Wall clock time and date at job start Mon Mar 30 2020 02:15:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 120.00295 * 2 1 4 4 H 1.48497 * 109.47533 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46792 * 300.00096 * 3 2 1 6 6 H 1.48501 * 109.47330 * 59.99455 * 3 2 1 7 7 C 1.37878 * 119.99957 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00300 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99927 * 0.02562 * 7 2 1 10 10 O 1.42905 * 110.99062 * 59.29376 * 9 7 2 11 11 C 1.54949 * 111.16304 * 295.07207 * 9 7 2 12 12 O 1.43649 * 105.13497 * 205.62234 * 11 9 7 13 13 C 1.43237 * 109.97327 * 24.42471 * 12 11 9 14 14 H 1.08993 * 109.82961 * 238.77345 * 13 12 11 15 15 C 1.53007 * 109.90454 * 117.84430 * 13 12 11 16 16 C 1.52994 * 117.49440 * 130.56939 * 15 13 12 17 17 C 1.52996 * 117.49698 * 61.90971 * 15 13 12 18 18 C 1.54379 * 107.58789 * 358.29127 * 13 12 11 19 19 H 0.97005 * 119.99692 * 0.02562 * 1 2 3 20 20 H 0.96696 * 114.00036 * 304.19854 * 10 9 7 21 21 H 1.09006 * 110.30312 * 324.53179 * 11 9 7 22 22 H 1.08991 * 110.31341 * 86.70443 * 11 9 7 23 23 H 1.09002 * 115.54898 * 276.23614 * 15 13 12 24 24 H 1.08999 * 117.50384 * 359.97438 * 16 15 13 25 25 H 1.09003 * 117.49767 * 145.02613 * 16 15 13 26 26 H 1.09001 * 117.49830 * 214.97921 * 17 15 13 27 27 H 1.09000 * 117.50215 * 359.97109 * 17 15 13 28 28 H 1.09005 * 110.84448 * 220.45529 * 18 13 12 29 29 H 1.08999 * 111.02493 * 96.91063 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 8 0.4055 -2.6020 -1.1469 11 6 0.4405 -2.6771 1.3091 12 8 0.2974 -4.0972 1.4714 13 6 1.3538 -4.7772 0.7834 14 1 0.9346 -5.4532 0.0382 15 6 2.2019 -5.5673 1.7821 16 6 2.4969 -7.0324 1.4546 17 6 1.5101 -6.6810 2.5708 18 6 2.2233 -3.7069 0.0895 19 1 -0.4850 0.8401 -0.0004 20 1 -0.2182 -1.8693 -1.2429 21 1 0.9857 -2.2530 2.1523 22 1 -0.5381 -2.2065 1.2150 23 1 2.9803 -4.9988 2.2912 24 1 2.0864 -7.4336 0.5280 25 1 3.4691 -7.4280 1.7487 26 1 1.8335 -6.8454 3.5987 27 1 0.4507 -6.8504 2.3786 28 1 2.5242 -4.0366 -0.9050 29 1 3.0954 -3.4590 0.6945 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691317544.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:01 Heat of formation + Delta-G solvation = -98.507274 kcal Electronic energy + Delta-G solvation = -13080.014634 eV Core-core repulsion = 10774.841886 eV Total energy + Delta-G solvation = -2305.172748 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.65469 -37.84366 -36.38608 -34.23735 -32.00563 -29.68359 -26.87739 -24.22479 -23.19052 -21.76417 -21.21239 -19.12145 -17.75013 -17.04423 -16.49651 -16.12024 -15.78220 -15.43520 -14.74211 -14.12714 -13.71116 -13.28111 -13.18060 -12.80776 -12.58756 -12.37814 -12.29771 -12.27287 -12.15469 -11.43414 -11.20195 -10.88672 -10.64644 -10.45678 -10.02536 -8.29644 -6.46342 1.39820 1.42835 1.54202 2.35188 2.76051 2.95690 3.36310 3.68065 3.81758 3.97716 4.18109 4.22499 4.36257 4.55611 4.63899 4.71375 4.80754 4.99697 5.02040 5.11587 5.26478 5.30355 5.36465 5.42526 5.71005 5.97178 6.25071 6.62377 7.25636 7.33699 8.77307 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.063006 B = 0.009775 C = 0.009445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.297947 B = 2863.817782 C = 2963.729269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.027 3.973 3 Si 0.969 3.031 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.277 1.277 7 C -0.561 4.561 8 H 0.063 0.937 9 C 0.209 3.791 10 O -0.592 6.592 11 C 0.051 3.949 12 O -0.403 6.403 13 C 0.112 3.888 14 H 0.067 0.933 15 C -0.184 4.184 16 C -0.155 4.155 17 C -0.169 4.169 18 C -0.125 4.125 19 H 0.273 0.727 20 H 0.378 0.622 21 H 0.043 0.957 22 H 0.065 0.935 23 H 0.104 0.896 24 H 0.097 0.903 25 H 0.117 0.883 26 H 0.108 0.892 27 H 0.085 0.915 28 H 0.074 0.926 29 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.165 -7.477 2.867 9.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.174 4.174 3 Si 0.793 3.207 4 H -0.192 1.192 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.598 4.598 8 H 0.082 0.918 9 C 0.170 3.830 10 O -0.401 6.401 11 C -0.026 4.026 12 O -0.323 6.323 13 C 0.055 3.945 14 H 0.085 0.915 15 C -0.202 4.202 16 C -0.192 4.192 17 C -0.206 4.206 18 C -0.163 4.163 19 H 0.082 0.918 20 H 0.228 0.772 21 H 0.061 0.939 22 H 0.083 0.917 23 H 0.122 0.878 24 H 0.116 0.884 25 H 0.135 0.865 26 H 0.126 0.874 27 H 0.104 0.896 28 H 0.092 0.908 29 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 4.193 -8.023 2.897 9.505 hybrid contribution -0.105 1.779 -0.051 1.783 sum 4.088 -6.244 2.845 7.987 Atomic orbital electron populations 1.69749 1.07083 1.28649 1.50159 1.25830 0.95900 1.02799 0.92843 0.85344 0.78901 0.78589 0.77819 1.19199 1.20336 1.20240 1.21789 0.93862 0.91369 1.52820 0.91841 1.20398 0.87040 0.93214 0.82377 1.86075 1.54205 1.51475 1.48338 1.23841 1.00509 0.79445 0.98772 1.88262 1.49759 1.19278 1.75006 1.22206 0.86956 0.93381 0.91966 0.91490 1.22651 1.02538 0.91751 1.03252 1.23065 1.01300 0.94793 1.00014 1.22876 0.98318 1.01948 0.97466 1.23035 0.98073 0.94265 1.00902 0.91759 0.77194 0.93901 0.91668 0.87795 0.88418 0.86461 0.87415 0.89637 0.90756 0.89632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.31 10.73 21.45 0.23 -49.08 15 2 C 0.03 1.41 5.28 84.65 0.45 1.86 15 3 Si 0.97 41.63 29.54 68.60 2.03 43.66 15 4 H -0.27 -11.26 7.11 99.48 0.71 -10.55 15 5 H -0.28 -11.72 7.11 99.48 0.71 -11.02 15 6 H -0.28 -11.63 7.11 99.48 0.71 -10.92 15 7 C -0.56 -30.17 8.26 25.60 0.21 -29.96 15 8 H 0.06 3.35 7.78 -2.91 -0.02 3.33 15 9 C 0.21 10.77 0.91 -10.08 -0.01 10.76 15 10 O -0.59 -32.12 13.21 -148.98 -1.97 -34.09 15 11 C 0.05 2.59 6.40 72.65 0.47 3.05 15 12 O -0.40 -18.85 10.97 -148.98 -1.63 -20.48 15 13 C 0.11 4.49 3.71 31.06 0.12 4.60 15 14 H 0.07 2.64 7.93 -2.39 -0.02 2.62 15 15 C -0.18 -5.81 5.38 -10.79 -0.06 -5.87 15 16 C -0.15 -3.71 10.18 30.62 0.31 -3.40 15 17 C -0.17 -4.54 10.20 30.62 0.31 -4.23 15 18 C -0.13 -5.42 5.74 31.85 0.18 -5.24 15 19 H 0.27 13.84 8.31 -92.70 -0.77 13.07 15 20 H 0.38 20.86 7.19 -74.06 -0.53 20.32 15 21 H 0.04 2.18 8.02 -2.38 -0.02 2.17 15 22 H 0.07 3.53 7.63 -2.39 -0.02 3.51 15 23 H 0.10 3.24 7.85 -2.39 -0.02 3.22 15 24 H 0.10 2.26 8.06 -2.39 -0.02 2.24 15 25 H 0.12 2.23 8.14 -2.39 -0.02 2.21 15 26 H 0.11 2.46 8.14 -2.39 -0.02 2.44 15 27 H 0.09 2.45 8.14 -2.39 -0.02 2.43 15 28 H 0.07 3.10 8.14 -2.38 -0.02 3.08 15 29 H 0.09 3.49 7.54 -2.39 -0.02 3.47 15 Total: -1.00 -58.04 244.69 1.24 -56.80 By element: Atomic # 1 Polarization: 31.02 SS G_CDS: 0.61 Total: 31.62 kcal Atomic # 6 Polarization: -30.40 SS G_CDS: 1.98 Total: -28.43 kcal Atomic # 7 Polarization: -49.31 SS G_CDS: 0.23 Total: -49.08 kcal Atomic # 8 Polarization: -50.97 SS G_CDS: -3.60 Total: -54.57 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.66 kcal Total: -58.04 1.24 -56.80 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691317544.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.707 kcal (2) G-P(sol) polarization free energy of solvation -58.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds