Wall clock time and date at job start Mon Mar 30 2020 02:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00282 * 2 1 4 4 H 1.48503 * 109.47407 * 89.99943 * 3 2 1 5 5 H 1.48505 * 109.47281 * 209.99699 * 3 2 1 6 6 H 1.48501 * 109.47274 * 329.99797 * 3 2 1 7 7 C 1.37884 * 119.99707 * 180.27224 * 2 1 3 8 8 H 1.08002 * 119.99701 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99783 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.47698 * 300.01201 * 9 7 2 11 11 C 1.53055 * 109.47516 * 180.02562 * 9 7 2 12 12 C 1.53159 * 109.37600 * 180.54455 * 11 9 7 13 13 C 1.53328 * 108.96270 * 58.76887 * 12 11 9 14 14 C 1.52676 * 108.97886 * 305.34293 * 13 12 11 15 15 C 1.53551 * 113.60398 * 281.61904 * 14 13 12 16 16 O 1.44275 * 85.37905 * 223.54005 * 15 14 13 17 17 C 1.44265 * 93.40792 * 23.85739 * 16 15 14 18 18 O 1.42426 * 113.26124 * 53.42340 * 14 13 12 19 19 H 0.97005 * 119.99656 * 359.72615 * 1 2 3 20 20 H 1.09006 * 109.48529 * 300.51043 * 11 9 7 21 21 H 1.09000 * 109.48980 * 60.56893 * 11 9 7 22 22 H 1.08996 * 109.56133 * 178.61539 * 12 11 9 23 23 H 1.09007 * 109.55471 * 298.92777 * 12 11 9 24 24 H 1.09007 * 109.54820 * 65.18388 * 13 12 11 25 25 H 1.08994 * 109.56017 * 185.38656 * 13 12 11 26 26 H 1.09002 * 113.88481 * 337.64787 * 15 14 13 27 27 H 1.08995 * 113.88814 * 109.42796 * 15 14 13 28 28 H 1.08994 * 113.88739 * 222.03048 * 17 16 15 29 29 H 1.09003 * 114.00864 * 90.26839 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4400 -0.7000 6 1 1.4467 2.6526 -0.7001 7 6 2.0045 -1.1941 -0.0057 8 1 3.0845 -1.1941 -0.0053 9 6 1.2509 -2.4991 -0.0125 10 1 0.6237 -2.5613 0.8769 11 6 2.2453 -3.6626 -0.0172 12 6 1.4772 -4.9875 -0.0378 13 6 0.5868 -5.0278 -1.2854 14 6 -0.3014 -3.7861 -1.3020 15 6 -1.5066 -3.8796 -0.3552 16 8 -2.2611 -3.3164 -1.4485 17 6 -1.3268 -3.7801 -2.4451 18 8 0.4300 -2.5698 -1.1819 19 1 -0.4850 0.8401 0.0040 20 1 2.8788 -3.5959 -0.9018 21 1 2.8647 -3.6153 0.8784 22 1 2.1826 -5.8179 -0.0661 23 1 0.8571 -5.0637 0.8555 24 1 1.2112 -5.0416 -2.1789 25 1 -0.0351 -5.9226 -1.2612 26 1 -1.7912 -4.9010 -0.1025 27 1 -1.4361 -3.2268 0.5148 28 1 -1.1142 -3.0488 -3.2249 29 1 -1.5540 -4.7705 -2.8394 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693639085.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:02 Heat of formation + Delta-G solvation = -85.304387 kcal Electronic energy + Delta-G solvation = -13429.201224 eV Core-core repulsion = 11124.600996 eV Total energy + Delta-G solvation = -2304.600228 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.76106 -38.45895 -34.80772 -34.19770 -31.90365 -28.43981 -27.52646 -26.42707 -23.83919 -22.14215 -19.99428 -18.74358 -17.55772 -17.04871 -16.57651 -16.43750 -15.98766 -15.16294 -14.88184 -14.63356 -14.04148 -13.65892 -13.24562 -12.94985 -12.83413 -12.52774 -12.28772 -12.05856 -11.79096 -11.50948 -11.10809 -10.96955 -10.64285 -10.52072 -9.63901 -8.16036 -6.37951 1.38947 1.40974 1.51771 2.38887 2.69894 2.97783 3.31763 3.73406 3.98842 4.16191 4.22098 4.32423 4.42638 4.46899 4.67097 4.73553 4.89048 4.93718 5.03150 5.14293 5.22871 5.28106 5.30271 5.30358 5.55844 5.76477 6.18343 6.64744 7.16837 7.38825 8.90578 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.042248 B = 0.013425 C = 0.011063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.599081 B = 2085.084562 C = 2530.414997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.023 3.977 3 Si 0.962 3.038 4 H -0.268 1.268 5 H -0.264 1.264 6 H -0.285 1.285 7 C -0.556 4.556 8 H 0.066 0.934 9 C 0.216 3.784 10 H -0.018 1.018 11 C -0.139 4.139 12 C -0.115 4.115 13 C -0.133 4.133 14 C 0.034 3.966 15 C 0.015 3.985 16 O -0.408 6.408 17 C 0.049 3.951 18 O -0.364 6.364 19 H 0.260 0.740 20 H 0.052 0.948 21 H 0.062 0.938 22 H 0.088 0.912 23 H 0.058 0.942 24 H 0.073 0.927 25 H 0.102 0.898 26 H 0.116 0.884 27 H 0.058 0.942 28 H 0.078 0.922 29 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.853 -10.384 -1.910 10.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.180 4.180 3 Si 0.786 3.214 4 H -0.193 1.193 5 H -0.188 1.188 6 H -0.210 1.210 7 C -0.593 4.593 8 H 0.084 0.916 9 C 0.161 3.839 10 H 0.000 1.000 11 C -0.177 4.177 12 C -0.152 4.152 13 C -0.170 4.170 14 C -0.007 4.007 15 C -0.062 4.062 16 O -0.327 6.327 17 C -0.027 4.027 18 O -0.283 6.283 19 H 0.069 0.931 20 H 0.071 0.929 21 H 0.081 0.919 22 H 0.107 0.893 23 H 0.077 0.923 24 H 0.092 0.908 25 H 0.121 0.879 26 H 0.133 0.867 27 H 0.076 0.924 28 H 0.096 0.904 29 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 0.453 -9.979 -2.055 10.199 hybrid contribution 0.322 1.064 0.319 1.156 sum 0.775 -8.916 -1.736 9.116 Atomic orbital electron populations 1.70210 1.07666 1.27344 1.47840 1.25996 0.95615 1.03193 0.93222 0.85515 0.78686 0.78554 0.78596 1.19327 1.18823 1.21025 1.21469 0.93144 0.91392 1.53330 0.91555 1.19608 0.87233 0.93521 0.83535 0.99994 1.22109 0.98747 0.95634 1.01232 1.21605 0.98768 0.97047 0.97820 1.22070 0.98852 0.96908 0.99212 1.24118 0.92430 0.88846 0.95319 1.24565 0.90699 0.99045 0.91860 1.89631 1.48368 1.75936 1.18781 1.24239 0.84793 1.01227 0.92457 1.88248 1.59898 1.34197 1.46006 0.93086 0.92871 0.91881 0.89342 0.92327 0.90805 0.87940 0.86666 0.92400 0.90372 0.85245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -55.58 12.84 21.45 0.28 -55.30 15 2 C 0.02 1.32 5.40 84.66 0.46 1.77 15 3 Si 0.96 44.92 29.54 68.60 2.03 46.95 15 4 H -0.27 -11.92 7.11 99.48 0.71 -11.22 15 5 H -0.26 -11.82 7.11 99.48 0.71 -11.12 15 6 H -0.28 -13.16 7.11 99.48 0.71 -12.45 15 7 C -0.56 -32.12 8.79 25.60 0.23 -31.89 15 8 H 0.07 3.67 7.74 -2.91 -0.02 3.65 15 9 C 0.22 11.40 2.40 29.87 0.07 11.47 15 10 H -0.02 -1.01 7.37 -2.39 -0.02 -1.03 15 11 C -0.14 -5.71 5.30 30.67 0.16 -5.55 15 12 C -0.12 -3.59 5.98 30.76 0.18 -3.41 15 13 C -0.13 -3.97 5.26 30.60 0.16 -3.81 15 14 C 0.03 1.36 1.15 -10.53 -0.01 1.35 15 15 C 0.02 0.59 8.31 72.13 0.60 1.19 15 16 O -0.41 -17.84 12.46 -138.28 -1.72 -19.56 15 17 C 0.05 1.74 8.61 72.14 0.62 2.36 15 18 O -0.36 -19.38 9.56 -138.28 -1.32 -20.70 15 19 H 0.26 15.37 8.31 -92.70 -0.77 14.60 15 20 H 0.05 2.19 8.14 -2.38 -0.02 2.17 15 21 H 0.06 2.47 8.14 -2.39 -0.02 2.45 15 22 H 0.09 2.18 8.14 -2.39 -0.02 2.16 15 23 H 0.06 1.81 8.14 -2.38 -0.02 1.79 15 24 H 0.07 2.13 8.14 -2.38 -0.02 2.11 15 25 H 0.10 2.26 8.03 -2.39 -0.02 2.25 15 26 H 0.12 3.38 8.01 -2.39 -0.02 3.36 15 27 H 0.06 2.68 7.44 -2.39 -0.02 2.66 15 28 H 0.08 2.94 8.14 -2.39 -0.02 2.92 15 29 H 0.13 3.22 8.08 -2.39 -0.02 3.20 15 Total: -1.00 -70.46 240.77 2.85 -67.62 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: 1.12 Total: 7.52 kcal Atomic # 6 Polarization: -28.99 SS G_CDS: 2.47 Total: -26.52 kcal Atomic # 7 Polarization: -55.58 SS G_CDS: 0.28 Total: -55.30 kcal Atomic # 8 Polarization: -37.22 SS G_CDS: -3.04 Total: -40.26 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -70.46 2.85 -67.62 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693639085.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.688 kcal (2) G-P(sol) polarization free energy of solvation -70.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds