Wall clock time and date at job start Mon Mar 30 2020 02:39:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.08997 * 109.47165 * 2 1
4 4 C 1.50703 * 109.47370 * 240.00157 * 2 1 3
5 5 H 1.07995 * 120.00379 * 245.69434 * 4 2 1
6 6 C 1.37880 * 119.99561 * 65.68715 * 4 2 1
7 7 N 1.31508 * 120.00378 * 359.97438 * 6 4 2
8 8 Si 1.86807 * 119.99656 * 180.02562 * 6 4 2
9 9 H 1.48492 * 109.47145 * 89.99978 * 8 6 4
10 10 H 1.48500 * 109.46866 * 210.00062 * 8 6 4
11 11 H 1.48500 * 109.47029 * 329.99972 * 8 6 4
12 12 C 1.52998 * 109.46678 * 120.00441 * 2 1 3
13 13 C 1.50694 * 115.55262 * 65.84806 * 12 2 1
14 14 O 1.20834 * 120.00223 * 140.15729 * 13 12 2
15 15 O 1.34225 * 119.99887 * 320.42983 * 13 12 2
16 16 C 1.52995 * 117.51781 * 280.13905 * 12 2 1
17 17 C 1.52999 * 60.00350 * 252.52393 * 16 12 2
18 18 H 1.09006 * 117.51859 * 252.51846 * 17 16 12
19 19 C 1.52997 * 117.49996 * 107.48992 * 17 16 12
20 20 H 1.08994 * 109.47367 * 299.28726 * 1 2 3
21 21 H 1.09007 * 109.46666 * 59.28836 * 1 2 3
22 22 H 1.09002 * 109.47060 * 179.27983 * 1 2 3
23 23 H 0.96996 * 120.00059 * 179.97438 * 7 6 4
24 24 H 0.96701 * 117.00061 * 179.72622 * 15 13 12
25 25 H 1.09002 * 117.50114 * 0.02562 * 16 12 2
26 26 H 1.09005 * 117.50184 * 145.03115 * 16 12 2
27 27 H 1.09003 * 109.46780 * 356.26927 * 19 17 16
28 28 H 1.09002 * 109.47661 * 116.26672 * 19 17 16
29 29 H 1.09000 * 109.47258 * 236.26808 * 19 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0324 -0.7104 -1.2305
5 1 2.5754 -1.6389 -1.1341
6 6 1.7987 -0.1748 -2.4793
7 7 1.1370 0.9556 -2.5968
8 14 2.4208 -1.0557 -4.0047
9 1 1.3825 -2.0005 -4.4887
10 1 2.7169 -0.0595 -5.0654
11 1 3.6577 -1.8073 -3.6723
12 6 2.0399 -0.7214 1.2492
13 6 1.7320 -2.1948 1.3201
14 8 2.5606 -2.9655 1.7439
15 8 0.5394 -2.6518 0.9074
16 6 2.0503 0.0622 2.5632
17 6 3.3662 -0.2472 1.8468
18 1 4.0163 -1.0012 2.2909
19 6 4.0808 0.9123 1.1497
20 1 -0.3634 0.5027 0.8962
21 1 -0.3633 0.5249 -0.8836
22 1 -0.3633 -1.0276 -0.0129
23 1 0.9729 1.3325 -3.4753
24 1 0.3895 -3.6052 0.9684
25 1 1.6934 1.0919 2.5381
26 1 1.8343 -0.4880 3.4791
27 1 3.4716 1.8129 1.2261
28 1 5.0454 1.0845 1.6273
29 1 4.2344 0.6655 0.0992
RHF calculation, no. of doubly occupied orbitals= 37
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000703308834.mol2 29
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:39:42
Heat of formation + Delta-G solvation = -81.996672 kcal
Electronic energy + Delta-G solvation = -13247.102033 eV
Core-core repulsion = 10942.645238 eV
Total energy + Delta-G solvation = -2304.456795 eV
No. of doubly occupied orbitals = 37
Molecular weight
(most abundant/longest-lived isotopes) = 198.104 amu
Computer time = 0.14 seconds
Orbital eigenvalues (eV)
-39.90429 -37.22153 -35.38455 -33.26945 -30.18912 -27.92963 -25.17441 -24.03756
-21.53406 -20.56724 -18.33547 -17.24700 -16.64057 -15.40797 -14.84623 -14.44357
-13.64640 -13.30732 -12.66873 -12.46994 -12.21106 -11.75094 -11.33224 -10.97284
-10.90526 -10.83979 -10.74253 -10.46132 -10.25884 -10.00756 -9.59501 -9.30025
-9.04762 -8.62632 -8.34260 -6.00583 -4.04185 2.87920 3.30930 3.37718
3.42059 3.76770 4.37113 4.48470 5.30544 5.39492 5.43153 5.60514
5.90096 6.05684 6.20583 6.37227 6.42781 6.63049 6.72019 6.96500
7.00915 7.15764 7.27337 7.33760 7.71029 7.97911 8.07334 8.40448
8.66795 8.96768 9.59487 11.07155
Molecular weight = 198.10amu
Principal moments of inertia in cm(-1)
A = 0.032596 B = 0.014348 C = 0.013093
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 858.786965 B = 1951.066143 C = 2138.107123
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C 0.084 3.916
3 H 0.047 0.953
4 C -0.505 4.505
5 H 0.050 0.950
6 C 0.065 3.935
7 N -0.889 5.889
8 Si 0.887 3.113
9 H -0.281 1.281
10 H -0.286 1.286
11 H -0.275 1.275
12 C -0.107 4.107
13 C 0.534 3.466
14 O -0.545 6.545
15 O -0.492 6.492
16 C -0.164 4.164
17 C -0.118 4.118
18 H 0.104 0.896
19 C -0.116 4.116
20 H 0.006 0.994
21 H 0.071 0.929
22 H 0.049 0.951
23 H 0.260 0.740
24 H 0.391 0.609
25 H 0.103 0.897
26 H 0.086 0.914
27 H 0.056 0.944
28 H 0.048 0.952
29 H 0.077 0.923
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.370 -1.432 6.521 6.687
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.195 4.195
2 C 0.066 3.934
3 H 0.064 0.936
4 C -0.543 4.543
5 H 0.068 0.932
6 C -0.136 4.136
7 N -0.528 5.528
8 Si 0.715 3.285
9 H -0.207 1.207
10 H -0.212 1.212
11 H -0.200 1.200
12 C -0.108 4.108
13 C 0.379 3.621
14 O -0.436 6.436
15 O -0.301 6.301
16 C -0.201 4.201
17 C -0.136 4.136
18 H 0.122 0.878
19 C -0.173 4.173
20 H 0.025 0.975
21 H 0.090 0.910
22 H 0.068 0.932
23 H 0.070 0.930
24 H 0.248 0.752
25 H 0.121 0.879
26 H 0.104 0.896
27 H 0.075 0.925
28 H 0.067 0.933
29 H 0.096 0.904
Dipole moment (debyes) X Y Z Total
from point charges 0.588 -1.069 6.459 6.573
hybrid contribution 0.158 -1.235 -0.887 1.529
sum 0.746 -2.304 5.571 6.075
Atomic orbital electron populations
1.21865 0.98028 1.00525 0.99107 1.18314 0.92711 0.95234 0.87180
0.93555 1.20993 1.35096 1.07689 0.90548 0.93221 1.24873 0.95131
0.94893 0.98727 1.69907 1.40594 1.18755 1.23547 0.86669 0.79288
0.79501 0.83039 1.20733 1.21212 1.19984 1.21538 1.02679 0.88073
0.98517 1.22439 0.78241 0.90828 0.70604 1.90599 1.48421 1.58939
1.45624 1.84750 1.36797 1.30247 1.78320 1.23217 1.01705 1.01085
0.94110 1.22350 0.89689 1.00449 1.01118 0.87819 1.21330 0.98442
0.95969 1.01602 0.97465 0.91039 0.93196 0.93011 0.75232 0.87904
0.89601 0.92485 0.93255 0.90391
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.26 8.80 37.16 0.33 -2.93 15
2 C 0.08 2.02 1.55 -91.77 -0.14 1.88 15
3 H 0.05 1.18 6.65 -51.93 -0.35 0.84 15
4 C -0.51 -13.59 8.10 -34.44 -0.28 -13.87 15
5 H 0.05 1.38 7.26 -52.49 -0.38 1.00 15
6 C 0.07 1.78 5.33 -17.82 -0.09 1.68 15
7 N -0.89 -24.91 11.75 55.43 0.65 -24.26 15
8 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 15
9 H -0.28 -6.74 7.11 56.52 0.40 -6.34 15
10 H -0.29 -6.81 7.11 56.52 0.40 -6.41 15
11 H -0.27 -6.62 7.11 56.52 0.40 -6.22 15
12 C -0.11 -2.26 1.58 -155.66 -0.25 -2.50 15
13 C 0.53 11.33 6.83 36.00 0.25 11.57 15
14 O -0.54 -12.25 17.03 -18.76 -0.32 -12.57 15
15 O -0.49 -9.26 10.75 -39.24 -0.42 -9.68 15
16 C -0.16 -2.86 9.60 -26.73 -0.26 -3.12 15
17 C -0.12 -2.21 5.92 -90.62 -0.54 -2.75 15
18 H 0.10 1.93 7.68 -51.93 -0.40 1.53 15
19 C -0.12 -2.06 8.82 37.16 0.33 -1.73 15
20 H 0.01 0.14 8.14 -51.93 -0.42 -0.29 15
21 H 0.07 1.86 6.55 -51.92 -0.34 1.52 15
22 H 0.05 1.16 5.70 -51.93 -0.30 0.86 15
23 H 0.26 6.99 8.31 -40.82 -0.34 6.65 15
24 H 0.39 5.25 9.10 45.56 0.41 5.66 15
25 H 0.10 1.68 8.03 -51.93 -0.42 1.26 15
26 H 0.09 1.35 8.14 -51.93 -0.42 0.93 15
27 H 0.06 0.98 7.44 -51.93 -0.39 0.59 15
28 H 0.05 0.73 8.14 -51.93 -0.42 0.30 15
29 H 0.08 1.57 8.03 -51.93 -0.42 1.15 15
LS Contribution 246.11 15.07 3.71 3.71
Total: -1.00 -30.16 246.11 -5.03 -35.19
By element:
Atomic # 1 Polarization: 6.02 SS G_CDS: -2.97 Total: 3.05 kcal
Atomic # 6 Polarization: -11.10 SS G_CDS: -0.65 Total: -11.75 kcal
Atomic # 7 Polarization: -24.91 SS G_CDS: 0.65 Total: -24.26 kcal
Atomic # 8 Polarization: -21.50 SS G_CDS: -0.74 Total: -22.25 kcal
Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal
Total LS contribution 3.71 Total: 3.71 kcal
Total: -30.16 -5.03 -35.19 kcal
The number of atoms in the molecule is 29
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000703308834.mol2 29
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -46.807 kcal
(2) G-P(sol) polarization free energy of solvation -30.163 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.970 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.026 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.190 kcal
(6) G-S(sol) free energy of system = (1) + (5) -81.997 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.14 seconds