Wall clock time and date at job start Mon Mar 30 2020 02:39:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.08997 * 109.47165 * 2 1
4 4 C 1.50703 * 109.47370 * 240.00157 * 2 1 3
5 5 H 1.07995 * 120.00379 * 245.69434 * 4 2 1
6 6 C 1.37880 * 119.99561 * 65.68715 * 4 2 1
7 7 N 1.31508 * 120.00378 * 359.97438 * 6 4 2
8 8 Si 1.86807 * 119.99656 * 180.02562 * 6 4 2
9 9 H 1.48492 * 109.47145 * 89.99978 * 8 6 4
10 10 H 1.48500 * 109.46866 * 210.00062 * 8 6 4
11 11 H 1.48500 * 109.47029 * 329.99972 * 8 6 4
12 12 C 1.52998 * 109.46678 * 120.00441 * 2 1 3
13 13 C 1.50694 * 115.55262 * 65.84806 * 12 2 1
14 14 O 1.20834 * 120.00223 * 140.15729 * 13 12 2
15 15 O 1.34225 * 119.99887 * 320.42983 * 13 12 2
16 16 C 1.52995 * 117.51781 * 280.13905 * 12 2 1
17 17 C 1.52999 * 60.00350 * 252.52393 * 16 12 2
18 18 H 1.09006 * 117.51859 * 252.51846 * 17 16 12
19 19 C 1.52997 * 117.49996 * 107.48992 * 17 16 12
20 20 H 1.08994 * 109.47367 * 299.28726 * 1 2 3
21 21 H 1.09007 * 109.46666 * 59.28836 * 1 2 3
22 22 H 1.09002 * 109.47060 * 179.27983 * 1 2 3
23 23 H 0.96996 * 120.00059 * 179.97438 * 7 6 4
24 24 H 0.96701 * 117.00061 * 179.72622 * 15 13 12
25 25 H 1.09002 * 117.50114 * 0.02562 * 16 12 2
26 26 H 1.09005 * 117.50184 * 145.03115 * 16 12 2
27 27 H 1.09003 * 109.46780 * 356.26927 * 19 17 16
28 28 H 1.09002 * 109.47661 * 116.26672 * 19 17 16
29 29 H 1.09000 * 109.47258 * 236.26808 * 19 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0324 -0.7104 -1.2305
5 1 2.5754 -1.6389 -1.1341
6 6 1.7987 -0.1748 -2.4793
7 7 1.1370 0.9556 -2.5968
8 14 2.4208 -1.0557 -4.0047
9 1 1.3825 -2.0005 -4.4887
10 1 2.7169 -0.0595 -5.0654
11 1 3.6577 -1.8073 -3.6723
12 6 2.0399 -0.7214 1.2492
13 6 1.7320 -2.1948 1.3201
14 8 2.5606 -2.9655 1.7439
15 8 0.5394 -2.6518 0.9074
16 6 2.0503 0.0622 2.5632
17 6 3.3662 -0.2472 1.8468
18 1 4.0163 -1.0012 2.2909
19 6 4.0808 0.9123 1.1497
20 1 -0.3634 0.5027 0.8962
21 1 -0.3633 0.5249 -0.8836
22 1 -0.3633 -1.0276 -0.0129
23 1 0.9729 1.3325 -3.4753
24 1 0.3895 -3.6052 0.9684
25 1 1.6934 1.0919 2.5381
26 1 1.8343 -0.4880 3.4791
27 1 3.4716 1.8129 1.2261
28 1 5.0454 1.0845 1.6273
29 1 4.2344 0.6655 0.0992
RHF calculation, no. of doubly occupied orbitals= 37
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000703308834.mol2 29
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:39:41
Heat of formation + Delta-G solvation = -100.712367 kcal
Electronic energy + Delta-G solvation = -13247.913606 eV
Core-core repulsion = 10942.645238 eV
Total energy + Delta-G solvation = -2305.268368 eV
No. of doubly occupied orbitals = 37
Molecular weight
(most abundant/longest-lived isotopes) = 198.104 amu
Computer time = 0.17 seconds
Orbital eigenvalues (eV)
-41.49834 -38.78413 -36.99195 -35.21688 -32.08636 -29.42741 -27.16937 -25.67204
-23.33823 -22.04120 -19.94786 -18.88554 -18.51252 -17.21356 -16.52988 -16.27142
-15.20530 -14.93207 -14.48410 -14.09982 -13.85477 -13.30835 -13.18996 -12.77573
-12.70677 -12.43163 -12.33120 -12.26116 -12.11552 -11.78959 -11.27124 -11.09735
-10.72086 -10.42711 -10.36624 -8.08222 -6.16725 1.27400 1.39006 1.41434
1.49944 2.30818 2.43888 2.90534 3.23497 3.85414 3.97156 4.16584
4.48995 4.51387 4.82689 4.92325 5.01934 5.07423 5.10633 5.25831
5.37069 5.43577 5.58122 5.63310 5.69547 6.00745 6.12903 6.39499
6.89171 7.19371 7.49116 8.98378
Molecular weight = 198.10amu
Principal moments of inertia in cm(-1)
A = 0.032596 B = 0.014348 C = 0.013093
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 858.786965 B = 1951.066143 C = 2138.107123
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.129 4.129
2 C 0.089 3.911
3 H 0.028 0.972
4 C -0.512 4.512
5 H 0.033 0.967
6 C 0.022 3.978
7 N -0.912 5.912
8 Si 0.939 3.061
9 H -0.278 1.278
10 H -0.281 1.281
11 H -0.277 1.277
12 C -0.142 4.142
13 C 0.534 3.466
14 O -0.564 6.564
15 O -0.495 6.495
16 C -0.134 4.134
17 C -0.119 4.119
18 H 0.106 0.894
19 C -0.112 4.112
20 H 0.028 0.972
21 H 0.042 0.958
22 H 0.049 0.951
23 H 0.261 0.739
24 H 0.414 0.586
25 H 0.116 0.884
26 H 0.108 0.892
27 H 0.059 0.941
28 H 0.079 0.921
29 H 0.045 0.955
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.483 -1.583 7.403 7.586
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.187 4.187
2 C 0.071 3.929
3 H 0.046 0.954
4 C -0.551 4.551
5 H 0.052 0.948
6 C -0.177 4.177
7 N -0.552 5.552
8 Si 0.766 3.234
9 H -0.204 1.204
10 H -0.206 1.206
11 H -0.202 1.202
12 C -0.143 4.143
13 C 0.380 3.620
14 O -0.457 6.457
15 O -0.306 6.306
16 C -0.170 4.170
17 C -0.137 4.137
18 H 0.124 0.876
19 C -0.169 4.169
20 H 0.047 0.953
21 H 0.061 0.939
22 H 0.068 0.932
23 H 0.070 0.930
24 H 0.274 0.726
25 H 0.134 0.866
26 H 0.126 0.874
27 H 0.078 0.922
28 H 0.098 0.902
29 H 0.064 0.936
Dipole moment (debyes) X Y Z Total
from point charges 0.686 -1.236 7.339 7.474
hybrid contribution 0.104 -1.209 -1.144 1.668
sum 0.790 -2.446 6.196 6.708
Atomic orbital electron populations
1.21726 0.97816 1.00350 0.98763 1.18099 0.92776 0.94224 0.87801
0.95364 1.21193 1.34659 1.07174 0.92045 0.94826 1.25490 0.95510
0.95583 1.01113 1.69999 1.41466 1.19699 1.24019 0.85854 0.78641
0.78625 0.80327 1.20367 1.20609 1.20183 1.21449 1.05220 0.88413
0.99180 1.22448 0.78446 0.90828 0.70279 1.90584 1.49039 1.59321
1.46758 1.84673 1.35766 1.32477 1.77723 1.23329 0.99520 1.01314
0.92865 1.22455 0.89681 1.00573 1.00989 0.87618 1.21285 1.00123
0.95667 0.99800 0.95253 0.93888 0.93179 0.93005 0.72605 0.86591
0.87372 0.92228 0.90182 0.93574
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -6.01 8.80 71.98 0.63 -5.38 15
2 C 0.09 4.28 1.55 -11.54 -0.02 4.26 15
3 H 0.03 1.45 6.65 -2.39 -0.02 1.43 15
4 C -0.51 -27.68 8.10 25.60 0.21 -27.47 15
5 H 0.03 1.88 7.26 -2.91 -0.02 1.86 15
6 C 0.02 1.20 5.33 84.66 0.45 1.66 15
7 N -0.91 -51.41 11.75 21.45 0.25 -51.16 15
8 Si 0.94 43.80 29.54 68.60 2.03 45.83 15
9 H -0.28 -12.73 7.11 99.48 0.71 -12.02 15
10 H -0.28 -12.75 7.11 99.48 0.71 -12.04 15
11 H -0.28 -12.88 7.11 99.48 0.71 -12.18 15
12 C -0.14 -5.77 1.58 -52.93 -0.08 -5.85 15
13 C 0.53 21.93 6.83 71.23 0.49 22.41 15
14 O -0.56 -24.64 17.03 21.94 0.37 -24.27 15
15 O -0.50 -17.86 10.75 -51.37 -0.55 -18.41 15
16 C -0.13 -4.26 9.60 30.59 0.29 -3.97 15
17 C -0.12 -4.24 5.92 -10.79 -0.06 -4.30 15
18 H 0.11 3.73 7.68 -2.38 -0.02 3.71 15
19 C -0.11 -3.80 8.82 71.98 0.63 -3.16 15
20 H 0.03 1.19 8.14 -2.39 -0.02 1.17 15
21 H 0.04 2.22 6.55 -2.38 -0.02 2.21 15
22 H 0.05 2.29 5.70 -2.39 -0.01 2.27 15
23 H 0.26 14.06 8.31 -92.71 -0.77 13.29 15
24 H 0.41 10.37 9.10 -74.06 -0.67 9.70 15
25 H 0.12 3.40 8.03 -2.39 -0.02 3.38 15
26 H 0.11 2.99 8.14 -2.38 -0.02 2.97 15
27 H 0.06 1.96 7.44 -2.39 -0.02 1.94 15
28 H 0.08 2.18 8.14 -2.39 -0.02 2.16 15
29 H 0.05 1.85 8.03 -2.39 -0.02 1.83 15
Total: -1.00 -63.24 246.11 5.12 -58.12
By element:
Atomic # 1 Polarization: 11.21 SS G_CDS: 0.48 Total: 11.69 kcal
Atomic # 6 Polarization: -24.34 SS G_CDS: 2.54 Total: -21.80 kcal
Atomic # 7 Polarization: -51.41 SS G_CDS: 0.25 Total: -51.16 kcal
Atomic # 8 Polarization: -42.50 SS G_CDS: -0.18 Total: -42.68 kcal
Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal
Total: -63.24 5.12 -58.12 kcal
The number of atoms in the molecule is 29
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000703308834.mol2 29
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -42.594 kcal
(2) G-P(sol) polarization free energy of solvation -63.236 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.831 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.118 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.118 kcal
(6) G-S(sol) free energy of system = (1) + (5) -100.712 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.17 seconds