Wall clock time and date at job start Mon Mar 30 2020 02:24:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50706 * 109.84307 * 2 1 4 4 H 1.07998 * 119.99501 * 239.05654 * 3 2 1 5 5 C 1.37871 * 120.00436 * 59.05557 * 3 2 1 6 6 N 1.31514 * 120.00481 * 179.97438 * 5 3 2 7 7 Si 1.86803 * 119.99886 * 359.72901 * 5 3 2 8 8 H 1.48502 * 109.46964 * 270.27509 * 7 5 3 9 9 H 1.48505 * 109.47036 * 30.26897 * 7 5 3 10 10 H 1.48490 * 109.47395 * 150.27411 * 7 5 3 11 11 C 1.54177 * 109.85553 * 239.05611 * 2 1 3 12 12 C 1.55024 * 104.27970 * 242.15282 * 11 2 1 13 13 C 1.53763 * 101.89085 * 19.64934 * 12 11 2 14 14 C 1.52749 * 115.72934 * 194.59264 * 13 12 11 15 15 O 1.44436 * 85.09756 * 220.80989 * 14 13 12 16 16 C 1.44434 * 93.55628 * 23.28113 * 15 14 13 17 17 O 1.42935 * 105.32573 * 324.70647 * 13 12 11 18 18 H 1.09002 * 109.47074 * 60.69881 * 1 2 3 19 19 H 1.08998 * 109.47042 * 180.70197 * 1 2 3 20 20 H 1.09008 * 109.46772 * 300.70178 * 1 2 3 21 21 H 0.96999 * 120.00235 * 179.72806 * 6 5 3 22 22 H 1.09005 * 110.46487 * 0.85053 * 11 2 1 23 23 H 1.09000 * 110.47441 * 123.44954 * 11 2 1 24 24 H 1.08997 * 110.94899 * 137.79709 * 12 11 2 25 25 H 1.08997 * 110.94637 * 261.49723 * 12 11 2 26 26 H 1.08996 * 113.93175 * 334.84683 * 14 13 12 27 27 H 1.08994 * 113.93264 * 106.77357 * 14 13 12 28 28 H 1.09007 * 113.92765 * 222.68683 * 16 15 14 29 29 H 1.08990 * 114.06336 * 90.77462 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0416 1.4176 0.0000 4 1 2.6772 1.7622 -0.8022 5 6 1.6981 2.2745 1.0240 6 7 2.1449 3.5114 1.0243 7 14 0.5924 1.6806 2.4076 8 1 -0.8269 1.9296 2.0486 9 1 0.8016 0.2256 2.6186 10 1 0.9234 2.4144 3.6554 11 6 2.0537 -0.7456 -1.2437 12 6 2.8436 -1.9473 -0.6647 13 6 2.2714 -2.0461 0.7591 14 6 3.0682 -2.9092 1.7355 15 8 1.7767 -3.3732 2.1861 16 6 1.1215 -3.0345 0.9443 17 8 2.0214 -0.6972 1.1602 18 1 -0.3633 0.5029 -0.8962 19 1 -0.3633 -1.0276 0.0126 20 1 -0.3633 0.5247 0.8837 21 1 1.9001 4.1154 1.7427 22 1 1.2227 -1.0953 -1.8564 23 1 2.7126 -0.1010 -1.8254 24 1 2.6400 -2.8565 -1.2304 25 1 3.9126 -1.7360 -0.6413 26 1 3.6714 -3.6791 1.2545 27 1 3.6183 -2.3379 2.4832 28 1 0.1481 -2.5611 1.0728 29 1 1.1107 -3.8424 0.2128 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703534766.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:29 Heat of formation + Delta-G solvation = -66.104662 kcal Electronic energy + Delta-G solvation = -13614.855625 eV Core-core repulsion = 11311.087959 eV Total energy + Delta-G solvation = -2303.767666 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.97673 -39.02225 -34.86872 -33.09194 -32.29023 -28.68049 -27.71655 -26.98323 -24.09904 -21.52910 -20.69598 -18.94692 -17.70629 -17.13613 -16.82961 -16.37257 -15.62533 -15.27463 -14.79025 -14.54862 -14.30804 -13.91211 -13.47171 -13.01992 -12.91455 -12.68601 -12.26409 -11.84974 -11.81711 -11.25999 -11.18399 -11.06355 -10.73047 -10.64674 -10.06755 -8.38254 -6.48206 1.27263 1.36832 1.62174 2.35384 2.54524 2.92778 3.27028 3.54137 3.95156 4.04876 4.24557 4.34536 4.36388 4.48546 4.66375 4.71944 4.75945 4.83367 4.92341 5.01525 5.06403 5.18643 5.26795 5.29013 5.50537 5.63290 6.20936 6.43486 6.71593 7.28454 8.76153 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.042328 B = 0.015926 C = 0.014039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.340879 B = 1757.663813 C = 1993.992298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.180 3.820 3 C -0.517 4.517 4 H 0.044 0.956 5 C 0.030 3.970 6 N -0.939 5.939 7 Si 0.938 3.062 8 H -0.275 1.275 9 H -0.220 1.220 10 H -0.311 1.311 11 C -0.129 4.129 12 C -0.133 4.133 13 C 0.015 3.985 14 C 0.049 3.951 15 O -0.408 6.408 16 C 0.023 3.977 17 O -0.369 6.369 18 H 0.068 0.932 19 H 0.068 0.932 20 H 0.027 0.973 21 H 0.266 0.734 22 H 0.087 0.913 23 H 0.057 0.943 24 H 0.112 0.888 25 H 0.074 0.926 26 H 0.129 0.871 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.544 -14.582 -2.871 14.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.143 3.857 3 C -0.554 4.554 4 H 0.062 0.938 5 C -0.169 4.169 6 N -0.579 5.579 7 Si 0.766 3.234 8 H -0.202 1.202 9 H -0.143 1.143 10 H -0.240 1.240 11 C -0.166 4.166 12 C -0.170 4.170 13 C -0.025 4.025 14 C -0.027 4.027 15 O -0.327 6.327 16 C -0.053 4.053 17 O -0.289 6.289 18 H 0.087 0.913 19 H 0.087 0.913 20 H 0.046 0.954 21 H 0.075 0.925 22 H 0.105 0.895 23 H 0.076 0.924 24 H 0.130 0.870 25 H 0.093 0.907 26 H 0.147 0.853 27 H 0.101 0.899 28 H 0.102 0.898 29 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.601 -14.450 -2.357 14.729 hybrid contribution -0.289 0.852 0.505 1.032 sum -1.891 -13.599 -1.852 13.854 Atomic orbital electron populations 1.22494 0.97026 1.01010 1.01004 1.20238 0.91137 0.90619 0.83711 1.21343 1.31401 0.94150 1.08490 0.93786 1.25819 0.96735 0.94399 0.99936 1.70035 1.46667 1.06806 1.34388 0.86129 0.78277 0.81337 0.77625 1.20189 1.14345 1.24043 1.22841 1.00172 0.96436 0.97186 1.22927 1.00355 0.99219 0.94524 1.24691 0.95605 0.86610 0.95636 1.24170 0.87627 0.95059 0.95866 1.89654 1.22079 1.86494 1.34511 1.24642 0.97756 0.96812 0.86095 1.89043 1.85159 1.18938 1.35804 0.91269 0.91311 0.95394 0.92522 0.89485 0.92371 0.86996 0.90695 0.85344 0.89866 0.89832 0.85861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.49 8.08 71.98 0.58 -5.91 15 2 C 0.18 8.18 0.71 -11.14 -0.01 8.17 15 3 C -0.52 -29.56 8.86 25.60 0.23 -29.34 15 4 H 0.04 2.75 7.58 -2.91 -0.02 2.72 15 5 C 0.03 1.82 5.45 84.65 0.46 2.28 15 6 N -0.94 -59.85 13.96 21.45 0.30 -59.55 15 7 Si 0.94 48.07 23.90 68.60 1.64 49.71 15 8 H -0.27 -13.35 6.87 99.48 0.68 -12.66 15 9 H -0.22 -11.06 5.39 99.48 0.54 -10.52 15 10 H -0.31 -16.23 7.11 99.48 0.71 -15.52 15 11 C -0.13 -4.59 6.28 31.69 0.20 -4.39 15 12 C -0.13 -3.82 6.50 31.54 0.20 -3.61 15 13 C 0.02 0.52 1.29 -10.70 -0.01 0.50 15 14 C 0.05 1.44 8.79 71.89 0.63 2.07 15 15 O -0.41 -13.85 12.46 -144.58 -1.80 -15.65 15 16 C 0.02 0.67 8.41 71.89 0.60 1.28 15 17 O -0.37 -16.97 7.76 -144.58 -1.12 -18.10 15 18 H 0.07 2.68 8.14 -2.39 -0.02 2.66 15 19 H 0.07 2.30 6.16 -2.39 -0.01 2.29 15 20 H 0.03 1.24 3.16 -2.38 -0.01 1.23 15 21 H 0.27 15.99 8.31 -92.71 -0.77 15.22 15 22 H 0.09 2.57 7.69 -2.38 -0.02 2.55 15 23 H 0.06 2.25 7.40 -2.39 -0.02 2.23 15 24 H 0.11 2.24 7.95 -2.39 -0.02 2.23 15 25 H 0.07 2.17 8.14 -2.39 -0.02 2.15 15 26 H 0.13 2.65 8.14 -2.39 -0.02 2.63 15 27 H 0.08 2.63 8.14 -2.39 -0.02 2.61 15 28 H 0.08 2.55 6.57 -2.38 -0.02 2.53 15 29 H 0.12 2.49 8.00 -2.39 -0.02 2.47 15 Total: -1.00 -70.56 227.19 2.85 -67.72 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: 0.94 Total: 4.81 kcal Atomic # 6 Polarization: -31.83 SS G_CDS: 2.89 Total: -28.94 kcal Atomic # 7 Polarization: -59.85 SS G_CDS: 0.30 Total: -59.55 kcal Atomic # 8 Polarization: -30.83 SS G_CDS: -2.92 Total: -33.75 kcal Atomic # 14 Polarization: 48.07 SS G_CDS: 1.64 Total: 49.71 kcal Total: -70.56 2.85 -67.72 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703534766.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.611 kcal (2) G-P(sol) polarization free energy of solvation -70.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds