Wall clock time and date at job start Mon Mar 30 2020 02:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47165 * 2 1 4 4 C 1.50703 * 109.47370 * 240.00157 * 2 1 3 5 5 H 1.07995 * 120.00379 * 245.69434 * 4 2 1 6 6 C 1.37880 * 119.99561 * 65.68715 * 4 2 1 7 7 N 1.31508 * 120.00378 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 119.99656 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47145 * 89.99978 * 8 6 4 10 10 H 1.48500 * 109.46866 * 210.00062 * 8 6 4 11 11 H 1.48500 * 109.47029 * 329.99972 * 8 6 4 12 12 C 1.52998 * 109.46678 * 120.00441 * 2 1 3 13 13 C 1.50694 * 115.55262 * 65.84806 * 12 2 1 14 14 O 1.20834 * 120.00223 * 140.15729 * 13 12 2 15 15 O 1.34225 * 119.99887 * 320.42983 * 13 12 2 16 16 C 1.52995 * 117.51781 * 280.13905 * 12 2 1 17 17 C 1.52999 * 60.00350 * 252.52393 * 16 12 2 18 18 H 1.09006 * 117.51859 * 252.51846 * 17 16 12 19 19 C 1.52997 * 117.49996 * 107.48992 * 17 16 12 20 20 H 1.08994 * 109.47367 * 299.28726 * 1 2 3 21 21 H 1.09007 * 109.46666 * 59.28836 * 1 2 3 22 22 H 1.09002 * 109.47060 * 179.27983 * 1 2 3 23 23 H 0.96996 * 120.00059 * 179.97438 * 7 6 4 24 24 H 0.96701 * 117.00061 * 179.72622 * 15 13 12 25 25 H 1.09002 * 117.50114 * 0.02562 * 16 12 2 26 26 H 1.09005 * 117.50184 * 145.03115 * 16 12 2 27 27 H 1.09003 * 109.46780 * 356.26927 * 19 17 16 28 28 H 1.09002 * 109.47661 * 116.26672 * 19 17 16 29 29 H 1.09000 * 109.47258 * 236.26808 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.5754 -1.6389 -1.1341 6 6 1.7987 -0.1748 -2.4793 7 7 1.1370 0.9556 -2.5968 8 14 2.4208 -1.0557 -4.0047 9 1 1.3825 -2.0005 -4.4887 10 1 2.7169 -0.0595 -5.0654 11 1 3.6577 -1.8073 -3.6723 12 6 2.0399 -0.7214 1.2492 13 6 1.7320 -2.1948 1.3201 14 8 2.5606 -2.9655 1.7439 15 8 0.5394 -2.6518 0.9074 16 6 2.0503 0.0622 2.5632 17 6 3.3662 -0.2472 1.8468 18 1 4.0163 -1.0012 2.2909 19 6 4.0808 0.9123 1.1497 20 1 -0.3634 0.5027 0.8962 21 1 -0.3633 0.5249 -0.8836 22 1 -0.3633 -1.0276 -0.0129 23 1 0.9729 1.3325 -3.4753 24 1 0.3895 -3.6052 0.9684 25 1 1.6934 1.0919 2.5381 26 1 1.8343 -0.4880 3.4791 27 1 3.4716 1.8129 1.2261 28 1 5.0454 1.0845 1.6273 29 1 4.2344 0.6655 0.0992 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703308834.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:42 Heat of formation + Delta-G solvation = -81.996672 kcal Electronic energy + Delta-G solvation = -13247.102033 eV Core-core repulsion = 10942.645238 eV Total energy + Delta-G solvation = -2304.456795 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.90429 -37.22153 -35.38455 -33.26945 -30.18912 -27.92963 -25.17441 -24.03756 -21.53406 -20.56724 -18.33547 -17.24700 -16.64057 -15.40797 -14.84623 -14.44357 -13.64640 -13.30732 -12.66873 -12.46994 -12.21106 -11.75094 -11.33224 -10.97284 -10.90526 -10.83979 -10.74253 -10.46132 -10.25884 -10.00756 -9.59501 -9.30025 -9.04762 -8.62632 -8.34260 -6.00583 -4.04185 2.87920 3.30930 3.37718 3.42059 3.76770 4.37113 4.48470 5.30544 5.39492 5.43153 5.60514 5.90096 6.05684 6.20583 6.37227 6.42781 6.63049 6.72019 6.96500 7.00915 7.15764 7.27337 7.33760 7.71029 7.97911 8.07334 8.40448 8.66795 8.96768 9.59487 11.07155 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.032596 B = 0.014348 C = 0.013093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.786965 B = 1951.066143 C = 2138.107123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.084 3.916 3 H 0.047 0.953 4 C -0.505 4.505 5 H 0.050 0.950 6 C 0.065 3.935 7 N -0.889 5.889 8 Si 0.887 3.113 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.275 1.275 12 C -0.107 4.107 13 C 0.534 3.466 14 O -0.545 6.545 15 O -0.492 6.492 16 C -0.164 4.164 17 C -0.118 4.118 18 H 0.104 0.896 19 C -0.116 4.116 20 H 0.006 0.994 21 H 0.071 0.929 22 H 0.049 0.951 23 H 0.260 0.740 24 H 0.391 0.609 25 H 0.103 0.897 26 H 0.086 0.914 27 H 0.056 0.944 28 H 0.048 0.952 29 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.370 -1.432 6.521 6.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.066 3.934 3 H 0.064 0.936 4 C -0.543 4.543 5 H 0.068 0.932 6 C -0.136 4.136 7 N -0.528 5.528 8 Si 0.715 3.285 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.200 1.200 12 C -0.108 4.108 13 C 0.379 3.621 14 O -0.436 6.436 15 O -0.301 6.301 16 C -0.201 4.201 17 C -0.136 4.136 18 H 0.122 0.878 19 C -0.173 4.173 20 H 0.025 0.975 21 H 0.090 0.910 22 H 0.068 0.932 23 H 0.070 0.930 24 H 0.248 0.752 25 H 0.121 0.879 26 H 0.104 0.896 27 H 0.075 0.925 28 H 0.067 0.933 29 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.588 -1.069 6.459 6.573 hybrid contribution 0.158 -1.235 -0.887 1.529 sum 0.746 -2.304 5.571 6.075 Atomic orbital electron populations 1.21865 0.98028 1.00525 0.99107 1.18314 0.92711 0.95234 0.87180 0.93555 1.20993 1.35096 1.07689 0.90548 0.93221 1.24873 0.95131 0.94893 0.98727 1.69907 1.40594 1.18755 1.23547 0.86669 0.79288 0.79501 0.83039 1.20733 1.21212 1.19984 1.21538 1.02679 0.88073 0.98517 1.22439 0.78241 0.90828 0.70604 1.90599 1.48421 1.58939 1.45624 1.84750 1.36797 1.30247 1.78320 1.23217 1.01705 1.01085 0.94110 1.22350 0.89689 1.00449 1.01118 0.87819 1.21330 0.98442 0.95969 1.01602 0.97465 0.91039 0.93196 0.93011 0.75232 0.87904 0.89601 0.92485 0.93255 0.90391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.26 8.80 37.16 0.33 -2.93 15 2 C 0.08 2.02 1.55 -91.77 -0.14 1.88 15 3 H 0.05 1.18 6.65 -51.93 -0.35 0.84 15 4 C -0.51 -13.59 8.10 -34.44 -0.28 -13.87 15 5 H 0.05 1.38 7.26 -52.49 -0.38 1.00 15 6 C 0.07 1.78 5.33 -17.82 -0.09 1.68 15 7 N -0.89 -24.91 11.75 55.43 0.65 -24.26 15 8 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 15 9 H -0.28 -6.74 7.11 56.52 0.40 -6.34 15 10 H -0.29 -6.81 7.11 56.52 0.40 -6.41 15 11 H -0.27 -6.62 7.11 56.52 0.40 -6.22 15 12 C -0.11 -2.26 1.58 -155.66 -0.25 -2.50 15 13 C 0.53 11.33 6.83 36.00 0.25 11.57 15 14 O -0.54 -12.25 17.03 -18.76 -0.32 -12.57 15 15 O -0.49 -9.26 10.75 -39.24 -0.42 -9.68 15 16 C -0.16 -2.86 9.60 -26.73 -0.26 -3.12 15 17 C -0.12 -2.21 5.92 -90.62 -0.54 -2.75 15 18 H 0.10 1.93 7.68 -51.93 -0.40 1.53 15 19 C -0.12 -2.06 8.82 37.16 0.33 -1.73 15 20 H 0.01 0.14 8.14 -51.93 -0.42 -0.29 15 21 H 0.07 1.86 6.55 -51.92 -0.34 1.52 15 22 H 0.05 1.16 5.70 -51.93 -0.30 0.86 15 23 H 0.26 6.99 8.31 -40.82 -0.34 6.65 15 24 H 0.39 5.25 9.10 45.56 0.41 5.66 15 25 H 0.10 1.68 8.03 -51.93 -0.42 1.26 15 26 H 0.09 1.35 8.14 -51.93 -0.42 0.93 15 27 H 0.06 0.98 7.44 -51.93 -0.39 0.59 15 28 H 0.05 0.73 8.14 -51.93 -0.42 0.30 15 29 H 0.08 1.57 8.03 -51.93 -0.42 1.15 15 LS Contribution 246.11 15.07 3.71 3.71 Total: -1.00 -30.16 246.11 -5.03 -35.19 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -2.97 Total: 3.05 kcal Atomic # 6 Polarization: -11.10 SS G_CDS: -0.65 Total: -11.75 kcal Atomic # 7 Polarization: -24.91 SS G_CDS: 0.65 Total: -24.26 kcal Atomic # 8 Polarization: -21.50 SS G_CDS: -0.74 Total: -22.25 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -30.16 -5.03 -35.19 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703308834.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.807 kcal (2) G-P(sol) polarization free energy of solvation -30.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds