Wall clock time and date at job start Mon Mar 30 2020 02:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30685 * 1 3 3 Si 1.86800 * 119.99961 * 2 1 4 4 H 1.48503 * 109.46845 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47399 * 119.99881 * 3 2 1 6 6 H 1.48498 * 109.47295 * 240.00487 * 3 2 1 7 7 C 1.40306 * 120.00224 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00277 * 180.02562 * 7 2 1 9 9 C 1.40065 * 120.00410 * 359.97438 * 7 2 1 10 10 C 1.35037 * 120.00717 * 180.02562 * 9 7 2 11 11 C 1.50696 * 120.00088 * 179.97438 * 10 9 7 12 12 C 1.52581 * 109.22615 * 240.59250 * 11 10 9 13 13 C 1.53116 * 109.94631 * 168.96425 * 12 11 10 14 14 S 1.81748 * 108.80792 * 63.08748 * 13 12 11 15 15 C 1.81753 * 102.22213 * 306.71415 * 14 13 12 16 16 C 1.52582 * 109.22599 * 119.39985 * 11 10 9 17 17 H 0.97000 * 119.99429 * 179.97438 * 1 2 3 18 18 H 1.08004 * 120.00035 * 359.97438 * 9 7 2 19 19 H 1.08004 * 119.99247 * 359.97438 * 10 9 7 20 20 H 1.08994 * 109.22485 * 359.97438 * 11 10 9 21 21 H 1.09000 * 109.38920 * 289.15874 * 12 11 10 22 22 H 1.09000 * 109.38577 * 48.85608 * 12 11 10 23 23 H 1.09002 * 109.61030 * 303.27985 * 13 12 11 24 24 H 1.08994 * 109.67868 * 182.93967 * 13 12 11 25 25 H 1.09001 * 109.57461 * 293.45718 * 15 14 13 26 26 H 1.08996 * 109.68148 * 173.13441 * 15 14 13 27 27 H 1.09006 * 109.39261 * 311.14532 * 16 11 10 28 28 H 1.09002 * 109.39035 * 70.84015 * 16 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 1.2758 2.7464 0.0006 5 1 3.0946 1.6965 1.2125 6 1 3.0945 1.6965 -1.2125 7 6 2.0084 -1.2151 -0.0005 8 1 3.0885 -1.2151 -0.0001 9 6 1.3082 -2.4281 -0.0005 10 6 1.9834 -3.5976 -0.0005 11 6 1.2299 -4.9027 0.0000 12 6 1.5918 -5.6912 1.2551 13 6 0.6430 -6.8822 1.4155 14 16 0.8642 -8.0021 0.0012 15 6 0.6427 -6.8833 -1.4139 16 6 1.5907 -5.6917 -1.2551 17 1 -0.4849 -0.8401 -0.0004 18 1 0.2282 -2.4283 0.0003 19 1 3.0635 -3.5975 -0.0010 20 1 0.1592 -4.6989 0.0009 21 1 2.6168 -6.0527 1.1724 22 1 1.5078 -5.0423 2.1269 23 1 -0.3875 -6.5279 1.4431 24 1 0.8719 -7.4120 2.3401 25 1 -0.3878 -6.5289 -1.4415 26 1 0.8721 -7.4117 -2.3391 27 1 1.5060 -5.0432 -2.1271 28 1 2.6158 -6.0532 -1.1731 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687678654.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:32 Heat of formation + Delta-G solvation = -28.148810 kcal Electronic energy + Delta-G solvation = -10437.724618 eV Core-core repulsion = 8578.355712 eV Total energy + Delta-G solvation = -1859.368905 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 198.077 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -36.90473 -34.35990 -31.10850 -30.72272 -26.95480 -23.82343 -22.54278 -20.34410 -18.94360 -16.96627 -16.38028 -14.64635 -14.23086 -14.10185 -13.38418 -13.25198 -13.07605 -12.55837 -12.33623 -11.89941 -11.20819 -11.03761 -10.61772 -10.47430 -10.20033 -9.95636 -9.78887 -9.48814 -9.44580 -9.00664 -7.79454 -7.46031 -7.14822 -4.33539 2.06888 2.78951 3.08159 3.17868 3.37810 3.85477 4.06709 5.13079 5.21261 5.29035 5.40352 5.40947 5.70813 5.74974 5.89404 6.08590 6.24069 6.43893 6.45297 6.67871 6.91757 6.92736 7.18140 7.72272 7.84784 8.18552 8.50283 8.97627 9.15062 10.18032 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.083429 B = 0.006826 C = 0.006745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 335.532960 B = 4101.051451 C = 4150.500235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.027 3.973 3 Si 1.077 2.923 4 H -0.275 1.275 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.066 0.934 9 C 0.032 3.968 10 C -0.415 4.415 11 C -0.016 4.016 12 C -0.110 4.110 13 C -0.074 4.074 14 S -0.297 6.297 15 C -0.074 4.074 16 C -0.110 4.110 17 H 0.285 0.715 18 H 0.060 0.940 19 H 0.075 0.925 20 H 0.045 0.955 21 H 0.065 0.935 22 H 0.070 0.930 23 H 0.077 0.923 24 H 0.094 0.906 25 H 0.077 0.923 26 H 0.094 0.906 27 H 0.070 0.930 28 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.573 -7.826 0.001 7.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.190 4.190 3 Si 0.901 3.099 4 H -0.200 1.200 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.552 4.552 8 H 0.084 0.916 9 C 0.011 3.989 10 C -0.437 4.437 11 C -0.034 4.034 12 C -0.149 4.149 13 C -0.222 4.222 14 S -0.072 6.072 15 C -0.222 4.222 16 C -0.149 4.149 17 H 0.098 0.902 18 H 0.078 0.922 19 H 0.093 0.907 20 H 0.064 0.936 21 H 0.083 0.917 22 H 0.089 0.911 23 H 0.096 0.904 24 H 0.113 0.887 25 H 0.096 0.904 26 H 0.113 0.887 27 H 0.089 0.911 28 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.510 -7.259 0.002 7.277 hybrid contribution -0.158 -0.526 -0.001 0.550 sum 0.352 -7.786 0.002 7.794 Atomic orbital electron populations 1.70513 1.07966 1.32750 1.34615 1.27212 0.96020 1.04821 0.90966 0.83454 0.75237 0.73455 0.77789 1.19998 1.20222 1.20215 1.20467 0.96185 0.92374 1.46197 0.91618 1.19832 0.95210 0.93196 0.90643 1.21664 0.96243 0.90683 1.35077 1.19504 0.98098 0.94714 0.91128 1.21847 0.98225 0.94515 1.00311 1.23515 1.03189 0.98622 0.96893 1.86466 1.95497 1.20949 1.04289 1.23509 1.03188 0.98634 0.96899 1.21845 0.98236 0.94511 1.00313 0.90179 0.92154 0.90655 0.93635 0.91656 0.91145 0.90396 0.88729 0.90402 0.88726 0.91141 0.91664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -22.90 13.59 55.57 0.76 -22.15 15 2 C 0.03 0.72 5.50 -17.26 -0.09 0.62 15 3 Si 1.08 22.47 29.94 -169.99 -5.09 17.39 15 4 H -0.28 -5.66 7.11 56.52 0.40 -5.26 15 5 H -0.28 -5.52 7.11 56.52 0.40 -5.11 15 6 H -0.28 -5.51 7.11 56.52 0.40 -5.11 15 7 C -0.52 -14.45 9.05 -38.12 -0.35 -14.80 15 8 H 0.07 1.81 7.85 -52.48 -0.41 1.39 15 9 C 0.03 0.85 8.95 -40.03 -0.36 0.49 15 10 C -0.41 -10.09 8.42 -35.45 -0.30 -10.39 15 11 C -0.02 -0.32 2.23 -92.20 -0.21 -0.52 15 12 C -0.11 -1.94 5.03 -26.89 -0.14 -2.08 15 13 C -0.07 -1.12 6.46 37.22 0.24 -0.88 15 14 S -0.30 -4.63 22.33 -107.50 -2.40 -7.03 15 15 C -0.07 -1.12 6.46 37.21 0.24 -0.88 15 16 C -0.11 -1.94 5.03 -26.90 -0.14 -2.08 15 17 H 0.29 7.82 6.54 -40.82 -0.27 7.55 15 18 H 0.06 1.62 6.06 -52.48 -0.32 1.31 15 19 H 0.08 1.92 8.05 -52.48 -0.42 1.50 15 20 H 0.05 0.94 7.76 -51.93 -0.40 0.54 15 21 H 0.06 1.15 8.05 -51.93 -0.42 0.74 15 22 H 0.07 1.28 8.08 -51.93 -0.42 0.86 15 23 H 0.08 1.15 8.14 -51.93 -0.42 0.73 15 24 H 0.09 1.26 8.14 -51.93 -0.42 0.84 15 25 H 0.08 1.15 8.14 -51.93 -0.42 0.73 15 26 H 0.09 1.26 8.14 -51.93 -0.42 0.84 15 27 H 0.07 1.28 8.09 -51.93 -0.42 0.86 15 28 H 0.06 1.15 8.05 -51.93 -0.42 0.73 15 LS Contribution 245.42 15.07 3.70 3.70 Total: -1.00 -27.36 245.42 -8.11 -35.48 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -3.98 Total: 3.13 kcal Atomic # 6 Polarization: -29.42 SS G_CDS: -1.09 Total: -30.51 kcal Atomic # 7 Polarization: -22.90 SS G_CDS: 0.76 Total: -22.15 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.09 Total: 17.39 kcal Atomic # 16 Polarization: -4.63 SS G_CDS: -2.40 Total: -7.03 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -27.36 -8.11 -35.48 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687678654.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.326 kcal (2) G-P(sol) polarization free energy of solvation -27.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds