Wall clock time and date at job start Mon Mar 30 2020 02:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.47397 * 2 1 4 4 H 1.09002 * 109.47035 * 305.26765 * 3 2 1 5 5 C 1.50698 * 109.46907 * 65.25914 * 3 2 1 6 6 H 1.08008 * 119.99698 * 63.10914 * 5 3 2 7 7 C 1.37879 * 120.00363 * 243.10322 * 5 3 2 8 8 N 1.31512 * 119.99789 * 5.19320 * 7 5 3 9 9 Si 1.86800 * 119.99951 * 185.18950 * 7 5 3 10 10 H 1.48500 * 109.47155 * 0.02562 * 9 7 5 11 11 H 1.48495 * 109.46966 * 120.00522 * 9 7 5 12 12 H 1.48501 * 109.47086 * 240.00350 * 9 7 5 13 13 C 1.52998 * 109.47517 * 185.26221 * 3 2 1 14 14 C 1.50699 * 115.54657 * 66.11739 * 13 3 2 15 15 O 1.20828 * 120.00400 * 5.85884 * 14 13 3 16 16 O 1.34237 * 119.99904 * 185.86237 * 14 13 3 17 17 C 1.52991 * 117.50106 * 280.44628 * 13 3 2 18 18 C 1.52997 * 117.50029 * 211.78528 * 13 3 2 19 19 H 1.08998 * 109.47327 * 64.17672 * 1 2 3 20 20 H 1.09002 * 109.47137 * 184.17431 * 1 2 3 21 21 H 1.09000 * 109.47337 * 304.17409 * 1 2 3 22 22 H 1.09005 * 109.47175 * 240.00300 * 2 1 3 23 23 H 1.08994 * 109.47613 * 120.00473 * 2 1 3 24 24 H 0.97002 * 119.99619 * 179.97438 * 8 7 5 25 25 H 0.96698 * 116.99776 * 180.02562 * 16 14 13 26 26 H 1.09001 * 117.49487 * 0.02562 * 17 13 3 27 27 H 1.09006 * 117.50189 * 145.01617 * 17 13 3 28 28 H 1.09002 * 117.50201 * 214.97862 * 18 13 3 29 29 H 1.09003 * 117.49724 * 359.97438 * 18 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6017 1.9828 -0.8391 5 6 1.6468 2.1143 1.2904 6 1 2.0317 1.7460 2.2300 7 6 0.7960 3.1990 1.2716 8 7 0.2468 3.5845 0.1405 9 14 0.4232 4.1212 2.8528 10 1 1.1612 3.4930 3.9779 11 1 0.8479 5.5371 2.7119 12 1 -1.0356 4.0667 3.1254 13 6 3.5642 1.4445 -0.1323 14 6 4.1035 0.9332 -1.4433 15 8 3.3447 0.6568 -2.3421 16 8 5.4268 0.7848 -1.6126 17 6 4.3831 1.1588 1.1280 18 6 4.3314 2.5767 0.5537 19 1 -0.3634 0.4476 -0.9250 20 1 -0.3633 -1.0250 0.0748 21 1 -0.3634 0.5772 0.8502 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5139 0.8899 24 1 -0.3521 4.3474 0.1274 25 1 5.7252 0.4540 -2.4709 26 1 3.8359 0.9688 2.0514 27 1 5.3122 0.6011 1.0090 28 1 5.2264 2.9514 0.0570 29 1 3.7501 3.3203 1.0990 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691809029.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:21 Heat of formation + Delta-G solvation = -102.165546 kcal Electronic energy + Delta-G solvation = -13165.614638 eV Core-core repulsion = 10860.283255 eV Total energy + Delta-G solvation = -2305.331383 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.38627 -38.57785 -37.02923 -35.11979 -33.46297 -28.73087 -26.83398 -24.86006 -23.25848 -22.06873 -20.44605 -18.76286 -18.22030 -17.20930 -16.50185 -16.39018 -15.64714 -15.12814 -14.41280 -14.25609 -13.76896 -13.47106 -12.86667 -12.73175 -12.56439 -12.39912 -12.25031 -12.06540 -11.78834 -11.69603 -11.28001 -10.94791 -10.69722 -10.55477 -10.30725 -8.05059 -6.12783 1.24749 1.43889 1.48191 1.57620 2.23557 2.50326 3.16987 3.27706 3.98712 4.10647 4.32206 4.55655 4.66059 4.79206 4.88820 4.90159 5.18993 5.29158 5.34868 5.40528 5.55875 5.62982 5.67932 5.77004 5.81038 5.95800 6.42145 7.04175 7.16732 7.52215 9.04244 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.037476 B = 0.013630 C = 0.011678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.957804 B = 2053.724126 C = 2397.025183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.102 4.102 3 C 0.075 3.925 4 H 0.028 0.972 5 C -0.499 4.499 6 H 0.064 0.936 7 C 0.021 3.979 8 N -0.923 5.923 9 Si 0.945 3.055 10 H -0.259 1.259 11 H -0.284 1.284 12 H -0.289 1.289 13 C -0.154 4.154 14 C 0.514 3.486 15 O -0.552 6.552 16 O -0.507 6.507 17 C -0.123 4.123 18 C -0.131 4.131 19 H 0.022 0.978 20 H 0.052 0.948 21 H 0.045 0.955 22 H 0.028 0.972 23 H 0.051 0.949 24 H 0.258 0.742 25 H 0.422 0.578 26 H 0.102 0.898 27 H 0.114 0.886 28 H 0.104 0.896 29 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.582 -4.029 1.592 9.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.140 4.140 3 C 0.056 3.944 4 H 0.047 0.953 5 C -0.537 4.537 6 H 0.082 0.918 7 C -0.178 4.178 8 N -0.562 5.562 9 Si 0.771 3.229 10 H -0.183 1.183 11 H -0.210 1.210 12 H -0.216 1.216 13 C -0.155 4.155 14 C 0.359 3.641 15 O -0.444 6.444 16 O -0.321 6.321 17 C -0.160 4.160 18 C -0.168 4.168 19 H 0.041 0.959 20 H 0.071 0.929 21 H 0.064 0.936 22 H 0.047 0.953 23 H 0.070 0.930 24 H 0.067 0.933 25 H 0.283 0.717 26 H 0.121 0.879 27 H 0.132 0.868 28 H 0.122 0.878 29 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 8.139 -3.829 1.658 9.146 hybrid contribution -0.488 0.500 -0.301 0.761 sum 7.651 -3.328 1.357 8.453 Atomic orbital electron populations 1.21411 0.96533 0.99311 1.00392 1.21464 0.95811 0.98210 0.98482 1.18267 0.85667 0.92893 0.97531 0.95318 1.21177 1.27041 1.12847 0.92601 0.91812 1.25665 0.95731 0.98125 0.98313 1.70105 1.31487 1.27179 1.27465 0.85709 0.77609 0.78631 0.80953 1.18251 1.21038 1.21565 1.21826 0.97565 1.07855 0.88268 1.22851 0.79789 0.72586 0.88856 1.90630 1.59917 1.49189 1.44620 1.84480 1.24326 1.79178 1.44094 1.22972 0.99853 0.98358 0.94812 1.22958 0.99835 0.92173 1.01865 0.95907 0.92859 0.93567 0.95287 0.93041 0.93264 0.71663 0.87934 0.86779 0.87771 0.88479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.38 9.79 71.98 0.71 -4.67 15 2 C -0.10 -4.64 5.29 30.59 0.16 -4.48 15 3 C 0.08 3.73 1.80 -11.54 -0.02 3.71 15 4 H 0.03 1.70 6.92 -2.39 -0.02 1.69 15 5 C -0.50 -25.21 4.97 25.60 0.13 -25.08 15 6 H 0.06 3.10 6.57 -2.91 -0.02 3.08 15 7 C 0.02 1.09 5.45 84.66 0.46 1.55 15 8 N -0.92 -53.24 12.62 21.45 0.27 -52.97 15 9 Si 0.94 41.80 29.54 68.60 2.03 43.82 15 10 H -0.26 -10.79 7.11 99.48 0.71 -10.08 15 11 H -0.28 -12.51 7.11 99.48 0.71 -11.81 15 12 H -0.29 -12.93 7.11 99.48 0.71 -12.23 15 13 C -0.15 -6.37 2.05 -52.93 -0.11 -6.48 15 14 C 0.51 20.11 7.69 71.24 0.55 20.66 15 15 O -0.55 -25.43 16.01 21.96 0.35 -25.08 15 16 O -0.51 -14.28 12.86 -51.49 -0.66 -14.94 15 17 C -0.12 -4.15 9.40 30.61 0.29 -3.86 15 18 C -0.13 -4.85 9.42 30.62 0.29 -4.56 15 19 H 0.02 1.07 8.14 -2.39 -0.02 1.05 15 20 H 0.05 2.01 8.14 -2.39 -0.02 1.99 15 21 H 0.05 2.22 7.26 -2.39 -0.02 2.21 15 22 H 0.03 1.32 6.68 -2.38 -0.02 1.30 15 23 H 0.05 2.16 8.14 -2.39 -0.02 2.14 15 24 H 0.26 14.28 8.31 -92.71 -0.77 13.51 15 25 H 0.42 7.61 9.10 -74.06 -0.67 6.93 15 26 H 0.10 3.54 6.72 -2.39 -0.02 3.53 15 27 H 0.11 3.18 7.95 -2.38 -0.02 3.16 15 28 H 0.10 3.30 8.14 -2.39 -0.02 3.28 15 29 H 0.10 4.01 6.98 -2.39 -0.02 3.99 15 Total: -1.00 -63.56 247.28 4.91 -58.64 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: 0.48 Total: 13.74 kcal Atomic # 6 Polarization: -25.67 SS G_CDS: 2.45 Total: -23.22 kcal Atomic # 7 Polarization: -53.24 SS G_CDS: 0.27 Total: -52.97 kcal Atomic # 8 Polarization: -39.71 SS G_CDS: -0.31 Total: -40.02 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.82 kcal Total: -63.56 4.91 -58.64 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691809029.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.522 kcal (2) G-P(sol) polarization free energy of solvation -63.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds