Wall clock time and date at job start Mon Mar 30 2020 02:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30691 * 1 3 3 Si 1.86803 * 119.99946 * 2 1 4 4 H 1.48498 * 109.46867 * 90.00524 * 3 2 1 5 5 H 1.48501 * 109.47216 * 210.00381 * 3 2 1 6 6 H 1.48499 * 109.47135 * 330.00723 * 3 2 1 7 7 C 1.40305 * 120.00137 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00311 * 0.02562 * 7 2 1 9 9 C 1.40072 * 120.00107 * 179.97438 * 7 2 1 10 10 C 1.35034 * 120.00049 * 179.97438 * 9 7 2 11 11 C 1.50700 * 120.00106 * 180.02562 * 10 9 7 12 12 H 1.09005 * 109.57532 * 245.25830 * 11 10 9 13 13 C 1.53101 * 109.57341 * 125.00307 * 11 10 9 14 14 C 1.52582 * 109.95217 * 177.16926 * 13 11 10 15 15 C 1.52586 * 110.72787 * 70.67594 * 14 13 11 16 16 C 1.53100 * 109.95097 * 289.32112 * 15 14 13 17 17 S 1.81744 * 109.57560 * 5.64570 * 11 10 9 18 18 H 0.97001 * 119.99753 * 359.97438 * 1 2 3 19 19 H 1.07999 * 120.00045 * 0.02562 * 9 7 2 20 20 H 1.07999 * 119.99906 * 0.02562 * 10 9 7 21 21 H 1.08996 * 109.38929 * 297.31357 * 13 11 10 22 22 H 1.08996 * 109.39094 * 57.12142 * 13 11 10 23 23 H 1.09001 * 109.22457 * 190.99500 * 14 13 11 24 24 H 1.08997 * 109.23150 * 310.39370 * 14 13 11 25 25 H 1.08995 * 109.39097 * 49.46785 * 15 14 13 26 26 H 1.08999 * 109.39079 * 169.17366 * 15 14 13 27 27 H 1.09006 * 109.57375 * 182.83053 * 16 15 14 28 28 H 1.08995 * 109.57564 * 303.21495 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6178 0.0000 4 1 2.4885 2.0463 1.4001 5 1 3.5384 1.4403 -0.7001 6 1 1.4383 2.6527 -0.6999 7 6 2.0085 -1.2151 -0.0005 8 1 1.4685 -2.1504 -0.0014 9 6 3.4092 -1.2151 -0.0011 10 6 4.0844 -2.3845 -0.0011 11 6 5.5914 -2.3845 -0.0011 12 1 5.9566 -2.8143 -0.9339 13 6 6.1043 -3.2120 1.1805 14 6 7.6284 -3.2761 1.1486 15 6 8.2335 -1.9199 1.4993 16 6 7.9906 -0.9287 0.3581 17 16 6.2003 -0.6804 0.1674 18 1 -0.4850 0.8401 0.0004 19 1 3.9492 -0.2798 -0.0007 20 1 3.5444 -3.3198 -0.0011 21 1 5.7810 -2.7499 2.1133 22 1 5.6996 -4.2221 1.1177 23 1 7.9715 -4.0192 1.8686 24 1 7.9547 -3.5666 0.1501 25 1 7.7711 -1.5423 2.4112 26 1 9.3059 -2.0325 1.6589 27 1 8.4683 0.0226 0.5928 28 1 8.4045 -1.3288 -0.5674 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687678669.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:43 Heat of formation + Delta-G solvation = -20.156087 kcal Electronic energy + Delta-G solvation = -10540.480435 eV Core-core repulsion = 8681.458120 eV Total energy + Delta-G solvation = -1859.022315 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 198.077 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -36.58141 -34.30618 -32.57250 -30.03235 -27.25546 -24.43894 -21.79918 -20.29970 -18.56669 -17.52835 -16.09866 -14.74927 -14.65608 -14.01166 -13.36721 -13.17100 -13.01853 -12.50477 -12.31892 -11.51301 -11.30871 -11.14919 -11.01288 -10.57548 -10.39038 -10.09846 -9.77444 -9.53192 -9.35655 -8.72670 -7.85882 -7.03918 -6.80349 -4.28749 2.42112 3.02475 3.16121 3.26650 3.30673 3.72187 4.02953 4.95308 5.05500 5.23318 5.35838 5.58347 5.61753 5.77801 5.91918 6.05079 6.10348 6.24493 6.34477 6.45596 6.71835 6.79876 6.91880 7.33182 7.87709 8.39965 8.49669 8.92244 9.12731 10.24240 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.055435 B = 0.010392 C = 0.009095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.974846 B = 2693.743180 C = 3077.820879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.079 3.921 3 Si 0.893 3.107 4 H -0.263 1.263 5 H -0.244 1.244 6 H -0.279 1.279 7 C -0.445 4.445 8 H 0.081 0.919 9 C 0.026 3.974 10 C -0.412 4.412 11 C 0.048 3.952 12 H 0.057 0.943 13 C -0.113 4.113 14 C -0.129 4.129 15 C -0.117 4.117 16 C -0.101 4.101 17 S -0.268 6.268 18 H 0.283 0.717 19 H 0.083 0.917 20 H 0.092 0.908 21 H 0.071 0.929 22 H 0.065 0.935 23 H 0.061 0.939 24 H 0.057 0.943 25 H 0.072 0.928 26 H 0.061 0.939 27 H 0.092 0.908 28 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.572 -0.898 1.741 12.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.138 4.138 3 Si 0.717 3.283 4 H -0.188 1.188 5 H -0.167 1.167 6 H -0.205 1.205 7 C -0.475 4.475 8 H 0.100 0.900 9 C 0.005 3.995 10 C -0.435 4.435 11 C -0.080 4.080 12 H 0.075 0.925 13 C -0.152 4.152 14 C -0.167 4.167 15 C -0.156 4.156 16 C -0.249 4.249 17 S -0.041 6.041 18 H 0.093 0.907 19 H 0.100 0.900 20 H 0.110 0.890 21 H 0.089 0.911 22 H 0.084 0.916 23 H 0.080 0.920 24 H 0.076 0.924 25 H 0.091 0.909 26 H 0.079 0.921 27 H 0.111 0.889 28 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 11.736 0.199 1.714 11.862 hybrid contribution 0.903 -0.386 -0.017 0.982 sum 12.639 -0.187 1.697 12.754 Atomic orbital electron populations 1.69584 1.07964 1.29819 1.37378 1.26315 0.94881 1.01585 0.91012 0.86474 0.81320 0.80320 0.80192 1.18801 1.16729 1.20481 1.19523 0.91097 0.94391 1.42449 0.90039 1.20068 0.93955 0.95138 0.90385 1.21417 0.88421 0.97183 1.36438 1.21612 0.99137 0.89456 0.97764 0.92461 1.21832 0.93221 1.00496 0.99672 1.21584 0.96970 0.96778 1.01364 1.21663 1.00266 0.95236 0.98429 1.23465 0.98071 1.02458 1.00929 1.87162 1.03129 1.17489 1.96338 0.90702 0.90000 0.89034 0.91051 0.91599 0.92044 0.92410 0.90922 0.92054 0.88944 0.90901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -22.89 13.92 55.57 0.77 -22.11 15 2 C 0.08 2.17 5.52 -17.26 -0.10 2.08 15 3 Si 0.89 20.75 27.47 -169.99 -4.67 16.08 15 4 H -0.26 -5.99 7.11 56.52 0.40 -5.59 15 5 H -0.24 -5.71 6.36 56.52 0.36 -5.35 15 6 H -0.28 -6.17 7.11 56.52 0.40 -5.77 15 7 C -0.45 -12.75 9.64 -38.12 -0.37 -13.12 15 8 H 0.08 2.49 8.06 -52.48 -0.42 2.06 15 9 C 0.03 0.69 8.01 -40.03 -0.32 0.37 15 10 C -0.41 -10.11 9.27 -35.45 -0.33 -10.44 15 11 C 0.05 0.99 3.05 -27.83 -0.08 0.90 15 12 H 0.06 1.14 8.14 -51.93 -0.42 0.72 15 13 C -0.11 -1.94 5.02 -26.89 -0.14 -2.08 15 14 C -0.13 -1.79 5.61 -27.16 -0.15 -1.94 15 15 C -0.12 -1.55 5.75 -26.89 -0.15 -1.71 15 16 C -0.10 -1.50 6.45 37.21 0.24 -1.26 15 17 S -0.27 -5.38 19.21 -107.50 -2.07 -7.45 15 18 H 0.28 7.11 8.29 -40.82 -0.34 6.77 15 19 H 0.08 2.14 3.10 -45.43 -0.14 2.00 15 20 H 0.09 2.30 8.05 -52.49 -0.42 1.88 15 21 H 0.07 1.30 8.06 -51.93 -0.42 0.88 15 22 H 0.07 1.09 8.14 -51.93 -0.42 0.66 15 23 H 0.06 0.74 8.14 -51.93 -0.42 0.31 15 24 H 0.06 0.78 8.08 -51.93 -0.42 0.36 15 25 H 0.07 1.01 8.06 -51.93 -0.42 0.60 15 26 H 0.06 0.67 8.14 -51.93 -0.42 0.25 15 27 H 0.09 1.23 8.14 -51.92 -0.42 0.80 15 28 H 0.07 1.01 8.14 -51.93 -0.42 0.59 15 LS Contribution 240.04 15.07 3.62 3.62 Total: -1.00 -28.19 240.04 -7.70 -35.89 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -3.96 Total: 1.17 kcal Atomic # 6 Polarization: -25.80 SS G_CDS: -1.40 Total: -27.19 kcal Atomic # 7 Polarization: -22.89 SS G_CDS: 0.77 Total: -22.11 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.67 Total: 16.08 kcal Atomic # 16 Polarization: -5.38 SS G_CDS: -2.07 Total: -7.45 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -28.19 -7.70 -35.89 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687678669.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.734 kcal (2) G-P(sol) polarization free energy of solvation -28.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds