Wall clock time and date at job start Mon Mar 30 2020 02:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47495 * 2 1 4 4 C 1.53002 * 109.47126 * 239.99246 * 2 1 3 5 5 C 1.53001 * 109.46897 * 64.57192 * 4 2 1 6 6 C 1.50701 * 115.54784 * 54.66838 * 5 4 2 7 7 H 1.08004 * 120.00296 * 264.75894 * 6 5 4 8 8 C 1.37877 * 120.00011 * 84.76265 * 6 5 4 9 9 N 1.31514 * 120.00008 * 4.18313 * 8 6 5 10 10 Si 1.86805 * 119.99875 * 184.18770 * 8 6 5 11 11 H 1.48498 * 109.47374 * 59.99639 * 10 8 6 12 12 H 1.48498 * 109.46953 * 179.97438 * 10 8 6 13 13 H 1.48502 * 109.47209 * 299.99579 * 10 8 6 14 14 C 1.53000 * 117.50190 * 268.99928 * 5 4 2 15 15 C 1.52994 * 117.49784 * 200.33740 * 5 4 2 16 16 C 1.50701 * 109.46914 * 119.99793 * 2 1 3 17 17 O 1.20825 * 120.00137 * 119.99687 * 16 2 1 18 18 O 1.34231 * 119.99826 * 299.99677 * 16 2 1 19 19 H 1.08994 * 109.47442 * 178.62236 * 1 2 3 20 20 H 1.09001 * 109.47363 * 298.62892 * 1 2 3 21 21 H 1.08998 * 109.47010 * 58.62002 * 1 2 3 22 22 H 1.09004 * 109.46928 * 184.57131 * 4 2 1 23 23 H 1.09000 * 109.47338 * 304.57266 * 4 2 1 24 24 H 0.97003 * 119.99520 * 185.01452 * 9 8 6 25 25 H 1.09006 * 117.49445 * 359.97438 * 14 5 4 26 26 H 1.08998 * 117.50001 * 145.01693 * 14 5 4 27 27 H 1.09005 * 117.49705 * 214.97920 * 15 5 4 28 28 H 1.08995 * 117.50353 * 0.02562 * 15 5 4 29 29 H 0.96707 * 117.00031 * 180.02562 * 18 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 1.6260 0.0630 -2.4958 6 6 2.0414 1.5114 -2.5200 7 1 1.3534 2.2762 -2.1908 8 6 3.2998 1.8604 -2.9625 9 7 4.1077 0.9393 -3.4404 10 14 3.8571 3.6416 -2.8830 11 1 3.8311 4.1060 -1.4728 12 1 5.2393 3.7519 -3.4146 13 1 2.9442 4.4828 -3.6981 14 6 0.2901 -0.2997 -3.1476 15 6 1.6049 -0.6882 -3.8285 16 6 2.0322 -0.7104 1.2305 17 8 2.7268 -1.6928 1.1197 18 8 1.7080 -0.2517 2.4496 19 1 -0.3634 -1.0273 -0.0247 20 1 -0.3634 0.4924 0.9020 21 1 -0.3633 0.5351 -0.8773 22 1 3.1269 -0.7929 -1.2091 23 1 1.6113 -1.7227 -1.2910 24 1 5.0176 1.1712 -3.6837 25 1 -0.2937 -1.0976 -2.6883 26 1 -0.2881 0.5092 -3.5941 27 1 1.8910 -0.1347 -4.7228 28 1 1.8854 -1.7414 -3.8171 29 1 2.0540 -0.7404 3.2090 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691696020.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:51 Heat of formation + Delta-G solvation = -105.605044 kcal Electronic energy + Delta-G solvation = -12973.802460 eV Core-core repulsion = 10668.321929 eV Total energy + Delta-G solvation = -2305.480531 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.32091 -38.78100 -37.02433 -34.62926 -33.86084 -28.34580 -27.24879 -25.48332 -22.78933 -21.66624 -20.66926 -18.93986 -17.68978 -17.45306 -16.71072 -16.49959 -15.54136 -15.03091 -14.75168 -14.23654 -13.48185 -13.27541 -13.17786 -12.83106 -12.75250 -12.49987 -12.36624 -12.09129 -11.95866 -11.78578 -11.47086 -11.04939 -10.82585 -10.27888 -9.79323 -8.05016 -6.17366 1.28444 1.45666 1.46219 1.52976 2.24145 2.46220 3.23993 3.55352 4.03893 4.18361 4.30970 4.54803 4.65720 4.75190 4.84784 5.00080 5.06884 5.16298 5.22506 5.36616 5.41027 5.48317 5.64646 5.72833 5.77762 5.90207 6.46912 6.92219 7.08668 7.51322 9.02740 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.030756 B = 0.013118 C = 0.011093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.185082 B = 2134.020824 C = 2523.592673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.070 4.070 3 H 0.107 0.893 4 C -0.045 4.045 5 C 0.025 3.975 6 C -0.501 4.501 7 H 0.064 0.936 8 C 0.021 3.979 9 N -0.910 5.910 10 Si 0.944 3.056 11 H -0.268 1.268 12 H -0.293 1.293 13 H -0.271 1.271 14 C -0.180 4.180 15 C -0.172 4.172 16 C 0.488 3.512 17 O -0.557 6.557 18 O -0.506 6.506 19 H 0.058 0.942 20 H 0.077 0.923 21 H 0.076 0.924 22 H 0.028 0.972 23 H 0.043 0.957 24 H 0.257 0.743 25 H 0.092 0.908 26 H 0.080 0.920 27 H 0.056 0.944 28 H 0.063 0.937 29 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.580 -0.417 8.137 10.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.089 4.089 3 H 0.125 0.875 4 C -0.083 4.083 5 C 0.024 3.976 6 C -0.538 4.538 7 H 0.082 0.918 8 C -0.179 4.179 9 N -0.548 5.548 10 Si 0.769 3.231 11 H -0.192 1.192 12 H -0.219 1.219 13 H -0.196 1.196 14 C -0.217 4.217 15 C -0.210 4.210 16 C 0.333 3.667 17 O -0.448 6.448 18 O -0.319 6.319 19 H 0.077 0.923 20 H 0.096 0.904 21 H 0.095 0.905 22 H 0.047 0.953 23 H 0.061 0.939 24 H 0.066 0.934 25 H 0.110 0.890 26 H 0.098 0.902 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges -6.394 -0.476 7.643 9.977 hybrid contribution 1.213 0.345 0.161 1.271 sum -5.182 -0.131 7.804 9.368 Atomic orbital electron populations 1.21698 0.90379 1.02583 1.03864 1.20918 0.99484 1.00851 0.87630 0.87488 1.20777 0.98596 0.95960 0.92969 1.18883 0.95320 0.93925 0.89436 1.20736 0.99318 0.91261 1.42521 0.91826 1.25709 0.97555 1.00380 0.94240 1.70149 1.06494 1.35041 1.43156 0.85841 0.77023 0.81425 0.78764 1.19249 1.21877 1.19593 1.23055 0.90535 1.02380 1.05685 1.22422 1.01881 0.97961 0.98710 1.23998 0.75641 0.81548 0.85524 1.90660 1.37883 1.28346 1.87910 1.84529 1.71864 1.58916 1.16635 0.92313 0.90386 0.90504 0.95312 0.93875 0.93447 0.88987 0.90154 0.92530 0.91868 0.71620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.81 8.66 71.98 0.62 -3.19 15 2 C -0.07 -2.59 2.67 -11.54 -0.03 -2.62 15 3 H 0.11 4.26 7.26 -2.39 -0.02 4.24 15 4 C -0.04 -2.01 3.99 30.60 0.12 -1.89 15 5 C 0.02 1.16 1.00 -52.93 -0.05 1.11 15 6 C -0.50 -25.78 7.68 25.60 0.20 -25.59 15 7 H 0.06 3.16 7.82 -2.91 -0.02 3.14 15 8 C 0.02 1.13 5.43 84.65 0.46 1.59 15 9 N -0.91 -52.42 12.67 21.45 0.27 -52.15 15 10 Si 0.94 42.38 29.54 68.60 2.03 44.41 15 11 H -0.27 -11.54 7.11 99.48 0.71 -10.83 15 12 H -0.29 -13.29 7.11 99.48 0.71 -12.58 15 13 H -0.27 -11.81 7.11 99.48 0.71 -11.11 15 14 C -0.18 -7.26 8.31 30.62 0.25 -7.01 15 15 C -0.17 -8.19 9.20 30.62 0.28 -7.91 15 16 C 0.49 16.98 7.63 71.24 0.54 17.53 15 17 O -0.56 -23.04 16.69 21.97 0.37 -22.68 15 18 O -0.51 -12.92 13.30 -51.43 -0.68 -13.60 15 19 H 0.06 1.62 8.14 -2.39 -0.02 1.60 15 20 H 0.08 1.95 8.08 -2.39 -0.02 1.93 15 21 H 0.08 2.40 6.35 -2.39 -0.02 2.39 15 22 H 0.03 1.49 7.97 -2.38 -0.02 1.47 15 23 H 0.04 1.83 8.09 -2.39 -0.02 1.81 15 24 H 0.26 14.31 8.32 -92.71 -0.77 13.54 15 25 H 0.09 3.21 8.14 -2.38 -0.02 3.19 15 26 H 0.08 3.17 8.14 -2.39 -0.02 3.15 15 27 H 0.06 2.95 8.14 -2.38 -0.02 2.93 15 28 H 0.06 2.90 8.14 -2.39 -0.02 2.88 15 29 H 0.42 6.59 9.10 -74.05 -0.67 5.92 15 Total: -1.00 -63.17 251.78 4.84 -58.33 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: 0.47 Total: 13.67 kcal Atomic # 6 Polarization: -30.37 SS G_CDS: 2.40 Total: -27.97 kcal Atomic # 7 Polarization: -52.42 SS G_CDS: 0.27 Total: -52.15 kcal Atomic # 8 Polarization: -35.96 SS G_CDS: -0.32 Total: -36.28 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Total: -63.17 4.84 -58.33 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691696020.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.278 kcal (2) G-P(sol) polarization free energy of solvation -63.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds