Wall clock time and date at job start Mon Mar 30 2020 02:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86794 * 120.00113 * 2 1 4 4 H 1.48499 * 109.47620 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47024 * 300.00090 * 3 2 1 6 6 H 1.48509 * 109.47148 * 59.99879 * 3 2 1 7 7 C 1.37880 * 120.00089 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00123 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99945 * 359.97438 * 7 2 1 10 10 C 1.50698 * 109.47156 * 179.97438 * 9 7 2 11 11 O 1.20765 * 119.99959 * 0.02562 * 10 9 7 12 12 C 1.50703 * 120.00045 * 180.02562 * 10 9 7 13 13 H 1.08998 * 109.49091 * 320.02746 * 12 10 9 14 14 C 1.53090 * 109.48105 * 80.06085 * 12 10 9 15 15 C 1.53181 * 109.16481 * 177.59465 * 14 12 10 16 16 C 1.53186 * 109.02951 * 303.01710 * 15 14 12 17 17 C 1.53087 * 109.16665 * 56.98173 * 16 15 14 18 18 O 1.42905 * 109.41504 * 302.39123 * 17 16 15 19 19 H 0.96994 * 120.00461 * 359.97438 * 1 2 3 20 20 H 1.09003 * 109.46930 * 60.00421 * 9 7 2 21 21 H 1.08997 * 109.47654 * 299.99994 * 9 7 2 22 22 H 1.09007 * 109.51738 * 297.49541 * 14 12 10 23 23 H 1.08996 * 109.52412 * 57.68515 * 14 12 10 24 24 H 1.08997 * 109.54268 * 62.87505 * 15 14 12 25 25 H 1.08995 * 109.54695 * 183.15097 * 15 14 12 26 26 H 1.09001 * 109.51857 * 176.88572 * 16 15 14 27 27 H 1.08995 * 109.52201 * 297.01063 * 16 15 14 28 28 H 1.08994 * 109.48330 * 182.40659 * 17 16 15 29 29 H 1.09001 * 109.48123 * 62.37055 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2303 -3.6446 0.0015 11 8 3.4176 -3.4239 0.0009 12 6 1.7280 -5.0654 0.0019 13 1 0.8646 -5.1457 0.6624 14 6 1.3223 -5.4640 -1.4195 15 6 0.8698 -6.9274 -1.4216 16 6 2.0025 -7.8012 -0.8737 17 6 2.3819 -7.3125 0.5266 18 8 2.7629 -5.9366 0.4624 19 1 -0.4850 0.8400 0.0004 20 1 0.6241 -2.5575 -0.8881 21 1 0.6247 -2.5564 0.8919 22 1 0.5028 -4.8288 -1.7559 23 1 2.1747 -5.3453 -2.0884 24 1 -0.0127 -7.0371 -0.7914 25 1 0.6327 -7.2343 -2.4402 26 1 1.6694 -8.8377 -0.8198 27 1 2.8682 -7.7306 -1.5322 28 1 3.2162 -7.9035 0.9042 29 1 1.5271 -7.4221 1.1939 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702577974.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:05 Heat of formation + Delta-G solvation = -123.254968 kcal Electronic energy + Delta-G solvation = -12678.087135 eV Core-core repulsion = 10371.841246 eV Total energy + Delta-G solvation = -2306.245889 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.00829 -39.15236 -35.17286 -34.59823 -32.73457 -30.85839 -27.19664 -25.17360 -24.65754 -21.30266 -20.56879 -18.63005 -17.44482 -17.22232 -16.65532 -16.27013 -15.81398 -15.30094 -15.10053 -14.77052 -14.24938 -13.74317 -13.59300 -13.17523 -12.86296 -12.60314 -12.41694 -12.15781 -12.07799 -11.91360 -11.47063 -11.31836 -10.64833 -10.50286 -10.09290 -8.27653 -6.36292 1.16746 1.37832 1.38792 1.53405 2.36617 2.61429 3.06862 3.48871 3.83823 3.91750 4.05062 4.09371 4.19184 4.51741 4.64005 4.71712 4.82853 4.89169 5.05162 5.06138 5.12355 5.16034 5.26060 5.37447 5.67763 6.02848 6.25835 6.74772 6.86032 7.32997 8.84211 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.073300 B = 0.007934 C = 0.007512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 381.899796 B = 3528.370122 C = 3726.679656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.013 3.987 3 Si 0.962 3.038 4 H -0.276 1.276 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.548 4.548 8 H 0.052 0.948 9 C -0.020 4.020 10 C 0.362 3.638 11 O -0.486 6.486 12 C 0.047 3.953 13 H 0.100 0.900 14 C -0.141 4.141 15 C -0.115 4.115 16 C -0.153 4.153 17 C 0.046 3.954 18 O -0.398 6.398 19 H 0.268 0.732 20 H 0.054 0.946 21 H 0.049 0.951 22 H 0.087 0.913 23 H 0.056 0.944 24 H 0.081 0.919 25 H 0.088 0.912 26 H 0.103 0.897 27 H 0.060 0.940 28 H 0.106 0.894 29 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.456 -14.460 -1.644 14.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.186 4.186 3 Si 0.787 3.213 4 H -0.201 1.201 5 H -0.196 1.196 6 H -0.197 1.197 7 C -0.585 4.585 8 H 0.070 0.930 9 C -0.057 4.057 10 C 0.239 3.761 11 O -0.361 6.361 12 C -0.012 4.012 13 H 0.118 0.882 14 C -0.179 4.179 15 C -0.152 4.152 16 C -0.191 4.191 17 C -0.029 4.029 18 O -0.318 6.318 19 H 0.077 0.923 20 H 0.072 0.928 21 H 0.067 0.933 22 H 0.105 0.895 23 H 0.075 0.925 24 H 0.100 0.900 25 H 0.106 0.894 26 H 0.121 0.879 27 H 0.079 0.921 28 H 0.124 0.876 29 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.793 -14.172 -1.594 14.283 hybrid contribution 0.119 0.964 -0.010 0.971 sum -0.674 -13.208 -1.604 13.322 Atomic orbital electron populations 1.70022 1.07077 1.28125 1.50899 1.25765 0.95852 1.02684 0.94290 0.85437 0.78575 0.78938 0.78352 1.20094 1.19558 1.19664 1.21431 0.93624 0.91749 1.51742 0.92991 1.19499 0.95137 0.91628 0.99444 1.25426 0.90121 0.91907 0.68693 1.90222 1.21243 1.88023 1.36644 1.22653 0.91750 0.88678 0.98097 0.88222 1.22062 1.02060 0.99715 0.94029 1.21610 0.98530 0.91827 1.03233 1.22199 0.99091 1.01093 0.96674 1.22933 1.01863 0.80761 0.97373 1.88023 1.38383 1.18645 1.86777 0.92270 0.92769 0.93269 0.89489 0.92507 0.90011 0.89367 0.87858 0.92090 0.87601 0.91632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.88 13.29 21.45 0.28 -53.59 15 2 C 0.01 0.76 5.46 84.66 0.46 1.22 15 3 Si 0.96 45.47 29.54 68.60 2.03 47.50 15 4 H -0.28 -13.21 7.11 99.48 0.71 -12.50 15 5 H -0.27 -12.16 7.11 99.48 0.71 -11.45 15 6 H -0.27 -12.25 7.11 99.48 0.71 -11.54 15 7 C -0.55 -32.62 8.92 25.60 0.23 -32.39 15 8 H 0.05 3.26 6.76 -2.91 -0.02 3.24 15 9 C -0.02 -1.05 5.40 29.10 0.16 -0.89 15 10 C 0.36 17.07 6.41 29.10 0.19 17.25 15 11 O -0.49 -26.70 15.72 16.82 0.26 -26.44 15 12 C 0.05 1.65 2.99 29.88 0.09 1.74 15 13 H 0.10 3.08 8.14 -2.39 -0.02 3.06 15 14 C -0.14 -4.09 5.40 30.68 0.17 -3.93 15 15 C -0.11 -2.32 6.03 30.72 0.19 -2.13 15 16 C -0.15 -2.94 6.14 30.69 0.19 -2.76 15 17 C 0.05 1.09 6.84 72.01 0.49 1.58 15 18 O -0.40 -14.25 10.02 -130.70 -1.31 -15.56 15 19 H 0.27 14.62 8.31 -92.71 -0.77 13.85 15 20 H 0.05 2.79 8.14 -2.39 -0.02 2.77 15 21 H 0.05 2.57 8.14 -2.39 -0.02 2.56 15 22 H 0.09 2.45 8.14 -2.38 -0.02 2.43 15 23 H 0.06 1.82 8.14 -2.39 -0.02 1.80 15 24 H 0.08 1.42 8.14 -2.39 -0.02 1.40 15 25 H 0.09 1.47 8.14 -2.39 -0.02 1.45 15 26 H 0.10 1.35 8.14 -2.39 -0.02 1.33 15 27 H 0.06 1.30 8.14 -2.39 -0.02 1.28 15 28 H 0.11 2.12 8.14 -2.39 -0.02 2.10 15 29 H 0.07 1.31 8.14 -2.39 -0.02 1.29 15 Total: -1.00 -69.88 248.09 4.54 -65.34 By element: Atomic # 1 Polarization: 1.95 SS G_CDS: 1.12 Total: 3.07 kcal Atomic # 6 Polarization: -22.47 SS G_CDS: 2.16 Total: -20.31 kcal Atomic # 7 Polarization: -53.88 SS G_CDS: 0.28 Total: -53.59 kcal Atomic # 8 Polarization: -40.95 SS G_CDS: -1.04 Total: -42.00 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -69.88 4.54 -65.34 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702577974.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.918 kcal (2) G-P(sol) polarization free energy of solvation -69.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds