Wall clock time and date at job start Mon Mar 30 2020 02:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47165 * 2 1 4 4 C 1.50703 * 109.47370 * 240.00157 * 2 1 3 5 5 H 1.07995 * 120.00379 * 245.69434 * 4 2 1 6 6 C 1.37880 * 119.99561 * 65.68715 * 4 2 1 7 7 N 1.31508 * 120.00378 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 119.99656 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47145 * 89.99978 * 8 6 4 10 10 H 1.48500 * 109.46866 * 210.00062 * 8 6 4 11 11 H 1.48500 * 109.47029 * 329.99972 * 8 6 4 12 12 C 1.52998 * 109.46678 * 120.00441 * 2 1 3 13 13 C 1.50694 * 115.55262 * 65.84806 * 12 2 1 14 14 O 1.20834 * 120.00223 * 140.15729 * 13 12 2 15 15 O 1.34225 * 119.99887 * 320.42983 * 13 12 2 16 16 C 1.52995 * 117.51781 * 280.13905 * 12 2 1 17 17 C 1.52999 * 60.00350 * 252.52393 * 16 12 2 18 18 H 1.09006 * 117.51859 * 252.51846 * 17 16 12 19 19 C 1.52997 * 117.49996 * 107.48992 * 17 16 12 20 20 H 1.08994 * 109.47367 * 299.28726 * 1 2 3 21 21 H 1.09007 * 109.46666 * 59.28836 * 1 2 3 22 22 H 1.09002 * 109.47060 * 179.27983 * 1 2 3 23 23 H 0.96996 * 120.00059 * 179.97438 * 7 6 4 24 24 H 0.96701 * 117.00061 * 179.72622 * 15 13 12 25 25 H 1.09002 * 117.50114 * 0.02562 * 16 12 2 26 26 H 1.09005 * 117.50184 * 145.03115 * 16 12 2 27 27 H 1.09003 * 109.46780 * 356.26927 * 19 17 16 28 28 H 1.09002 * 109.47661 * 116.26672 * 19 17 16 29 29 H 1.09000 * 109.47258 * 236.26808 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.5754 -1.6389 -1.1341 6 6 1.7987 -0.1748 -2.4793 7 7 1.1370 0.9556 -2.5968 8 14 2.4208 -1.0557 -4.0047 9 1 1.3825 -2.0005 -4.4887 10 1 2.7169 -0.0595 -5.0654 11 1 3.6577 -1.8073 -3.6723 12 6 2.0399 -0.7214 1.2492 13 6 1.7320 -2.1948 1.3201 14 8 2.5606 -2.9655 1.7439 15 8 0.5394 -2.6518 0.9074 16 6 2.0503 0.0622 2.5632 17 6 3.3662 -0.2472 1.8468 18 1 4.0163 -1.0012 2.2909 19 6 4.0808 0.9123 1.1497 20 1 -0.3634 0.5027 0.8962 21 1 -0.3633 0.5249 -0.8836 22 1 -0.3633 -1.0276 -0.0129 23 1 0.9729 1.3325 -3.4753 24 1 0.3895 -3.6052 0.9684 25 1 1.6934 1.0919 2.5381 26 1 1.8343 -0.4880 3.4791 27 1 3.4716 1.8129 1.2261 28 1 5.0454 1.0845 1.6273 29 1 4.2344 0.6655 0.0992 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703308834.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:41 Heat of formation + Delta-G solvation = -100.712367 kcal Electronic energy + Delta-G solvation = -13247.913606 eV Core-core repulsion = 10942.645238 eV Total energy + Delta-G solvation = -2305.268368 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.49834 -38.78413 -36.99195 -35.21688 -32.08636 -29.42741 -27.16937 -25.67204 -23.33823 -22.04120 -19.94786 -18.88554 -18.51252 -17.21356 -16.52988 -16.27142 -15.20530 -14.93207 -14.48410 -14.09982 -13.85477 -13.30835 -13.18996 -12.77573 -12.70677 -12.43163 -12.33120 -12.26116 -12.11552 -11.78959 -11.27124 -11.09735 -10.72086 -10.42711 -10.36624 -8.08222 -6.16725 1.27400 1.39006 1.41434 1.49944 2.30818 2.43888 2.90534 3.23497 3.85414 3.97156 4.16584 4.48995 4.51387 4.82689 4.92325 5.01934 5.07423 5.10633 5.25831 5.37069 5.43577 5.58122 5.63310 5.69547 6.00745 6.12903 6.39499 6.89171 7.19371 7.49116 8.98378 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.032596 B = 0.014348 C = 0.013093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.786965 B = 1951.066143 C = 2138.107123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.089 3.911 3 H 0.028 0.972 4 C -0.512 4.512 5 H 0.033 0.967 6 C 0.022 3.978 7 N -0.912 5.912 8 Si 0.939 3.061 9 H -0.278 1.278 10 H -0.281 1.281 11 H -0.277 1.277 12 C -0.142 4.142 13 C 0.534 3.466 14 O -0.564 6.564 15 O -0.495 6.495 16 C -0.134 4.134 17 C -0.119 4.119 18 H 0.106 0.894 19 C -0.112 4.112 20 H 0.028 0.972 21 H 0.042 0.958 22 H 0.049 0.951 23 H 0.261 0.739 24 H 0.414 0.586 25 H 0.116 0.884 26 H 0.108 0.892 27 H 0.059 0.941 28 H 0.079 0.921 29 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.483 -1.583 7.403 7.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.071 3.929 3 H 0.046 0.954 4 C -0.551 4.551 5 H 0.052 0.948 6 C -0.177 4.177 7 N -0.552 5.552 8 Si 0.766 3.234 9 H -0.204 1.204 10 H -0.206 1.206 11 H -0.202 1.202 12 C -0.143 4.143 13 C 0.380 3.620 14 O -0.457 6.457 15 O -0.306 6.306 16 C -0.170 4.170 17 C -0.137 4.137 18 H 0.124 0.876 19 C -0.169 4.169 20 H 0.047 0.953 21 H 0.061 0.939 22 H 0.068 0.932 23 H 0.070 0.930 24 H 0.274 0.726 25 H 0.134 0.866 26 H 0.126 0.874 27 H 0.078 0.922 28 H 0.098 0.902 29 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.686 -1.236 7.339 7.474 hybrid contribution 0.104 -1.209 -1.144 1.668 sum 0.790 -2.446 6.196 6.708 Atomic orbital electron populations 1.21726 0.97816 1.00350 0.98763 1.18099 0.92776 0.94224 0.87801 0.95364 1.21193 1.34659 1.07174 0.92045 0.94826 1.25490 0.95510 0.95583 1.01113 1.69999 1.41466 1.19699 1.24019 0.85854 0.78641 0.78625 0.80327 1.20367 1.20609 1.20183 1.21449 1.05220 0.88413 0.99180 1.22448 0.78446 0.90828 0.70279 1.90584 1.49039 1.59321 1.46758 1.84673 1.35766 1.32477 1.77723 1.23329 0.99520 1.01314 0.92865 1.22455 0.89681 1.00573 1.00989 0.87618 1.21285 1.00123 0.95667 0.99800 0.95253 0.93888 0.93179 0.93005 0.72605 0.86591 0.87372 0.92228 0.90182 0.93574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.01 8.80 71.98 0.63 -5.38 15 2 C 0.09 4.28 1.55 -11.54 -0.02 4.26 15 3 H 0.03 1.45 6.65 -2.39 -0.02 1.43 15 4 C -0.51 -27.68 8.10 25.60 0.21 -27.47 15 5 H 0.03 1.88 7.26 -2.91 -0.02 1.86 15 6 C 0.02 1.20 5.33 84.66 0.45 1.66 15 7 N -0.91 -51.41 11.75 21.45 0.25 -51.16 15 8 Si 0.94 43.80 29.54 68.60 2.03 45.83 15 9 H -0.28 -12.73 7.11 99.48 0.71 -12.02 15 10 H -0.28 -12.75 7.11 99.48 0.71 -12.04 15 11 H -0.28 -12.88 7.11 99.48 0.71 -12.18 15 12 C -0.14 -5.77 1.58 -52.93 -0.08 -5.85 15 13 C 0.53 21.93 6.83 71.23 0.49 22.41 15 14 O -0.56 -24.64 17.03 21.94 0.37 -24.27 15 15 O -0.50 -17.86 10.75 -51.37 -0.55 -18.41 15 16 C -0.13 -4.26 9.60 30.59 0.29 -3.97 15 17 C -0.12 -4.24 5.92 -10.79 -0.06 -4.30 15 18 H 0.11 3.73 7.68 -2.38 -0.02 3.71 15 19 C -0.11 -3.80 8.82 71.98 0.63 -3.16 15 20 H 0.03 1.19 8.14 -2.39 -0.02 1.17 15 21 H 0.04 2.22 6.55 -2.38 -0.02 2.21 15 22 H 0.05 2.29 5.70 -2.39 -0.01 2.27 15 23 H 0.26 14.06 8.31 -92.71 -0.77 13.29 15 24 H 0.41 10.37 9.10 -74.06 -0.67 9.70 15 25 H 0.12 3.40 8.03 -2.39 -0.02 3.38 15 26 H 0.11 2.99 8.14 -2.38 -0.02 2.97 15 27 H 0.06 1.96 7.44 -2.39 -0.02 1.94 15 28 H 0.08 2.18 8.14 -2.39 -0.02 2.16 15 29 H 0.05 1.85 8.03 -2.39 -0.02 1.83 15 Total: -1.00 -63.24 246.11 5.12 -58.12 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: 0.48 Total: 11.69 kcal Atomic # 6 Polarization: -24.34 SS G_CDS: 2.54 Total: -21.80 kcal Atomic # 7 Polarization: -51.41 SS G_CDS: 0.25 Total: -51.16 kcal Atomic # 8 Polarization: -42.50 SS G_CDS: -0.18 Total: -42.68 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -63.24 5.12 -58.12 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703308834.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.594 kcal (2) G-P(sol) polarization free energy of solvation -63.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds