Wall clock time and date at job start Mon Mar 30 2020 02:24:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50706 * 109.84307 * 2 1 4 4 H 1.07998 * 119.99501 * 239.05654 * 3 2 1 5 5 C 1.37871 * 120.00436 * 59.05557 * 3 2 1 6 6 N 1.31514 * 120.00481 * 179.97438 * 5 3 2 7 7 Si 1.86803 * 119.99886 * 359.72901 * 5 3 2 8 8 H 1.48502 * 109.46964 * 270.27509 * 7 5 3 9 9 H 1.48505 * 109.47036 * 30.26897 * 7 5 3 10 10 H 1.48490 * 109.47395 * 150.27411 * 7 5 3 11 11 C 1.54177 * 109.85553 * 239.05611 * 2 1 3 12 12 C 1.55024 * 104.27970 * 242.15282 * 11 2 1 13 13 C 1.53763 * 101.89085 * 19.64934 * 12 11 2 14 14 C 1.52749 * 115.72934 * 194.59264 * 13 12 11 15 15 O 1.44436 * 85.09756 * 220.80989 * 14 13 12 16 16 C 1.44434 * 93.55628 * 23.28113 * 15 14 13 17 17 O 1.42935 * 105.32573 * 324.70647 * 13 12 11 18 18 H 1.09002 * 109.47074 * 60.69881 * 1 2 3 19 19 H 1.08998 * 109.47042 * 180.70197 * 1 2 3 20 20 H 1.09008 * 109.46772 * 300.70178 * 1 2 3 21 21 H 0.96999 * 120.00235 * 179.72806 * 6 5 3 22 22 H 1.09005 * 110.46487 * 0.85053 * 11 2 1 23 23 H 1.09000 * 110.47441 * 123.44954 * 11 2 1 24 24 H 1.08997 * 110.94899 * 137.79709 * 12 11 2 25 25 H 1.08997 * 110.94637 * 261.49723 * 12 11 2 26 26 H 1.08996 * 113.93175 * 334.84683 * 14 13 12 27 27 H 1.08994 * 113.93264 * 106.77357 * 14 13 12 28 28 H 1.09007 * 113.92765 * 222.68683 * 16 15 14 29 29 H 1.08990 * 114.06336 * 90.77462 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0416 1.4176 0.0000 4 1 2.6772 1.7622 -0.8022 5 6 1.6981 2.2745 1.0240 6 7 2.1449 3.5114 1.0243 7 14 0.5924 1.6806 2.4076 8 1 -0.8269 1.9296 2.0486 9 1 0.8016 0.2256 2.6186 10 1 0.9234 2.4144 3.6554 11 6 2.0537 -0.7456 -1.2437 12 6 2.8436 -1.9473 -0.6647 13 6 2.2714 -2.0461 0.7591 14 6 3.0682 -2.9092 1.7355 15 8 1.7767 -3.3732 2.1861 16 6 1.1215 -3.0345 0.9443 17 8 2.0214 -0.6972 1.1602 18 1 -0.3633 0.5029 -0.8962 19 1 -0.3633 -1.0276 0.0126 20 1 -0.3633 0.5247 0.8837 21 1 1.9001 4.1154 1.7427 22 1 1.2227 -1.0953 -1.8564 23 1 2.7126 -0.1010 -1.8254 24 1 2.6400 -2.8565 -1.2304 25 1 3.9126 -1.7360 -0.6413 26 1 3.6714 -3.6791 1.2545 27 1 3.6183 -2.3379 2.4832 28 1 0.1481 -2.5611 1.0728 29 1 1.1107 -3.8424 0.2128 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703534766.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:29 Heat of formation + Delta-G solvation = -42.274023 kcal Electronic energy + Delta-G solvation = -13613.822251 eV Core-core repulsion = 11311.087959 eV Total energy + Delta-G solvation = -2302.734291 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.57340 -37.45989 -32.80431 -31.48245 -30.58186 -27.22294 -26.36815 -25.03866 -22.60945 -19.88078 -19.17386 -16.97868 -16.26389 -15.59864 -15.40729 -14.62870 -14.04816 -13.68696 -13.12268 -12.63123 -12.55386 -12.41845 -11.95172 -11.50807 -11.27986 -10.99086 -10.41891 -10.11982 -9.95310 -9.80140 -9.60501 -9.54246 -8.99232 -8.57287 -8.35657 -6.14165 -4.22699 3.34888 3.46025 3.68745 3.89747 4.48599 4.50124 4.85976 5.26389 5.30893 5.40314 5.46698 5.69316 5.79203 5.85681 6.05615 6.13825 6.19024 6.30271 6.35738 6.43335 6.50280 6.58126 6.64223 6.80995 7.16297 7.62112 8.14911 8.40816 8.85820 9.50039 10.96151 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.042328 B = 0.015926 C = 0.014039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.340879 B = 1757.663813 C = 1993.992298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.187 3.813 3 C -0.515 4.515 4 H 0.080 0.920 5 C 0.084 3.916 6 N -0.890 5.890 7 Si 0.878 3.122 8 H -0.287 1.287 9 H -0.224 1.224 10 H -0.301 1.301 11 C -0.128 4.128 12 C -0.146 4.146 13 C 0.039 3.961 14 C 0.044 3.956 15 O -0.381 6.381 16 C 0.015 3.985 17 O -0.333 6.333 18 H 0.062 0.938 19 H 0.033 0.967 20 H 0.047 0.953 21 H 0.266 0.734 22 H 0.057 0.943 23 H 0.075 0.925 24 H 0.066 0.934 25 H 0.076 0.924 26 H 0.085 0.915 27 H 0.096 0.904 28 H 0.093 0.907 29 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.844 -11.514 -2.277 11.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.150 3.850 3 C -0.551 4.551 4 H 0.098 0.902 5 C -0.120 4.120 6 N -0.527 5.527 7 Si 0.708 3.292 8 H -0.215 1.215 9 H -0.148 1.148 10 H -0.229 1.229 11 C -0.166 4.166 12 C -0.184 4.184 13 C -0.003 4.003 14 C -0.033 4.033 15 O -0.300 6.300 16 C -0.062 4.062 17 O -0.253 6.253 18 H 0.081 0.919 19 H 0.052 0.948 20 H 0.066 0.934 21 H 0.076 0.924 22 H 0.076 0.924 23 H 0.094 0.906 24 H 0.085 0.915 25 H 0.094 0.906 26 H 0.103 0.897 27 H 0.114 0.886 28 H 0.111 0.889 29 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.897 -11.361 -1.748 11.529 hybrid contribution -0.584 -0.055 0.385 0.702 sum -1.482 -11.415 -1.363 11.592 Atomic orbital electron populations 1.22544 0.98372 0.98990 1.01671 1.20267 0.90148 0.92810 0.81746 1.20960 1.32987 0.91013 1.10182 0.90201 1.25062 0.95133 0.94332 0.97506 1.69907 1.44212 1.05421 1.33152 0.87059 0.79378 0.82016 0.80772 1.21453 1.14753 1.22931 1.22885 0.99085 0.95838 0.98778 1.22940 1.00990 0.98725 0.95730 1.24260 0.93477 0.88521 0.94011 1.23962 0.88006 0.94634 0.96683 1.89674 1.20917 1.86337 1.33024 1.24491 0.99176 0.96439 0.86084 1.89182 1.84653 1.15797 1.35630 0.91918 0.94793 0.93417 0.92449 0.92384 0.90637 0.91492 0.90552 0.89702 0.88580 0.88927 0.90241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.43 8.08 37.16 0.30 -3.13 15 2 C 0.19 4.37 0.71 -91.15 -0.06 4.31 15 3 C -0.51 -14.42 8.86 -34.44 -0.31 -14.72 15 4 H 0.08 2.38 7.58 -52.49 -0.40 1.98 15 5 C 0.08 2.46 5.45 -17.82 -0.10 2.37 15 6 N -0.89 -27.34 13.96 55.43 0.77 -26.56 15 7 Si 0.88 22.77 23.90 -169.99 -4.06 18.70 15 8 H -0.29 -7.21 6.87 56.52 0.39 -6.82 15 9 H -0.22 -5.77 5.39 56.52 0.30 -5.47 15 10 H -0.30 -7.91 7.11 56.52 0.40 -7.51 15 11 C -0.13 -2.45 6.28 -25.05 -0.16 -2.61 15 12 C -0.15 -2.41 6.50 -25.27 -0.16 -2.57 15 13 C 0.04 0.73 1.29 -90.48 -0.12 0.61 15 14 C 0.04 0.72 8.79 37.01 0.33 1.05 15 15 O -0.38 -7.13 12.46 -39.84 -0.50 -7.62 15 16 C 0.02 0.25 8.41 37.01 0.31 0.57 15 17 O -0.33 -7.92 7.76 -39.84 -0.31 -8.23 15 18 H 0.06 1.28 8.14 -51.93 -0.42 0.85 15 19 H 0.03 0.63 6.16 -51.93 -0.32 0.31 15 20 H 0.05 1.11 3.16 -51.92 -0.16 0.95 15 21 H 0.27 7.70 8.31 -40.82 -0.34 7.36 15 22 H 0.06 0.98 7.69 -51.93 -0.40 0.58 15 23 H 0.07 1.49 7.40 -51.93 -0.38 1.11 15 24 H 0.07 0.89 7.95 -51.93 -0.41 0.48 15 25 H 0.08 1.23 8.14 -51.93 -0.42 0.81 15 26 H 0.09 1.10 8.14 -51.93 -0.42 0.68 15 27 H 0.10 1.60 8.14 -51.93 -0.42 1.18 15 28 H 0.09 1.60 6.57 -51.93 -0.34 1.26 15 29 H 0.08 1.07 8.00 -51.93 -0.42 0.65 15 LS Contribution 227.19 15.07 3.42 3.42 Total: -1.00 -31.63 227.19 -4.41 -36.03 By element: Atomic # 1 Polarization: 2.17 SS G_CDS: -3.77 Total: -1.60 kcal Atomic # 6 Polarization: -14.18 SS G_CDS: 0.03 Total: -14.14 kcal Atomic # 7 Polarization: -27.34 SS G_CDS: 0.77 Total: -26.56 kcal Atomic # 8 Polarization: -15.05 SS G_CDS: -0.81 Total: -15.85 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -4.06 Total: 18.70 kcal Total LS contribution 3.42 Total: 3.42 kcal Total: -31.63 -4.41 -36.03 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703534766.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.240 kcal (2) G-P(sol) polarization free energy of solvation -31.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds