Wall clock time and date at job start Mon Mar 30 2020 02:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00282 * 2 1 4 4 H 1.48503 * 109.47407 * 89.99943 * 3 2 1 5 5 H 1.48505 * 109.47281 * 209.99699 * 3 2 1 6 6 H 1.48501 * 109.47274 * 329.99797 * 3 2 1 7 7 C 1.37884 * 119.99707 * 180.27224 * 2 1 3 8 8 H 1.08002 * 119.99701 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99783 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.47698 * 300.01201 * 9 7 2 11 11 C 1.53055 * 109.47516 * 180.02562 * 9 7 2 12 12 C 1.53159 * 109.37600 * 180.54455 * 11 9 7 13 13 C 1.53328 * 108.96270 * 58.76887 * 12 11 9 14 14 C 1.52676 * 108.97886 * 305.34293 * 13 12 11 15 15 C 1.53551 * 113.60398 * 281.61904 * 14 13 12 16 16 O 1.44275 * 85.37905 * 223.54005 * 15 14 13 17 17 C 1.44265 * 93.40792 * 23.85739 * 16 15 14 18 18 O 1.42426 * 113.26124 * 53.42340 * 14 13 12 19 19 H 0.97005 * 119.99656 * 359.72615 * 1 2 3 20 20 H 1.09006 * 109.48529 * 300.51043 * 11 9 7 21 21 H 1.09000 * 109.48980 * 60.56893 * 11 9 7 22 22 H 1.08996 * 109.56133 * 178.61539 * 12 11 9 23 23 H 1.09007 * 109.55471 * 298.92777 * 12 11 9 24 24 H 1.09007 * 109.54820 * 65.18388 * 13 12 11 25 25 H 1.08994 * 109.56017 * 185.38656 * 13 12 11 26 26 H 1.09002 * 113.88481 * 337.64787 * 15 14 13 27 27 H 1.08995 * 113.88814 * 109.42796 * 15 14 13 28 28 H 1.08994 * 113.88739 * 222.03048 * 17 16 15 29 29 H 1.09003 * 114.00864 * 90.26839 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4400 -0.7000 6 1 1.4467 2.6526 -0.7001 7 6 2.0045 -1.1941 -0.0057 8 1 3.0845 -1.1941 -0.0053 9 6 1.2509 -2.4991 -0.0125 10 1 0.6237 -2.5613 0.8769 11 6 2.2453 -3.6626 -0.0172 12 6 1.4772 -4.9875 -0.0378 13 6 0.5868 -5.0278 -1.2854 14 6 -0.3014 -3.7861 -1.3020 15 6 -1.5066 -3.8796 -0.3552 16 8 -2.2611 -3.3164 -1.4485 17 6 -1.3268 -3.7801 -2.4451 18 8 0.4300 -2.5698 -1.1819 19 1 -0.4850 0.8401 0.0040 20 1 2.8788 -3.5959 -0.9018 21 1 2.8647 -3.6153 0.8784 22 1 2.1826 -5.8179 -0.0661 23 1 0.8571 -5.0637 0.8555 24 1 1.2112 -5.0416 -2.1789 25 1 -0.0351 -5.9226 -1.2612 26 1 -1.7912 -4.9010 -0.1025 27 1 -1.4361 -3.2268 0.5148 28 1 -1.1142 -3.0488 -3.2249 29 1 -1.5540 -4.7705 -2.8394 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693639085.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:02 Heat of formation + Delta-G solvation = -63.553968 kcal Electronic energy + Delta-G solvation = -13428.258056 eV Core-core repulsion = 11124.600996 eV Total energy + Delta-G solvation = -2303.657059 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.16559 -36.72972 -32.92096 -32.37904 -30.14669 -26.58924 -25.99739 -24.69769 -22.08950 -20.51603 -18.37543 -16.68207 -15.90736 -15.35165 -15.00702 -14.49787 -14.34177 -13.57774 -13.08780 -12.95815 -12.46546 -12.02473 -11.67334 -11.14942 -10.92963 -10.79087 -10.42607 -10.39025 -10.28459 -9.73085 -9.46354 -9.22875 -8.84726 -8.49262 -7.87283 -6.01036 -4.15112 3.30683 3.38054 3.41085 4.27182 4.41542 4.67492 5.11773 5.39078 5.47575 5.53288 5.67172 5.70747 5.92097 6.03540 6.20295 6.22557 6.28391 6.43128 6.60569 6.64174 6.79167 6.80426 6.85307 6.88413 7.47305 7.88583 8.23915 8.73537 9.06817 9.55454 11.05649 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.042248 B = 0.013425 C = 0.011063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.599081 B = 2085.084562 C = 2530.414997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.078 3.922 3 Si 0.893 3.107 4 H -0.279 1.279 5 H -0.273 1.273 6 H -0.285 1.285 7 C -0.532 4.532 8 H 0.065 0.935 9 C 0.218 3.782 10 H 0.017 0.983 11 C -0.145 4.145 12 C -0.119 4.119 13 C -0.142 4.142 14 C 0.056 3.944 15 C 0.010 3.990 16 O -0.371 6.371 17 C 0.042 3.958 18 O -0.324 6.324 19 H 0.262 0.738 20 H 0.057 0.943 21 H 0.059 0.941 22 H 0.052 0.948 23 H 0.056 0.944 24 H 0.066 0.934 25 H 0.060 0.940 26 H 0.068 0.932 27 H 0.096 0.904 28 H 0.092 0.908 29 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.150 -8.547 -1.367 8.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C -0.129 4.129 3 Si 0.720 3.280 4 H -0.205 1.205 5 H -0.197 1.197 6 H -0.210 1.210 7 C -0.569 4.569 8 H 0.083 0.917 9 C 0.163 3.837 10 H 0.034 0.966 11 C -0.183 4.183 12 C -0.157 4.157 13 C -0.180 4.180 14 C 0.014 3.986 15 C -0.067 4.067 16 O -0.289 6.289 17 C -0.035 4.035 18 O -0.243 6.243 19 H 0.072 0.928 20 H 0.075 0.925 21 H 0.078 0.922 22 H 0.070 0.930 23 H 0.075 0.925 24 H 0.085 0.915 25 H 0.079 0.921 26 H 0.086 0.914 27 H 0.114 0.886 28 H 0.110 0.890 29 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.267 -8.127 -1.513 8.271 hybrid contribution 0.579 0.538 0.159 0.806 sum 0.312 -7.589 -1.354 7.715 Atomic orbital electron populations 1.70051 1.05941 1.26698 1.46152 1.25106 0.94807 0.99346 0.93661 0.86606 0.79993 0.83321 0.78107 1.20524 1.19735 1.21041 1.20971 0.92686 0.89592 1.53637 0.91697 1.19782 0.86876 0.92360 0.84685 0.96577 1.22245 0.99618 0.95119 1.01310 1.21610 0.98305 0.98437 0.97348 1.22098 0.99006 0.97673 0.99217 1.23742 0.91639 0.89102 0.94135 1.24502 0.90877 0.97760 0.93555 1.89672 1.47252 1.74695 1.17283 1.23973 0.86611 0.99114 0.93778 1.88397 1.58870 1.30542 1.46452 0.92813 0.92451 0.92230 0.92968 0.92548 0.91497 0.92112 0.91378 0.88601 0.89005 0.90512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.52 12.84 55.43 0.71 -24.81 15 2 C 0.08 2.22 5.40 -17.82 -0.10 2.12 15 3 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 15 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 15 5 H -0.27 -6.45 7.11 56.52 0.40 -6.05 15 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 15 7 C -0.53 -14.98 8.79 -34.44 -0.30 -15.28 15 8 H 0.06 1.77 7.74 -52.49 -0.41 1.36 15 9 C 0.22 5.60 2.40 -27.86 -0.07 5.54 15 10 H 0.02 0.45 7.37 -51.93 -0.38 0.07 15 11 C -0.15 -3.03 5.30 -26.62 -0.14 -3.18 15 12 C -0.12 -2.06 5.98 -26.48 -0.16 -2.21 15 13 C -0.14 -2.40 5.26 -26.73 -0.14 -2.54 15 14 C 0.06 1.15 1.15 -90.21 -0.10 1.05 15 15 C 0.01 0.21 8.31 37.39 0.31 0.52 15 16 O -0.37 -8.18 12.46 -46.42 -0.58 -8.76 15 17 C 0.04 0.79 8.61 37.39 0.32 1.11 15 18 O -0.32 -8.45 9.56 -46.42 -0.44 -8.90 15 19 H 0.26 7.44 8.31 -40.82 -0.34 7.10 15 20 H 0.06 1.21 8.14 -51.93 -0.42 0.79 15 21 H 0.06 1.19 8.14 -51.93 -0.42 0.76 15 22 H 0.05 0.77 8.14 -51.93 -0.42 0.35 15 23 H 0.06 0.95 8.14 -51.92 -0.42 0.52 15 24 H 0.07 1.10 8.14 -51.92 -0.42 0.68 15 25 H 0.06 0.86 8.03 -51.93 -0.42 0.44 15 26 H 0.07 1.11 8.01 -51.93 -0.42 0.70 15 27 H 0.10 2.13 7.44 -51.93 -0.39 1.74 15 28 H 0.09 1.75 8.14 -51.93 -0.42 1.33 15 29 H 0.08 1.13 8.08 -51.93 -0.42 0.71 15 LS Contribution 240.77 15.07 3.63 3.63 Total: -1.00 -31.15 240.77 -6.18 -37.33 By element: Atomic # 1 Polarization: 2.03 SS G_CDS: -4.10 Total: -2.07 kcal Atomic # 6 Polarization: -12.50 SS G_CDS: -0.38 Total: -12.87 kcal Atomic # 7 Polarization: -25.52 SS G_CDS: 0.71 Total: -24.81 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: -1.02 Total: -17.65 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -31.15 -6.18 -37.33 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693639085.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.226 kcal (2) G-P(sol) polarization free energy of solvation -31.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds