Wall clock time and date at job start Mon Mar 30 2020 02:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30685 * 1 3 3 Si 1.86803 * 119.99675 * 2 1 4 4 H 1.48501 * 109.46946 * 269.99827 * 3 2 1 5 5 H 1.48501 * 109.47164 * 29.99792 * 3 2 1 6 6 H 1.48499 * 109.47223 * 150.00077 * 3 2 1 7 7 C 1.40300 * 120.00452 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00142 * 359.97438 * 7 2 1 9 9 C 1.40067 * 120.00533 * 180.02562 * 7 2 1 10 10 C 1.35034 * 120.00729 * 180.02562 * 9 7 2 11 11 C 1.50699 * 120.00589 * 179.97438 * 10 9 7 12 12 H 1.09007 * 109.57071 * 5.25435 * 11 10 9 13 13 C 1.53119 * 109.57734 * 125.67924 * 11 10 9 14 14 C 1.52577 * 109.94729 * 182.87427 * 13 11 10 15 15 C 1.52581 * 110.69350 * 289.26602 * 14 13 11 16 16 C 1.53101 * 109.95708 * 70.69611 * 15 14 13 17 17 S 1.81743 * 109.57669 * 244.99942 * 11 10 9 18 18 H 0.97001 * 120.00780 * 359.97438 * 1 2 3 19 19 H 1.08002 * 119.99793 * 359.97438 * 9 7 2 20 20 H 1.08002 * 119.99477 * 359.97438 * 10 9 7 21 21 H 1.09001 * 109.42351 * 62.70733 * 13 11 10 22 22 H 1.08997 * 109.36310 * 303.00343 * 13 11 10 23 23 H 1.09002 * 109.22650 * 168.96513 * 14 13 11 24 24 H 1.09000 * 109.22513 * 49.56250 * 14 13 11 25 25 H 1.08994 * 109.38989 * 190.84217 * 15 14 13 26 26 H 1.08999 * 109.39019 * 310.54822 * 15 14 13 27 27 H 1.08999 * 109.57434 * 56.77893 * 16 15 14 28 28 H 1.08999 * 109.57796 * 177.16781 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 2.4883 2.0465 -1.4001 5 1 1.4381 2.6527 0.7000 6 1 3.5383 1.4403 0.7000 7 6 2.0084 -1.2150 -0.0005 8 1 1.4685 -2.1503 -0.0005 9 6 3.4091 -1.2150 0.0000 10 6 4.0844 -2.3844 -0.0010 11 6 5.5914 -2.3843 -0.0010 12 1 5.9565 -1.3616 0.0939 13 6 6.1045 -3.2268 1.1701 14 6 7.6285 -3.1745 1.2206 15 6 8.2336 -3.9537 0.0566 16 6 7.9907 -3.2045 -1.2563 17 16 6.2004 -3.1066 -1.5536 18 1 -0.4851 0.8400 0.0004 19 1 3.9491 -0.2797 0.0004 20 1 3.5444 -3.3197 -0.0019 21 1 5.7818 -4.2601 1.0420 22 1 5.6978 -2.8352 2.1024 23 1 7.9716 -3.6083 2.1598 24 1 7.9540 -2.1358 1.1648 25 1 9.3059 -4.0670 0.2155 26 1 7.7713 -4.9393 0.0016 27 1 8.4045 -2.1986 -1.1846 28 1 8.4684 -3.7404 -2.0764 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687678670.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:46 Heat of formation + Delta-G solvation = -39.003117 kcal Electronic energy + Delta-G solvation = -10393.798707 eV Core-core repulsion = 8533.959124 eV Total energy + Delta-G solvation = -1859.839583 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 198.077 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -37.93203 -36.22311 -34.36724 -31.74797 -28.75645 -26.05223 -23.43180 -21.55663 -20.38841 -19.62284 -17.58186 -16.73779 -15.88552 -15.45396 -14.90080 -14.66784 -14.40865 -14.13703 -13.84128 -13.16282 -13.14832 -12.78669 -12.19046 -12.05751 -11.99602 -11.77189 -11.56431 -11.41327 -11.03890 -10.52785 -9.84909 -8.88563 -8.54340 -6.43993 0.79387 1.29131 1.29858 1.44514 1.78625 2.05503 2.10459 3.26810 3.84293 3.94861 4.04726 4.24372 4.36891 4.47746 4.60706 4.67948 4.83955 4.90864 5.06857 5.11734 5.14673 5.23599 5.35052 5.44967 5.76734 6.21924 6.30145 6.76755 6.98897 8.21178 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.058670 B = 0.008246 C = 0.008227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.128388 B = 3394.896565 C = 3402.698391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.033 3.967 3 Si 0.973 3.027 4 H -0.254 1.254 5 H -0.258 1.258 6 H -0.244 1.244 7 C -0.475 4.475 8 H 0.036 0.964 9 C 0.021 3.979 10 C -0.381 4.381 11 C 0.057 3.943 12 H 0.066 0.934 13 C -0.108 4.108 14 C -0.124 4.124 15 C -0.114 4.114 16 C -0.071 4.071 17 S -0.373 6.373 18 H 0.296 0.704 19 H 0.087 0.913 20 H 0.059 0.941 21 H 0.057 0.943 22 H 0.067 0.933 23 H 0.086 0.914 24 H 0.064 0.936 25 H 0.099 0.901 26 H 0.064 0.936 27 H 0.084 0.916 28 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.224 -0.390 1.876 15.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.181 4.181 3 Si 0.792 3.208 4 H -0.179 1.179 5 H -0.183 1.183 6 H -0.167 1.167 7 C -0.506 4.506 8 H 0.054 0.946 9 C -0.002 4.002 10 C -0.406 4.406 11 C -0.070 4.070 12 H 0.084 0.916 13 C -0.148 4.148 14 C -0.162 4.162 15 C -0.153 4.153 16 C -0.219 4.219 17 S -0.143 6.143 18 H 0.107 0.893 19 H 0.104 0.896 20 H 0.078 0.922 21 H 0.075 0.925 22 H 0.086 0.914 23 H 0.105 0.895 24 H 0.083 0.917 25 H 0.117 0.883 26 H 0.083 0.917 27 H 0.103 0.897 28 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 14.440 -0.625 0.917 14.482 hybrid contribution -0.034 0.608 0.778 0.988 sum 14.406 -0.017 1.695 14.505 Atomic orbital electron populations 1.69623 1.09550 1.31811 1.37179 1.27273 0.95793 1.05116 0.89964 0.85317 0.79641 0.75236 0.80596 1.17850 1.18265 1.16724 1.19575 0.92332 0.93792 1.44856 0.94558 1.20110 0.93183 0.95719 0.91219 1.21545 0.91431 0.95539 1.32080 1.21532 0.95770 0.98747 0.90950 0.91606 1.21763 0.96268 0.99616 0.97154 1.21552 0.93813 1.01115 0.99679 1.21670 1.02362 0.98803 0.92441 1.23459 0.92087 1.04190 1.02183 1.87434 1.09661 1.85294 1.31905 0.89325 0.89554 0.92222 0.92466 0.91397 0.89496 0.91716 0.88316 0.91700 0.89700 0.87177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -47.38 13.92 21.89 0.30 -47.07 15 2 C 0.03 1.76 5.52 85.37 0.47 2.23 15 3 Si 0.97 39.64 27.47 68.60 1.88 41.52 15 4 H -0.25 -9.96 7.11 99.48 0.71 -9.26 15 5 H -0.26 -9.66 7.11 99.48 0.71 -8.95 15 6 H -0.24 -9.47 6.36 99.48 0.63 -8.83 15 7 C -0.47 -27.63 9.64 23.22 0.22 -27.41 15 8 H 0.04 2.35 8.06 -2.91 -0.02 2.33 15 9 C 0.02 1.08 8.50 21.98 0.19 1.27 15 10 C -0.38 -18.99 8.56 24.95 0.21 -18.78 15 11 C 0.06 2.28 2.88 29.89 0.09 2.36 15 12 H 0.07 2.59 7.85 -2.38 -0.02 2.57 15 13 C -0.11 -3.58 5.02 30.49 0.15 -3.42 15 14 C -0.12 -3.00 5.61 30.31 0.17 -2.83 15 15 C -0.11 -2.52 5.75 30.49 0.18 -2.34 15 16 C -0.07 -1.84 6.46 72.02 0.46 -1.38 15 17 S -0.37 -14.30 21.68 -56.49 -1.22 -15.53 15 18 H 0.30 14.50 8.29 -92.71 -0.77 13.73 15 19 H 0.09 4.13 5.12 -2.91 -0.01 4.11 15 20 H 0.06 3.26 8.05 -2.91 -0.02 3.24 15 21 H 0.06 1.98 8.05 -2.39 -0.02 1.96 15 22 H 0.07 2.24 8.14 -2.39 -0.02 2.22 15 23 H 0.09 1.71 8.14 -2.39 -0.02 1.69 15 24 H 0.06 1.51 8.08 -2.39 -0.02 1.49 15 25 H 0.10 1.56 8.14 -2.39 -0.02 1.54 15 26 H 0.06 1.55 8.05 -2.39 -0.02 1.53 15 27 H 0.08 2.02 8.14 -2.39 -0.02 2.00 15 28 H 0.11 2.44 8.14 -2.39 -0.02 2.42 15 Total: -1.00 -61.70 243.86 4.15 -57.55 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: 1.04 Total: 13.82 kcal Atomic # 6 Polarization: -52.44 SS G_CDS: 2.15 Total: -50.29 kcal Atomic # 7 Polarization: -47.38 SS G_CDS: 0.30 Total: -47.07 kcal Atomic # 14 Polarization: 39.64 SS G_CDS: 1.88 Total: 41.52 kcal Atomic # 16 Polarization: -14.30 SS G_CDS: -1.22 Total: -15.53 kcal Total: -61.70 4.15 -57.55 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687678670.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.548 kcal (2) G-P(sol) polarization free energy of solvation -61.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds