Wall clock time and date at job start Mon Mar 30 2020 02:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46917 * 2 1 4 4 C 1.53006 * 109.47060 * 119.99919 * 2 1 3 5 5 C 1.52994 * 109.46872 * 294.26116 * 4 2 1 6 6 C 1.50699 * 115.54995 * 304.94514 * 5 4 2 7 7 H 1.08001 * 119.99816 * 99.46930 * 6 5 4 8 8 C 1.37869 * 120.00439 * 279.46628 * 6 5 4 9 9 N 1.31511 * 120.00258 * 5.39347 * 8 6 5 10 10 Si 1.86807 * 120.00254 * 185.39025 * 8 6 5 11 11 H 1.48500 * 109.47411 * 180.02562 * 10 8 6 12 12 H 1.48504 * 109.47140 * 300.00389 * 10 8 6 13 13 H 1.48501 * 109.47146 * 60.00045 * 10 8 6 14 14 C 1.52996 * 117.52270 * 90.65267 * 5 4 2 15 15 C 1.53003 * 60.00184 * 107.47785 * 14 5 4 16 16 C 1.50699 * 109.47078 * 239.99615 * 2 1 3 17 17 O 1.20825 * 120.00195 * 240.00200 * 16 2 1 18 18 O 1.34228 * 119.99776 * 60.00254 * 16 2 1 19 19 H 1.08996 * 109.47412 * 185.87146 * 1 2 3 20 20 H 1.09005 * 109.47030 * 305.87069 * 1 2 3 21 21 H 1.09005 * 109.47210 * 65.86600 * 1 2 3 22 22 H 1.08997 * 109.47151 * 174.25746 * 4 2 1 23 23 H 1.09000 * 109.46852 * 54.25909 * 4 2 1 24 24 H 0.97004 * 120.00379 * 174.98867 * 9 8 6 25 25 H 1.08999 * 117.50263 * 214.96548 * 14 5 4 26 26 H 1.09009 * 117.49887 * 359.97438 * 14 5 4 27 27 H 1.08994 * 117.49900 * 252.51190 * 15 14 5 28 28 H 1.08999 * 117.49714 * 107.48941 * 15 14 5 29 29 H 0.96699 * 117.00106 * 179.97438 * 18 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6512 0.0785 2.4943 6 6 2.0986 1.5174 2.5084 7 1 1.4042 2.3015 2.2447 8 6 3.3943 1.8331 2.8580 9 7 4.2686 0.8752 3.0760 10 14 3.9083 3.6216 3.0220 11 1 5.3416 3.6918 3.4039 12 1 3.7076 4.3153 1.7244 13 1 3.0842 4.2795 4.0676 14 6 0.3122 -0.2515 3.1568 15 6 1.6218 -0.6653 3.8310 16 6 2.0323 -0.7105 -1.2304 17 8 2.7269 -1.6929 -1.1195 18 8 1.7081 -0.2519 -2.4495 19 1 -0.3634 -1.0222 0.1051 20 1 -0.3633 0.6022 0.8328 21 1 -0.3634 0.4202 -0.9379 22 1 3.1251 -0.8112 1.1994 23 1 1.5951 -1.7149 1.3022 24 1 5.1969 1.0962 3.2505 25 1 -0.2452 0.5722 3.6030 26 1 -0.2924 -1.0383 2.7055 27 1 1.8790 -1.7244 3.8234 28 1 1.9261 -0.1138 4.7206 29 1 2.0541 -0.7407 -3.2088 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691696021.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:54 Heat of formation + Delta-G solvation = -105.675987 kcal Electronic energy + Delta-G solvation = -12981.826459 eV Core-core repulsion = 10676.342852 eV Total energy + Delta-G solvation = -2305.483607 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.31040 -38.77140 -37.01748 -34.59931 -33.91004 -28.30824 -27.24298 -25.47782 -22.81748 -21.65951 -20.66142 -18.93198 -17.69614 -17.44121 -16.70595 -16.49193 -15.55575 -15.02533 -14.73225 -14.24277 -13.43595 -13.28467 -13.14732 -12.86561 -12.75625 -12.49103 -12.36130 -12.08906 -11.95604 -11.76693 -11.49728 -11.10117 -10.70136 -10.35251 -9.80187 -8.04447 -6.16934 1.29556 1.45052 1.46665 1.52982 2.25152 2.45797 3.23819 3.54666 4.05904 4.19914 4.31904 4.54779 4.66084 4.74894 4.85591 5.00675 5.05849 5.17086 5.22248 5.34350 5.44004 5.49972 5.65392 5.69068 5.77791 5.93389 6.47045 6.92064 7.09514 7.51581 9.02935 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.031125 B = 0.013042 C = 0.011131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.369798 B = 2146.414894 C = 2514.983572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.069 4.069 3 H 0.106 0.894 4 C -0.045 4.045 5 C 0.028 3.972 6 C -0.502 4.502 7 H 0.063 0.937 8 C 0.022 3.978 9 N -0.910 5.910 10 Si 0.945 3.055 11 H -0.293 1.293 12 H -0.267 1.267 13 H -0.272 1.272 14 C -0.177 4.177 15 C -0.182 4.182 16 C 0.488 3.512 17 O -0.557 6.557 18 O -0.507 6.507 19 H 0.058 0.942 20 H 0.076 0.924 21 H 0.077 0.923 22 H 0.033 0.967 23 H 0.039 0.961 24 H 0.257 0.743 25 H 0.082 0.918 26 H 0.092 0.908 27 H 0.064 0.936 28 H 0.056 0.944 29 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.927 -0.231 -7.281 10.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.088 4.088 3 H 0.124 0.876 4 C -0.083 4.083 5 C 0.028 3.972 6 C -0.540 4.540 7 H 0.081 0.919 8 C -0.178 4.178 9 N -0.548 5.548 10 Si 0.771 3.229 11 H -0.219 1.219 12 H -0.192 1.192 13 H -0.197 1.197 14 C -0.214 4.214 15 C -0.220 4.220 16 C 0.332 3.668 17 O -0.448 6.448 18 O -0.320 6.320 19 H 0.077 0.923 20 H 0.095 0.905 21 H 0.096 0.904 22 H 0.052 0.948 23 H 0.058 0.942 24 H 0.066 0.934 25 H 0.100 0.900 26 H 0.111 0.889 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges -6.724 -0.307 -6.812 9.577 hybrid contribution 1.202 0.340 -0.087 1.252 sum -5.522 0.033 -6.900 8.837 Atomic orbital electron populations 1.21697 0.90378 1.02665 1.03687 1.20916 0.99396 1.00813 0.87702 0.87619 1.20761 0.99040 0.95608 0.92889 1.18862 0.95099 0.93977 0.89245 1.20720 0.96326 0.91199 1.45734 0.91862 1.25704 0.97146 1.00261 0.94676 1.70114 1.02679 1.33403 1.48613 0.85821 0.76754 0.81393 0.78942 1.21856 1.19212 1.19713 1.23025 0.90477 1.02371 1.05563 1.22512 1.02600 0.98102 0.98797 1.24020 0.75653 0.81552 0.85528 1.90658 1.37859 1.28388 1.87903 1.84524 1.71878 1.58937 1.16639 0.92308 0.90540 0.90430 0.94836 0.94183 0.93397 0.89978 0.88950 0.91707 0.92546 0.71657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.82 8.57 71.98 0.62 -3.20 15 2 C -0.07 -2.62 2.68 -11.54 -0.03 -2.65 15 3 H 0.11 4.32 7.22 -2.39 -0.02 4.30 15 4 C -0.04 -2.04 4.00 30.59 0.12 -1.91 15 5 C 0.03 1.34 0.90 -52.93 -0.05 1.30 15 6 C -0.50 -25.84 7.65 25.60 0.20 -25.65 15 7 H 0.06 3.15 7.82 -2.91 -0.02 3.12 15 8 C 0.02 1.19 5.42 84.65 0.46 1.65 15 9 N -0.91 -52.38 13.10 21.44 0.28 -52.10 15 10 Si 0.94 42.41 29.54 68.60 2.03 44.44 15 11 H -0.29 -13.26 7.11 99.48 0.71 -12.55 15 12 H -0.27 -11.49 7.11 99.48 0.71 -10.78 15 13 H -0.27 -11.91 7.11 99.48 0.71 -11.20 15 14 C -0.18 -7.10 8.43 30.59 0.26 -6.84 15 15 C -0.18 -8.57 9.70 30.60 0.30 -8.27 15 16 C 0.49 17.38 7.63 71.24 0.54 17.92 15 17 O -0.56 -23.57 16.66 21.97 0.37 -23.21 15 18 O -0.51 -13.27 13.22 -51.39 -0.68 -13.95 15 19 H 0.06 1.64 8.14 -2.39 -0.02 1.62 15 20 H 0.08 2.38 6.68 -2.38 -0.02 2.36 15 21 H 0.08 1.96 7.97 -2.38 -0.02 1.94 15 22 H 0.03 1.78 7.93 -2.39 -0.02 1.76 15 23 H 0.04 1.72 8.09 -2.39 -0.02 1.70 15 24 H 0.26 14.33 8.32 -92.71 -0.77 13.56 15 25 H 0.08 3.18 8.14 -2.39 -0.02 3.16 15 26 H 0.09 3.20 8.14 -2.38 -0.02 3.18 15 27 H 0.06 2.94 8.14 -2.39 -0.02 2.92 15 28 H 0.06 2.85 8.14 -2.39 -0.02 2.83 15 29 H 0.42 6.86 9.10 -74.06 -0.67 6.18 15 Total: -1.00 -63.23 252.65 4.87 -58.36 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: 0.47 Total: 14.12 kcal Atomic # 6 Polarization: -30.07 SS G_CDS: 2.41 Total: -27.66 kcal Atomic # 7 Polarization: -52.38 SS G_CDS: 0.28 Total: -52.10 kcal Atomic # 8 Polarization: -36.84 SS G_CDS: -0.31 Total: -37.15 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.44 kcal Total: -63.23 4.87 -58.36 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691696021.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.320 kcal (2) G-P(sol) polarization free energy of solvation -63.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds