Wall clock time and date at job start Mon Mar 30 2020 02:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 O 1.42901 * 110.45838 * 57.11379 * 9 7 2 11 11 C 1.54480 * 110.50922 * 294.36310 * 9 7 2 12 12 O 1.44421 * 104.80134 * 217.37969 * 11 9 7 13 13 C 1.44422 * 105.27821 * 40.50746 * 12 11 9 14 14 H 1.09003 * 110.45989 * 78.37153 * 13 12 11 15 15 C 1.53001 * 110.37317 * 200.65882 * 13 12 11 16 16 C 1.53000 * 117.50082 * 4.12988 * 15 13 12 17 17 C 1.53001 * 117.49977 * 295.46675 * 15 13 12 18 18 C 1.54475 * 104.80552 * 319.49433 * 13 12 11 19 19 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 20 20 H 0.96698 * 113.99752 * 300.70520 * 10 9 7 21 21 H 1.09003 * 110.37123 * 336.20739 * 11 9 7 22 22 H 1.08996 * 110.37431 * 98.54336 * 11 9 7 23 23 H 1.08998 * 115.54660 * 149.80625 * 15 13 12 24 24 H 1.08996 * 117.49333 * 359.97438 * 16 15 13 25 25 H 1.08995 * 117.50101 * 145.02452 * 16 15 13 26 26 H 1.09001 * 117.50481 * 214.98297 * 17 15 13 27 27 H 1.09008 * 117.49585 * 0.02562 * 17 15 13 28 28 H 1.09006 * 110.50819 * 265.33219 * 18 13 12 29 29 H 1.08997 * 110.51766 * 142.62207 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 8 0.3764 -2.5659 -1.1336 11 6 0.4577 -2.6721 1.3089 12 8 0.5563 -4.0797 1.6169 13 6 1.9176 -4.4440 1.3011 14 1 2.5920 -4.1224 2.0948 15 6 2.0291 -5.9550 1.0885 16 6 0.7372 -6.7730 1.1411 17 6 1.7460 -6.8601 2.2891 18 6 2.2335 -3.6916 -0.0106 19 1 -0.4850 0.8401 -0.0004 20 1 -0.2806 -1.8571 -1.1644 21 1 0.9070 -2.0774 2.1043 22 1 -0.5843 -2.3875 1.1635 23 1 2.7996 -6.2755 0.3873 24 1 -0.1920 -6.2347 1.3275 25 1 0.6578 -7.6319 0.4748 26 1 2.3298 -7.7763 2.3776 27 1 1.4799 -6.3790 3.2304 28 1 2.0506 -4.3334 -0.8725 29 1 3.2642 -3.3372 -0.0090 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691317547.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:06 Heat of formation + Delta-G solvation = -78.428530 kcal Electronic energy + Delta-G solvation = -13143.076812 eV Core-core repulsion = 10838.774743 eV Total energy + Delta-G solvation = -2304.302069 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.93391 -36.28704 -34.48185 -32.12867 -30.21363 -27.70362 -24.75811 -22.92518 -21.95738 -19.69313 -19.64814 -17.17387 -15.63288 -15.26224 -14.92988 -14.59061 -13.96084 -13.77144 -12.98591 -12.27154 -11.90340 -11.34984 -11.19332 -11.13908 -11.05042 -10.84438 -10.50498 -10.43244 -10.26378 -9.98044 -9.62161 -9.36298 -8.76240 -8.56755 -8.03422 -6.28003 -4.35311 3.20170 3.27327 3.30334 4.16343 4.26135 4.83772 4.96236 5.11738 5.32126 5.37785 5.83173 5.93117 5.98779 6.01286 6.11694 6.20820 6.45251 6.51162 6.65254 6.67196 6.82063 6.99016 7.14760 7.40134 7.74249 7.76045 8.13271 8.68708 9.33833 9.52728 10.80216 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.068554 B = 0.009911 C = 0.009627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 408.337133 B = 2824.555688 C = 2907.848428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.068 3.932 3 Si 0.903 3.097 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.537 4.537 8 H 0.064 0.936 9 C 0.227 3.773 10 O -0.586 6.586 11 C 0.040 3.960 12 O -0.389 6.389 13 C 0.106 3.894 14 H 0.061 0.939 15 C -0.148 4.148 16 C -0.164 4.164 17 C -0.183 4.183 18 C -0.131 4.131 19 H 0.269 0.731 20 H 0.382 0.618 21 H 0.053 0.947 22 H 0.085 0.915 23 H 0.108 0.892 24 H 0.105 0.895 25 H 0.085 0.915 26 H 0.087 0.913 27 H 0.092 0.908 28 H 0.067 0.933 29 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.497 -6.891 2.601 7.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.134 4.134 3 Si 0.731 3.269 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.575 4.575 8 H 0.082 0.918 9 C 0.187 3.813 10 O -0.395 6.395 11 C -0.037 4.037 12 O -0.309 6.309 13 C 0.048 3.952 14 H 0.079 0.921 15 C -0.166 4.166 16 C -0.201 4.201 17 C -0.220 4.220 18 C -0.169 4.169 19 H 0.080 0.920 20 H 0.233 0.767 21 H 0.071 0.929 22 H 0.103 0.897 23 H 0.126 0.874 24 H 0.124 0.876 25 H 0.103 0.897 26 H 0.105 0.895 27 H 0.111 0.889 28 H 0.085 0.915 29 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.531 -7.429 2.557 8.254 hybrid contribution 0.262 1.676 0.072 1.698 sum 2.794 -5.753 2.629 6.914 Atomic orbital electron populations 1.69596 1.06027 1.27780 1.50604 1.25069 0.95060 0.99694 0.93560 0.86404 0.79780 0.82405 0.78325 1.20389 1.21001 1.19729 1.21728 0.93634 0.90581 1.51543 0.91799 1.19852 0.86400 0.91925 0.83108 1.86135 1.50154 1.55318 1.47910 1.24203 1.01918 0.79011 0.98520 1.88943 1.27717 1.26923 1.87335 1.22273 0.85298 0.91425 0.96229 0.92078 1.22378 1.00632 0.92347 1.01238 1.22821 0.95137 1.01300 1.00879 1.22931 1.04050 1.01113 0.93943 1.22864 0.99911 0.97418 0.96675 0.92049 0.76718 0.92919 0.89702 0.87425 0.87630 0.89656 0.89498 0.88933 0.91455 0.90993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.11 10.90 55.43 0.60 -23.51 15 2 C 0.07 1.81 5.28 -17.82 -0.09 1.71 15 3 Si 0.90 20.57 29.54 -169.99 -5.02 15.55 15 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 15 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 15 6 H -0.27 -6.14 7.11 56.52 0.40 -5.74 15 7 C -0.54 -14.47 8.12 -34.44 -0.28 -14.75 15 8 H 0.06 1.69 7.38 -52.49 -0.39 1.31 15 9 C 0.23 5.83 1.07 -90.20 -0.10 5.73 15 10 O -0.59 -15.88 12.98 -35.23 -0.46 -16.34 15 11 C 0.04 0.98 6.17 37.93 0.23 1.22 15 12 O -0.39 -8.82 9.78 -35.23 -0.34 -9.17 15 13 C 0.11 2.12 3.64 -25.96 -0.09 2.02 15 14 H 0.06 1.18 8.14 -51.93 -0.42 0.76 15 15 C -0.15 -2.46 5.60 -90.62 -0.51 -2.96 15 16 C -0.16 -2.60 9.89 -26.69 -0.26 -2.87 15 17 C -0.18 -2.64 10.25 -26.69 -0.27 -2.92 15 18 C -0.13 -2.90 6.07 -25.17 -0.15 -3.05 15 19 H 0.27 6.87 8.31 -40.82 -0.34 6.53 15 20 H 0.38 10.38 7.05 45.56 0.32 10.70 15 21 H 0.05 1.32 7.86 -51.93 -0.41 0.91 15 22 H 0.08 2.17 8.03 -51.93 -0.42 1.75 15 23 H 0.11 1.61 8.13 -51.93 -0.42 1.19 15 24 H 0.11 1.88 7.06 -51.93 -0.37 1.51 15 25 H 0.08 1.17 8.14 -51.93 -0.42 0.75 15 26 H 0.09 1.04 8.14 -51.93 -0.42 0.62 15 27 H 0.09 1.37 8.14 -51.92 -0.42 0.95 15 28 H 0.07 1.48 7.73 -51.93 -0.40 1.08 15 29 H 0.07 1.51 7.46 -51.93 -0.39 1.13 15 LS Contribution 242.19 15.07 3.65 3.65 Total: -1.00 -27.78 242.19 -6.39 -34.17 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -3.30 Total: 11.51 kcal Atomic # 6 Polarization: -14.34 SS G_CDS: -1.53 Total: -15.87 kcal Atomic # 7 Polarization: -24.11 SS G_CDS: 0.60 Total: -23.51 kcal Atomic # 8 Polarization: -24.70 SS G_CDS: -0.80 Total: -25.51 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -27.78 -6.39 -34.17 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691317547.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.257 kcal (2) G-P(sol) polarization free energy of solvation -27.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds