Wall clock time and date at job start Mon Mar 30 2020 02:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30684 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00051 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00002 * 3 2 1 6 6 H 1.48503 * 109.47284 * 149.99698 * 3 2 1 7 7 C 1.40306 * 120.00125 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99744 * 180.02562 * 7 2 1 9 9 C 1.40069 * 120.00249 * 359.97438 * 7 2 1 10 10 C 1.35032 * 120.00314 * 180.02562 * 9 7 2 11 11 C 1.50702 * 119.99966 * 180.27961 * 10 9 7 12 12 C 1.52996 * 109.47175 * 124.72352 * 11 10 9 13 13 H 1.09004 * 109.59763 * 305.32148 * 12 11 10 14 14 C 1.52935 * 109.60471 * 185.00221 * 12 11 10 15 15 C 1.53710 * 112.48971 * 209.97105 * 14 12 11 16 16 S 1.83384 * 104.97092 * 2.81805 * 15 14 12 17 17 C 1.55153 * 109.60613 * 65.46084 * 12 11 10 18 18 H 0.97005 * 120.00035 * 359.97438 * 1 2 3 19 19 H 1.08001 * 119.99476 * 0.02562 * 9 7 2 20 20 H 1.08002 * 119.99674 * 359.97438 * 10 9 7 21 21 H 1.09002 * 109.47005 * 244.72417 * 11 10 9 22 22 H 1.08999 * 109.47073 * 4.72115 * 11 10 9 23 23 H 1.09004 * 108.88671 * 330.75908 * 14 12 11 24 24 H 1.08995 * 108.89130 * 89.16941 * 14 12 11 25 25 H 1.08997 * 110.34252 * 121.69833 * 15 14 12 26 26 H 1.09006 * 110.33863 * 243.84145 * 15 14 12 27 27 H 1.09007 * 111.13127 * 279.28073 * 17 12 11 28 28 H 1.08998 * 111.13021 * 43.45878 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 2.4883 2.0465 -1.4001 5 1 1.4383 2.6527 0.7000 6 1 3.5384 1.4403 0.7001 7 6 2.0084 -1.2151 -0.0005 8 1 3.0884 -1.2150 -0.0001 9 6 1.3081 -2.4282 -0.0005 10 6 1.9833 -3.5976 -0.0005 11 6 1.2298 -4.9027 -0.0069 12 6 1.6914 -5.7523 -1.1926 13 1 1.5855 -5.1810 -2.1149 14 6 0.8429 -7.0220 -1.2753 15 6 1.6158 -8.2076 -1.8748 16 16 3.3115 -7.5712 -2.1621 17 6 3.1783 -6.1512 -0.9997 18 1 -0.4850 0.8401 0.0004 19 1 0.2281 -2.4281 -0.0005 20 1 3.0633 -3.5975 -0.0010 21 1 1.4242 -5.4390 0.9219 22 1 0.1616 -4.7050 -0.0955 23 1 0.5091 -7.2892 -0.2726 24 1 -0.0321 -6.8221 -1.8937 25 1 1.6376 -9.0402 -1.1717 26 1 1.1618 -8.5190 -2.8157 27 1 3.8442 -5.3395 -1.2929 28 1 3.3712 -6.4640 0.0264 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687678657.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:29 Heat of formation + Delta-G solvation = -36.061140 kcal Electronic energy + Delta-G solvation = -10234.713573 eV Core-core repulsion = 8375.001563 eV Total energy + Delta-G solvation = -1859.712010 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 198.077 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.21117 -36.09010 -33.62180 -31.02402 -28.68513 -26.35893 -24.17483 -21.02213 -20.16415 -19.00596 -17.43933 -16.75220 -16.56293 -15.14630 -15.08397 -14.64615 -14.33304 -13.86867 -13.13109 -13.03702 -12.98041 -12.88815 -12.56275 -12.20451 -11.86971 -11.55808 -11.52637 -11.37430 -11.22304 -10.78623 -9.66764 -8.73250 -8.69718 -6.31007 0.95190 1.24468 1.35895 1.41583 1.50081 1.96830 2.20877 3.36576 3.66346 3.86968 4.08184 4.16746 4.30706 4.60863 4.70593 4.73742 4.79301 4.89301 5.04352 5.12324 5.20507 5.28636 5.43152 5.49692 5.97061 6.37343 6.63487 7.03739 7.22450 8.36269 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.074037 B = 0.006413 C = 0.006080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 378.096901 B = 4365.295524 C = 4603.898033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.027 3.973 3 Si 0.987 3.013 4 H -0.261 1.261 5 H -0.264 1.264 6 H -0.260 1.260 7 C -0.502 4.502 8 H 0.062 0.938 9 C 0.022 3.978 10 C -0.407 4.407 11 C -0.024 4.024 12 C -0.080 4.080 13 H 0.060 0.940 14 C -0.124 4.124 15 C -0.049 4.049 16 S -0.363 6.363 17 C -0.037 4.037 18 H 0.290 0.710 19 H 0.059 0.941 20 H 0.067 0.933 21 H 0.049 0.951 22 H 0.041 0.959 23 H 0.083 0.917 24 H 0.085 0.915 25 H 0.105 0.895 26 H 0.110 0.890 27 H 0.090 0.910 28 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.901 -9.461 -1.763 9.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C -0.186 4.186 3 Si 0.807 3.193 4 H -0.186 1.186 5 H -0.188 1.188 6 H -0.184 1.184 7 C -0.533 4.533 8 H 0.080 0.920 9 C 0.002 3.998 10 C -0.429 4.429 11 C -0.063 4.063 12 C -0.101 4.101 13 H 0.079 0.921 14 C -0.163 4.163 15 C -0.197 4.197 16 S -0.136 6.136 17 C -0.185 4.185 18 H 0.100 0.900 19 H 0.077 0.923 20 H 0.085 0.915 21 H 0.067 0.933 22 H 0.060 0.940 23 H 0.101 0.899 24 H 0.103 0.897 25 H 0.124 0.876 26 H 0.129 0.871 27 H 0.108 0.892 28 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.586 -9.733 -2.490 10.171 hybrid contribution -0.571 1.282 0.682 1.560 sum 1.014 -8.451 -1.808 8.702 Atomic orbital electron populations 1.69610 1.09103 1.30978 1.38786 1.26996 0.95695 1.05153 0.90725 0.85141 0.78877 0.75679 0.79599 1.18552 1.18784 1.18421 1.19801 0.94489 0.92300 1.46677 0.91960 1.20001 0.95715 0.93352 0.90745 1.22250 0.96179 0.93003 1.31419 1.19983 0.97262 0.93633 0.95398 1.22009 0.92161 0.96282 0.99631 0.92145 1.22042 0.99248 0.92086 1.02919 1.23980 0.90207 1.00186 1.05332 1.87740 1.25374 1.38963 1.61562 1.24310 0.99621 0.95228 0.99297 0.89971 0.92286 0.91519 0.93289 0.94040 0.89872 0.89678 0.87603 0.87126 0.89165 0.88862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -46.68 12.86 21.89 0.28 -46.40 15 2 C 0.03 1.42 5.50 85.37 0.47 1.89 15 3 Si 0.99 39.77 29.56 68.60 2.03 41.80 15 4 H -0.26 -10.10 7.11 99.48 0.71 -9.40 15 5 H -0.26 -9.93 7.11 99.48 0.71 -9.22 15 6 H -0.26 -10.31 7.11 99.48 0.71 -9.60 15 7 C -0.50 -28.52 9.05 23.22 0.21 -28.31 15 8 H 0.06 3.48 7.85 -2.91 -0.02 3.46 15 9 C 0.02 1.22 9.00 21.98 0.20 1.42 15 10 C -0.41 -19.95 8.87 24.95 0.22 -19.73 15 11 C -0.02 -0.94 4.94 29.85 0.15 -0.79 15 12 C -0.08 -2.65 2.54 -10.08 -0.03 -2.67 15 13 H 0.06 2.24 8.14 -2.38 -0.02 2.22 15 14 C -0.12 -3.10 5.86 30.81 0.18 -2.92 15 15 C -0.05 -1.10 7.38 72.22 0.53 -0.56 15 16 S -0.36 -10.75 23.23 -56.49 -1.31 -12.06 15 17 C -0.04 -1.18 6.23 72.72 0.45 -0.72 15 18 H 0.29 14.16 8.29 -92.70 -0.77 13.39 15 19 H 0.06 3.47 7.27 -2.91 -0.02 3.45 15 20 H 0.07 3.34 7.57 -2.91 -0.02 3.31 15 21 H 0.05 1.76 8.12 -2.39 -0.02 1.74 15 22 H 0.04 1.64 7.84 -2.39 -0.02 1.62 15 23 H 0.08 1.89 7.80 -2.39 -0.02 1.87 15 24 H 0.08 1.96 8.14 -2.39 -0.02 1.94 15 25 H 0.11 1.95 8.14 -2.39 -0.02 1.93 15 26 H 0.11 2.09 8.14 -2.38 -0.02 2.07 15 27 H 0.09 3.13 7.88 -2.38 -0.02 3.12 15 28 H 0.09 2.81 8.09 -2.39 -0.02 2.79 15 Total: -1.00 -58.86 249.63 4.50 -54.36 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: 1.11 Total: 14.70 kcal Atomic # 6 Polarization: -54.78 SS G_CDS: 2.39 Total: -52.40 kcal Atomic # 7 Polarization: -46.68 SS G_CDS: 0.28 Total: -46.40 kcal Atomic # 14 Polarization: 39.77 SS G_CDS: 2.03 Total: 41.80 kcal Atomic # 16 Polarization: -10.75 SS G_CDS: -1.31 Total: -12.06 kcal Total: -58.86 4.50 -54.36 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687678657.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.297 kcal (2) G-P(sol) polarization free energy of solvation -58.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds