Wall clock time and date at job start Mon Mar 30 2020 02:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86805 * 120.00010 * 2 1 4 4 H 1.48500 * 109.47244 * 270.00262 * 3 2 1 5 5 H 1.48498 * 109.46740 * 30.00107 * 3 2 1 6 6 H 1.48493 * 109.46848 * 150.00091 * 3 2 1 7 7 C 1.37877 * 120.00138 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00188 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99981 * 0.02562 * 7 2 1 10 10 H 1.09006 * 109.48277 * 59.97721 * 9 7 2 11 11 C 1.53046 * 109.47961 * 180.02562 * 9 7 2 12 12 C 1.53151 * 109.41245 * 179.39113 * 11 9 7 13 13 C 1.53341 * 108.95947 * 301.29254 * 12 11 9 14 14 C 1.52676 * 108.92523 * 54.70820 * 13 12 11 15 15 C 1.53535 * 113.60531 * 174.58748 * 14 13 12 16 16 O 1.44272 * 85.37155 * 223.51692 * 15 14 13 17 17 C 1.44266 * 93.41197 * 23.86085 * 16 15 14 18 18 O 1.42419 * 113.22041 * 306.37527 * 14 13 12 19 19 H 0.96999 * 120.00298 * 359.97438 * 1 2 3 20 20 H 1.09003 * 109.47782 * 299.37128 * 11 9 7 21 21 H 1.09000 * 109.48168 * 59.40862 * 11 9 7 22 22 H 1.09004 * 109.55934 * 61.13521 * 12 11 9 23 23 H 1.09004 * 109.55727 * 181.34388 * 12 11 9 24 24 H 1.09000 * 109.56086 * 174.54850 * 13 12 11 25 25 H 1.09000 * 109.55831 * 294.87356 * 13 12 11 26 26 H 1.08999 * 113.89832 * 337.62754 * 15 14 13 27 27 H 1.09004 * 113.88590 * 109.41040 * 15 14 13 28 28 H 1.09005 * 113.89184 * 222.03642 * 17 16 15 29 29 H 1.09007 * 114.01124 * 90.26821 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 1 0.6244 -2.5563 -0.8917 11 6 2.2455 -3.6626 -0.0015 12 6 1.4783 -4.9880 0.0127 13 6 0.5858 -5.0337 1.2588 14 6 -0.3034 -3.7928 1.2769 15 6 -1.3363 -3.7931 2.4129 16 8 -2.2641 -3.3251 1.4121 17 6 -1.5021 -3.8825 0.3213 18 8 0.4283 -2.5760 1.1661 19 1 -0.4850 0.8400 0.0004 20 1 2.8655 -3.6110 -0.8965 21 1 2.8785 -3.5995 0.8836 22 1 0.8598 -5.0612 -0.8819 23 1 2.1843 -5.8181 0.0370 24 1 -0.0362 -5.9283 1.2295 25 1 1.2086 -5.0495 2.1533 26 1 -1.5674 -4.7857 2.7994 27 1 -1.1294 -3.0653 3.1977 28 1 -1.4260 -3.2254 -0.5451 29 1 -1.7829 -4.9028 0.0598 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693639083.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:00 Heat of formation + Delta-G solvation = -85.252822 kcal Electronic energy + Delta-G solvation = -13430.505597 eV Core-core repulsion = 11125.907605 eV Total energy + Delta-G solvation = -2304.597992 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.76505 -38.45805 -34.80741 -34.19679 -31.90260 -28.43960 -27.52704 -26.42710 -23.83895 -22.14390 -19.99191 -18.74351 -17.55952 -17.05037 -16.57380 -16.43785 -15.98736 -15.16275 -14.88125 -14.63256 -14.04073 -13.65900 -13.24493 -12.95004 -12.83414 -12.52857 -12.28741 -12.05861 -11.79063 -11.50998 -11.10873 -10.96952 -10.64195 -10.52226 -9.63760 -8.15935 -6.37961 1.39003 1.40928 1.51774 2.38927 2.69953 2.97690 3.31732 3.73546 3.98860 4.16287 4.22093 4.32411 4.42660 4.46910 4.67020 4.73572 4.88962 4.93788 5.03164 5.14335 5.22801 5.28193 5.30222 5.30379 5.55917 5.76532 6.18309 6.64679 7.16693 7.38846 8.90646 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.042292 B = 0.013425 C = 0.011063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.901478 B = 2085.117041 C = 2530.414909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.023 3.977 3 Si 0.962 3.038 4 H -0.268 1.268 5 H -0.285 1.285 6 H -0.264 1.264 7 C -0.556 4.556 8 H 0.066 0.934 9 C 0.216 3.784 10 H -0.017 1.017 11 C -0.139 4.139 12 C -0.115 4.115 13 C -0.133 4.133 14 C 0.034 3.966 15 C 0.049 3.951 16 O -0.408 6.408 17 C 0.015 3.985 18 O -0.364 6.364 19 H 0.260 0.740 20 H 0.062 0.938 21 H 0.053 0.947 22 H 0.058 0.942 23 H 0.088 0.912 24 H 0.102 0.898 25 H 0.073 0.927 26 H 0.130 0.870 27 H 0.078 0.922 28 H 0.057 0.943 29 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.851 -10.394 1.850 10.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.180 4.180 3 Si 0.786 3.214 4 H -0.193 1.193 5 H -0.210 1.210 6 H -0.188 1.188 7 C -0.593 4.593 8 H 0.084 0.916 9 C 0.161 3.839 10 H 0.000 1.000 11 C -0.177 4.177 12 C -0.152 4.152 13 C -0.170 4.170 14 C -0.007 4.007 15 C -0.027 4.027 16 O -0.327 6.327 17 C -0.062 4.062 18 O -0.283 6.283 19 H 0.069 0.931 20 H 0.081 0.919 21 H 0.071 0.929 22 H 0.077 0.923 23 H 0.107 0.893 24 H 0.121 0.879 25 H 0.092 0.908 26 H 0.148 0.852 27 H 0.096 0.904 28 H 0.076 0.924 29 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 0.449 -9.989 1.991 10.196 hybrid contribution 0.323 1.066 -0.316 1.158 sum 0.773 -8.923 1.675 9.112 Atomic orbital electron populations 1.70209 1.07662 1.27346 1.47848 1.25995 0.95613 1.03188 0.93223 0.85515 0.78690 0.78560 0.78594 1.19335 1.21021 1.18818 1.21467 0.93146 0.91364 1.53359 0.91552 1.19614 0.87211 0.93503 0.83577 0.99990 1.22104 0.98749 0.95629 1.01234 1.21605 0.98770 0.97040 0.97828 1.22074 0.98823 0.96919 0.99217 1.24115 0.92447 0.88846 0.95316 1.24239 0.84851 1.01181 0.92427 1.89631 1.48387 1.76016 1.18680 1.24562 0.90606 0.99113 0.91909 1.88254 1.59779 1.34286 1.46026 0.93086 0.91885 0.92868 0.92335 0.89342 0.87941 0.90798 0.85244 0.90351 0.92418 0.86667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -55.58 12.84 21.45 0.28 -55.31 15 2 C 0.02 1.32 5.40 84.65 0.46 1.78 15 3 Si 0.96 44.92 29.54 68.60 2.03 46.94 15 4 H -0.27 -11.93 7.11 99.48 0.71 -11.23 15 5 H -0.28 -13.15 7.11 99.48 0.71 -12.44 15 6 H -0.26 -11.82 7.11 99.48 0.71 -11.11 15 7 C -0.56 -32.12 8.79 25.60 0.23 -31.89 15 8 H 0.07 3.67 7.74 -2.91 -0.02 3.65 15 9 C 0.22 11.39 2.40 29.86 0.07 11.46 15 10 H -0.02 -1.01 7.34 -2.38 -0.02 -1.02 15 11 C -0.14 -5.71 5.30 30.66 0.16 -5.55 15 12 C -0.12 -3.59 5.97 30.76 0.18 -3.41 15 13 C -0.13 -3.97 5.27 30.60 0.16 -3.81 15 14 C 0.03 1.36 1.15 -10.53 -0.01 1.35 15 15 C 0.05 1.75 8.61 72.13 0.62 2.37 15 16 O -0.41 -17.84 12.45 -138.29 -1.72 -19.57 15 17 C 0.01 0.58 8.30 72.13 0.60 1.18 15 18 O -0.36 -19.38 9.56 -138.29 -1.32 -20.70 15 19 H 0.26 15.38 8.31 -92.71 -0.77 14.60 15 20 H 0.06 2.47 8.14 -2.39 -0.02 2.45 15 21 H 0.05 2.19 8.14 -2.39 -0.02 2.17 15 22 H 0.06 1.80 8.14 -2.38 -0.02 1.78 15 23 H 0.09 2.18 8.14 -2.38 -0.02 2.16 15 24 H 0.10 2.27 8.03 -2.39 -0.02 2.25 15 25 H 0.07 2.14 8.14 -2.39 -0.02 2.12 15 26 H 0.13 3.22 8.09 -2.39 -0.02 3.20 15 27 H 0.08 2.95 8.14 -2.39 -0.02 2.93 15 28 H 0.06 2.68 7.41 -2.38 -0.02 2.66 15 29 H 0.12 3.38 8.01 -2.38 -0.02 3.37 15 Total: -1.00 -70.47 240.70 2.84 -67.62 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: 1.12 Total: 7.53 kcal Atomic # 6 Polarization: -28.99 SS G_CDS: 2.47 Total: -26.52 kcal Atomic # 7 Polarization: -55.58 SS G_CDS: 0.28 Total: -55.31 kcal Atomic # 8 Polarization: -37.22 SS G_CDS: -3.04 Total: -40.27 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.94 kcal Total: -70.47 2.84 -67.62 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693639083.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.629 kcal (2) G-P(sol) polarization free energy of solvation -70.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds