483 4.53392 4.58988 4.71443 4.78144 4.94035 4.99202 5.09864 5.12709 5.18217 5.18532 5.28217 5.30437 5.95838 5.96602 6.70671 6.79254 8.25485 8.49389 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.049727 B = 0.010165 C = 0.009485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.940130 B = 2753.953678 C = 2951.283591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.065 3.935 3 H 0.048 0.952 4 C -0.124 4.124 5 C -0.156 4.156 6 H 0.089 0.911 7 C 0.353 3.647 8 O -0.593 6.593 9 C -0.560 4.560 10 H 0.085 0.915 11 C 0.027 3.973 12 N -0.790 5.790 13 Si 0.992 3.008 14 H -0.258 1.258 15 H -0.269 1.269 16 H -0.248 1.248 17 C 0.078 3.922 18 H 0.046 0.954 19 C -0.132 4.132 20 O -0.383 6.383 21 H 0.068 0.932 22 H 0.087 0.913 23 H 0.070 0.930 24 H 0.096 0.904 25 H 0.055 0.945 26 H 0.281 0.719 27 H 0.075 0.925 28 H 0.060 0.940 29 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.150 -3.888 0.732 9.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.007 3.993 3 H 0.066 0.934 4 C -0.162 4.162 5 C -0.175 4.175 6 H 0.108 0.892 7 C 0.251 3.749 8 O -0.486 6.486 9 C -0.591 4.591 10 H 0.103 0.897 11 C -0.192 4.192 12 N -0.419 5.419 13 Si 0.811 3.189 14 H -0.183 1.183 15 H -0.193 1.193 16 H -0.171 1.171 17 C 0.021 3.979 18 H 0.063 0.937 19 C -0.189 4.189 20 O -0.303 6.303 21 H 0.087 0.913 22 H 0.106 0.894 23 H 0.089 0.911 24 H 0.115 0.885 25 H 0.073 0.927 26 H 0.092 0.908 27 H 0.094 0.906 28 H 0.079 0.921 29 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.866 -3.363 1.170 8.634 hybrid contribution 0.708 -0.016 -0.779 1.053 sum -7.157 -3.379 0.390 7.925 Atomic orbital electron populations 1.21761 0.90217 1.03549 1.03396 1.23083 0.97045 0.94491 0.84634 0.93428 1.22804 0.95962 0.99475 0.97930 1.23000 0.97609 1.01345 0.95576 0.89221 1.19960 0.84430 0.84391 0.86128 1.90352 1.57730 1.30981 1.69537 1.21337 1.10621 1.15925 1.11246 0.89690 1.27240 0.95376 0.94584 1.01988 1.70082 1.13167 1.21333 1.37273 0.85098 0.77921 0.79629 0.76270 1.18286 1.19341 1.17118 1.22831 0.83700 0.97702 0.93701 0.93652 1.21684 1.01077 0.96650 0.99476 1.88974 1.27267 1.74778 1.39280 0.91287 0.89437 0.91094 0.88538 0.92658 0.90830 0.90619 0.92116 0.91091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.37 9.53 71.98 0.69 -2.68 15 2 C 0.07 2.33 3.92 31.10 0.12 2.45 15 3 H 0.05 1.83 8.14 -2.39 -0.02 1.81 15 4 C -0.12 -4.81 6.28 31.67 0.20 -4.61 15 5 C -0.16 -7.05 2.94 -10.46 -0.03 -7.08 15 6 H 0.09 3.77 7.86 -2.39 -0.02 3.75 15 7 C 0.35 20.08 5.89 26.37 0.16 20.24 15 8 O -0.59 -38.83 14.16 -3.51 -0.05 -38.88 15 9 C -0.56 -31.18 9.22 23.49 0.22 -30.96 15 10 H 0.08 4.29 7.85 -2.91 -0.02 4.27 15 11 C 0.03 1.47 5.50 85.43 0.47 1.94 15 12 N -0.79 -46.64 11.72 21.91 0.26 -46.38 15 13 Si 0.99 39.21 29.56 68.60 2.03 41.24 15 14 H -0.26 -9.71 7.11 99.48 0.71 -9.00 15 15 H -0.27 -10.18 7.11 99.48 0.71 -9.47 15 16 H -0.25 -9.17 7.11 99.48 0.71 -8.47 15 17 C 0.08 3.39 3.41 31.10 0.11 3.49 15 18 H 0.05 2.31 6.84 -2.39 -0.02 2.30 15 19 C -0.13 -4.73 9.52 71.98 0.69 -4.05 15 20 O -0.38 -15.17 11.04 -148.98 -1.64 -16.81 15 21 H 0.07 1.61 8.14 -2.38 -0.02 1.59 15 22 H 0.09 1.86 8.14 -2.39 -0.02 1.84 15 23 H 0.07 1.68 8.13 -2.38 -0.02 1.66 15 24 H 0.10 3.12 7.87 -2.39 -0.02 3.10 15 25 H 0.05 2.34 7.74 -2.39 -0.02 2.32 15 26 H 0.28 14.86 8.29 -92.71 -0.77 14.10 15 27 H 0.07 2.39 8.14 -2.39 -0.02 2.37 15 28 H 0.06 2.27 8.14 -2.39 -0.02 2.25 15 29 H 0.07 2.26 8.14 -2.39 -0.02 2.24 15 Total: -1.00 -69.76 247.42 4.32 -65.44 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: 1.12 Total: 16.66 kcal Atomic # 6 Polarization: -23.87 SS G_CDS: 2.61 Total: -21.26 kcal Atomic # 7 Polarization: -46.64 SS G_CDS: 0.26 Total: -46.38 kcal Atomic # 8 Polarization: -54.00 SS G_CDS: -1.69 Total: -55.69 kcal Atomic # 14 Polarization: 39.21 SS G_CDS: 2.03 Total: 41.24 kcal Total: -69.76 4.32 -65.44 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686473650.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.597 kcal (2) G-P(sol) polarization free energy of solvation -69.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds