Wall clock time and date at job start Mon Mar 30 2020 02:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47495 * 2 1 4 4 C 1.53002 * 109.47126 * 239.99246 * 2 1 3 5 5 C 1.53001 * 109.46897 * 64.57192 * 4 2 1 6 6 C 1.50701 * 115.54784 * 54.66838 * 5 4 2 7 7 H 1.08004 * 120.00296 * 264.75894 * 6 5 4 8 8 C 1.37877 * 120.00011 * 84.76265 * 6 5 4 9 9 N 1.31514 * 120.00008 * 4.18313 * 8 6 5 10 10 Si 1.86805 * 119.99875 * 184.18770 * 8 6 5 11 11 H 1.48498 * 109.47374 * 59.99639 * 10 8 6 12 12 H 1.48498 * 109.46953 * 179.97438 * 10 8 6 13 13 H 1.48502 * 109.47209 * 299.99579 * 10 8 6 14 14 C 1.53000 * 117.50190 * 268.99928 * 5 4 2 15 15 C 1.52994 * 117.49784 * 200.33740 * 5 4 2 16 16 C 1.50701 * 109.46914 * 119.99793 * 2 1 3 17 17 O 1.20825 * 120.00137 * 119.99687 * 16 2 1 18 18 O 1.34231 * 119.99826 * 299.99677 * 16 2 1 19 19 H 1.08994 * 109.47442 * 178.62236 * 1 2 3 20 20 H 1.09001 * 109.47363 * 298.62892 * 1 2 3 21 21 H 1.08998 * 109.47010 * 58.62002 * 1 2 3 22 22 H 1.09004 * 109.46928 * 184.57131 * 4 2 1 23 23 H 1.09000 * 109.47338 * 304.57266 * 4 2 1 24 24 H 0.97003 * 119.99520 * 185.01452 * 9 8 6 25 25 H 1.09006 * 117.49445 * 359.97438 * 14 5 4 26 26 H 1.08998 * 117.50001 * 145.01693 * 14 5 4 27 27 H 1.09005 * 117.49705 * 214.97920 * 15 5 4 28 28 H 1.08995 * 117.50353 * 0.02562 * 15 5 4 29 29 H 0.96707 * 117.00031 * 180.02562 * 18 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 1.6260 0.0630 -2.4958 6 6 2.0414 1.5114 -2.5200 7 1 1.3534 2.2762 -2.1908 8 6 3.2998 1.8604 -2.9625 9 7 4.1077 0.9393 -3.4404 10 14 3.8571 3.6416 -2.8830 11 1 3.8311 4.1060 -1.4728 12 1 5.2393 3.7519 -3.4146 13 1 2.9442 4.4828 -3.6981 14 6 0.2901 -0.2997 -3.1476 15 6 1.6049 -0.6882 -3.8285 16 6 2.0322 -0.7104 1.2305 17 8 2.7268 -1.6928 1.1197 18 8 1.7080 -0.2517 2.4496 19 1 -0.3634 -1.0273 -0.0247 20 1 -0.3634 0.4924 0.9020 21 1 -0.3633 0.5351 -0.8773 22 1 3.1269 -0.7929 -1.2091 23 1 1.6113 -1.7227 -1.2910 24 1 5.0176 1.1712 -3.6837 25 1 -0.2937 -1.0976 -2.6883 26 1 -0.2881 0.5092 -3.5941 27 1 1.8910 -0.1347 -4.7228 28 1 1.8854 -1.7414 -3.8171 29 1 2.0540 -0.7404 3.2090 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691696020.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:51 Heat of formation + Delta-G solvation = -87.289715 kcal Electronic energy + Delta-G solvation = -12973.008248 eV Core-core repulsion = 10668.321929 eV Total energy + Delta-G solvation = -2304.686318 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.87997 -37.03201 -35.65446 -33.01932 -31.87598 -26.68212 -25.31861 -24.00433 -20.98272 -20.13132 -18.85268 -17.54016 -15.99060 -15.74238 -15.23304 -14.58669 -13.71274 -13.48538 -13.27074 -12.55520 -11.93166 -11.67281 -11.44371 -11.13792 -11.01004 -10.90035 -10.56686 -10.45467 -10.30407 -10.01566 -9.88903 -9.26763 -8.88324 -8.34112 -7.94557 -6.01738 -4.09901 2.72277 3.30048 3.36074 3.37546 3.56021 4.40120 5.26915 5.35262 5.56969 5.65246 5.77503 6.13062 6.21786 6.38084 6.41164 6.62363 6.67959 6.79164 6.83018 6.91110 6.98386 7.19122 7.26469 7.57062 7.68646 7.88242 8.36230 8.45616 8.92602 9.56188 11.06298 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.030756 B = 0.013118 C = 0.011093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.185082 B = 2134.020824 C = 2523.592673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.069 4.069 3 H 0.120 0.880 4 C -0.055 4.055 5 C 0.046 3.954 6 C -0.498 4.498 7 H 0.060 0.940 8 C 0.072 3.928 9 N -0.875 5.875 10 Si 0.885 3.115 11 H -0.276 1.276 12 H -0.288 1.288 13 H -0.277 1.277 14 C -0.215 4.215 15 C -0.154 4.154 16 C 0.478 3.522 17 O -0.523 6.523 18 O -0.522 6.522 19 H 0.047 0.953 20 H 0.053 0.947 21 H 0.083 0.917 22 H 0.070 0.930 23 H 0.038 0.962 24 H 0.260 0.740 25 H 0.063 0.937 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.060 0.940 29 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.043 -1.023 6.806 8.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.088 4.088 3 H 0.138 0.862 4 C -0.093 4.093 5 C 0.045 3.955 6 C -0.536 4.536 7 H 0.078 0.922 8 C -0.132 4.132 9 N -0.511 5.511 10 Si 0.713 3.287 11 H -0.202 1.202 12 H -0.213 1.213 13 H -0.202 1.202 14 C -0.252 4.252 15 C -0.192 4.192 16 C 0.322 3.678 17 O -0.411 6.411 18 O -0.333 6.333 19 H 0.066 0.934 20 H 0.072 0.928 21 H 0.102 0.898 22 H 0.088 0.912 23 H 0.056 0.944 24 H 0.070 0.930 25 H 0.082 0.918 26 H 0.093 0.907 27 H 0.101 0.899 28 H 0.078 0.922 29 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -4.832 -1.099 6.276 7.997 hybrid contribution 0.766 0.545 0.524 1.076 sum -4.066 -0.553 6.800 7.942 Atomic orbital electron populations 1.21747 0.93029 1.01620 1.02948 1.21060 0.97349 1.02177 0.88237 0.86187 1.20995 1.01202 0.95424 0.91702 1.18786 0.93019 0.94610 0.89059 1.20404 0.99405 0.89977 1.43774 0.92196 1.24989 0.97156 0.96900 0.94143 1.70012 1.06408 1.33187 1.41518 0.86780 0.77825 0.85666 0.78471 1.20178 1.21335 1.20210 1.23070 0.91776 1.02112 1.08278 1.22505 0.99086 0.98105 0.99464 1.24362 0.76458 0.82388 0.84632 1.90659 1.36387 1.26790 1.87245 1.84618 1.72489 1.59166 1.17043 0.93433 0.92796 0.89824 0.91173 0.94366 0.92969 0.91820 0.90676 0.89928 0.92163 0.74531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 8.66 37.16 0.32 -1.92 15 2 C -0.07 -1.34 2.67 -91.77 -0.24 -1.58 15 3 H 0.12 2.45 7.26 -51.93 -0.38 2.07 15 4 C -0.06 -1.24 3.99 -26.73 -0.11 -1.35 15 5 C 0.05 1.08 1.00 -155.66 -0.16 0.93 15 6 C -0.50 -12.90 7.68 -34.44 -0.26 -13.17 15 7 H 0.06 1.52 7.82 -52.48 -0.41 1.11 15 8 C 0.07 1.92 5.43 -17.82 -0.10 1.82 15 9 N -0.88 -24.59 12.67 55.43 0.70 -23.89 15 10 Si 0.89 20.62 29.54 -169.99 -5.02 15.60 15 11 H -0.28 -6.33 7.11 56.52 0.40 -5.93 15 12 H -0.29 -6.75 7.11 56.52 0.40 -6.34 15 13 H -0.28 -6.40 7.11 56.52 0.40 -5.99 15 14 C -0.22 -4.56 8.31 -26.69 -0.22 -4.78 15 15 C -0.15 -3.65 9.20 -26.70 -0.25 -3.90 15 16 C 0.48 8.75 7.63 36.01 0.27 9.02 15 17 O -0.52 -11.03 16.69 -18.75 -0.31 -11.34 15 18 O -0.52 -7.50 13.30 -39.26 -0.52 -8.02 15 19 H 0.05 0.74 8.14 -51.93 -0.42 0.32 15 20 H 0.05 0.78 8.08 -51.93 -0.42 0.36 15 21 H 0.08 1.44 6.35 -51.93 -0.33 1.11 15 22 H 0.07 1.78 7.97 -51.93 -0.41 1.37 15 23 H 0.04 0.82 8.09 -51.93 -0.42 0.40 15 24 H 0.26 7.06 8.32 -40.82 -0.34 6.72 15 25 H 0.06 1.22 8.14 -51.93 -0.42 0.80 15 26 H 0.07 1.57 8.14 -51.93 -0.42 1.15 15 27 H 0.08 2.10 8.14 -51.93 -0.42 1.68 15 28 H 0.06 1.37 8.14 -51.93 -0.42 0.95 15 29 H 0.40 3.80 9.10 45.56 0.41 4.21 15 LS Contribution 251.78 15.07 3.79 3.79 Total: -1.00 -29.50 251.78 -5.30 -34.81 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -3.20 Total: 3.98 kcal Atomic # 6 Polarization: -14.19 SS G_CDS: -0.74 Total: -14.93 kcal Atomic # 7 Polarization: -24.59 SS G_CDS: 0.70 Total: -23.89 kcal Atomic # 8 Polarization: -18.52 SS G_CDS: -0.84 Total: -19.36 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -29.50 -5.30 -34.81 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691696020.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.484 kcal (2) G-P(sol) polarization free energy of solvation -29.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds