Wall clock time and date at job start Mon Mar 30 2020 02:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 O 1.42901 * 110.45838 * 57.11379 * 9 7 2 11 11 C 1.54480 * 110.50922 * 294.36310 * 9 7 2 12 12 O 1.44421 * 104.80134 * 217.37969 * 11 9 7 13 13 C 1.44422 * 105.27821 * 40.50746 * 12 11 9 14 14 H 1.09003 * 110.45989 * 78.37153 * 13 12 11 15 15 C 1.53001 * 110.37317 * 200.65882 * 13 12 11 16 16 C 1.53000 * 117.50082 * 4.12988 * 15 13 12 17 17 C 1.53001 * 117.49977 * 295.46675 * 15 13 12 18 18 C 1.54475 * 104.80552 * 319.49433 * 13 12 11 19 19 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 20 20 H 0.96698 * 113.99752 * 300.70520 * 10 9 7 21 21 H 1.09003 * 110.37123 * 336.20739 * 11 9 7 22 22 H 1.08996 * 110.37431 * 98.54336 * 11 9 7 23 23 H 1.08998 * 115.54660 * 149.80625 * 15 13 12 24 24 H 1.08996 * 117.49333 * 359.97438 * 16 15 13 25 25 H 1.08995 * 117.50101 * 145.02452 * 16 15 13 26 26 H 1.09001 * 117.50481 * 214.98297 * 17 15 13 27 27 H 1.09008 * 117.49585 * 0.02562 * 17 15 13 28 28 H 1.09006 * 110.50819 * 265.33219 * 18 13 12 29 29 H 1.08997 * 110.51766 * 142.62207 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 8 0.3764 -2.5659 -1.1336 11 6 0.4577 -2.6721 1.3089 12 8 0.5563 -4.0797 1.6169 13 6 1.9176 -4.4440 1.3011 14 1 2.5920 -4.1224 2.0948 15 6 2.0291 -5.9550 1.0885 16 6 0.7372 -6.7730 1.1411 17 6 1.7460 -6.8601 2.2891 18 6 2.2335 -3.6916 -0.0106 19 1 -0.4850 0.8401 -0.0004 20 1 -0.2806 -1.8571 -1.1644 21 1 0.9070 -2.0774 2.1043 22 1 -0.5843 -2.3875 1.1635 23 1 2.7996 -6.2755 0.3873 24 1 -0.1920 -6.2347 1.3275 25 1 0.6578 -7.6319 0.4748 26 1 2.3298 -7.7763 2.3776 27 1 1.4799 -6.3790 3.2304 28 1 2.0506 -4.3334 -0.8725 29 1 3.2642 -3.3372 -0.0090 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691317547.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:05 Heat of formation + Delta-G solvation = -97.166107 kcal Electronic energy + Delta-G solvation = -13143.889334 eV Core-core repulsion = 10838.774743 eV Total energy + Delta-G solvation = -2305.114591 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.67349 -37.82042 -36.31992 -34.19760 -32.04682 -29.53968 -26.77479 -24.58332 -23.13599 -21.57453 -21.15652 -19.20673 -17.20520 -17.19273 -16.71347 -16.23713 -15.75468 -15.49693 -14.60425 -14.15475 -13.80004 -13.24361 -12.95249 -12.80168 -12.72740 -12.31006 -12.26469 -12.17412 -12.07329 -11.51051 -11.12099 -10.97384 -10.68915 -10.44004 -10.05558 -8.29081 -6.44716 1.40587 1.42294 1.52309 2.35690 2.90618 2.96749 3.16226 3.68940 4.03077 4.06086 4.11092 4.24639 4.42262 4.52423 4.70750 4.71183 4.84757 4.97749 5.07966 5.13297 5.21112 5.27396 5.38764 5.45812 5.70835 5.89676 6.14176 6.63959 7.27288 7.40042 8.78171 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.068554 B = 0.009911 C = 0.009627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 408.337133 B = 2824.555688 C = 2907.848428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.026 3.974 3 Si 0.967 3.033 4 H -0.276 1.276 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.562 4.562 8 H 0.063 0.937 9 C 0.209 3.791 10 O -0.596 6.596 11 C 0.052 3.948 12 O -0.395 6.395 13 C 0.103 3.897 14 H 0.069 0.931 15 C -0.163 4.163 16 C -0.173 4.173 17 C -0.160 4.160 18 C -0.127 4.127 19 H 0.273 0.727 20 H 0.377 0.623 21 H 0.043 0.957 22 H 0.067 0.933 23 H 0.129 0.871 24 H 0.078 0.922 25 H 0.109 0.891 26 H 0.120 0.880 27 H 0.086 0.914 28 H 0.066 0.934 29 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.671 -7.589 2.947 8.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.174 4.174 3 Si 0.792 3.208 4 H -0.202 1.202 5 H -0.205 1.205 6 H -0.192 1.192 7 C -0.600 4.600 8 H 0.081 0.919 9 C 0.169 3.831 10 O -0.405 6.405 11 C -0.025 4.025 12 O -0.315 6.315 13 C 0.046 3.954 14 H 0.086 0.914 15 C -0.181 4.181 16 C -0.210 4.210 17 C -0.196 4.196 18 C -0.165 4.165 19 H 0.082 0.918 20 H 0.227 0.773 21 H 0.061 0.939 22 H 0.085 0.915 23 H 0.147 0.853 24 H 0.097 0.903 25 H 0.127 0.873 26 H 0.138 0.862 27 H 0.104 0.896 28 H 0.085 0.915 29 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.708 -8.145 2.908 9.410 hybrid contribution -0.127 1.870 -0.035 1.875 sum 3.582 -6.274 2.873 7.775 Atomic orbital electron populations 1.69681 1.07079 1.28652 1.50377 1.25821 0.95906 1.02757 0.92959 0.85412 0.78685 0.78398 0.78286 1.20159 1.20469 1.19164 1.21970 0.93769 0.91653 1.52580 0.91923 1.20158 0.86872 0.93195 0.82858 1.86127 1.50335 1.55157 1.48906 1.23882 1.00534 0.80116 0.97938 1.88940 1.29656 1.25543 1.87341 1.22448 0.83837 0.93906 0.95195 0.91362 1.22392 1.01906 0.90042 1.03715 1.22855 0.93845 1.01705 1.02581 1.23022 1.02652 1.01334 0.92642 1.22856 0.99426 0.96331 0.97877 0.91783 0.77301 0.93858 0.91506 0.85325 0.90303 0.87271 0.86159 0.89592 0.91541 0.90173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.51 10.90 21.45 0.23 -49.28 15 2 C 0.03 1.36 5.28 84.66 0.45 1.81 15 3 Si 0.97 41.83 29.54 68.60 2.03 43.85 15 4 H -0.28 -11.79 7.11 99.48 0.71 -11.08 15 5 H -0.28 -11.77 7.11 99.48 0.71 -11.07 15 6 H -0.27 -11.24 7.11 99.48 0.71 -10.54 15 7 C -0.56 -30.36 8.12 25.60 0.21 -30.15 15 8 H 0.06 3.31 7.38 -2.91 -0.02 3.29 15 9 C 0.21 10.79 1.07 -10.52 -0.01 10.78 15 10 O -0.60 -32.86 12.98 -148.98 -1.93 -34.79 15 11 C 0.05 2.62 6.17 72.49 0.45 3.07 15 12 O -0.39 -17.90 9.78 -148.98 -1.46 -19.35 15 13 C 0.10 4.03 3.64 31.10 0.11 4.15 15 14 H 0.07 2.55 8.14 -2.39 -0.02 2.53 15 15 C -0.16 -5.00 5.60 -10.79 -0.06 -5.07 15 16 C -0.17 -5.10 9.89 30.62 0.30 -4.80 15 17 C -0.16 -4.09 10.25 30.62 0.31 -3.77 15 18 C -0.13 -5.56 6.07 31.61 0.19 -5.36 15 19 H 0.27 13.91 8.31 -92.70 -0.77 13.14 15 20 H 0.38 21.02 7.05 -74.06 -0.52 20.50 15 21 H 0.04 2.21 7.86 -2.39 -0.02 2.19 15 22 H 0.07 3.53 8.03 -2.39 -0.02 3.51 15 23 H 0.13 3.43 8.13 -2.39 -0.02 3.41 15 24 H 0.08 2.76 7.06 -2.39 -0.02 2.75 15 25 H 0.11 2.67 8.14 -2.39 -0.02 2.65 15 26 H 0.12 2.32 8.14 -2.39 -0.02 2.30 15 27 H 0.09 2.33 8.14 -2.38 -0.02 2.31 15 28 H 0.07 2.87 7.73 -2.38 -0.02 2.85 15 29 H 0.08 3.30 7.46 -2.39 -0.02 3.29 15 Total: -1.00 -58.33 242.19 1.44 -56.89 By element: Atomic # 1 Polarization: 31.41 SS G_CDS: 0.62 Total: 32.03 kcal Atomic # 6 Polarization: -31.30 SS G_CDS: 1.95 Total: -29.35 kcal Atomic # 7 Polarization: -49.51 SS G_CDS: 0.23 Total: -49.28 kcal Atomic # 8 Polarization: -50.76 SS G_CDS: -3.39 Total: -54.15 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.85 kcal Total: -58.33 1.44 -56.89 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691317547.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.276 kcal (2) G-P(sol) polarization free energy of solvation -58.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds