Wall clock time and date at job start Mon Mar 30 2020 02:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08991 * 115.56454 * 2 1 4 4 C 1.53006 * 117.49507 * 214.31128 * 2 1 3 5 5 C 1.53000 * 117.49581 * 145.69283 * 2 1 3 6 6 C 1.53002 * 117.49795 * 214.97352 * 5 2 1 7 7 C 1.52996 * 109.47267 * 226.42907 * 6 5 2 8 8 C 1.50702 * 109.46915 * 177.79104 * 7 6 5 9 9 H 1.07998 * 120.00149 * 0.02562 * 8 7 6 10 10 C 1.37884 * 119.99912 * 179.97438 * 8 7 6 11 11 N 1.31512 * 120.00024 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00026 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47174 * 180.02562 * 12 10 8 14 14 H 1.48501 * 109.46862 * 300.00468 * 12 10 8 15 15 H 1.48498 * 109.46937 * 60.00653 * 12 10 8 16 16 C 1.50705 * 117.52014 * 0.02562 * 5 2 1 17 17 O 1.20829 * 119.99755 * 327.46842 * 16 5 2 18 18 O 1.34229 * 120.00023 * 147.47494 * 16 5 2 19 19 H 1.09000 * 109.46762 * 274.31298 * 1 2 3 20 20 H 1.09000 * 109.46929 * 34.30660 * 1 2 3 21 21 H 1.08997 * 109.47431 * 154.31064 * 1 2 3 22 22 H 1.08995 * 117.49664 * 145.02216 * 4 2 1 23 23 H 1.08996 * 117.51799 * 359.97438 * 4 2 1 24 24 H 1.09008 * 109.46669 * 106.43251 * 6 5 2 25 25 H 1.08998 * 109.47052 * 346.43818 * 6 5 2 26 26 H 1.08995 * 109.47177 * 57.79519 * 7 6 5 27 27 H 1.08996 * 109.47594 * 297.79128 * 7 6 5 28 28 H 0.97004 * 119.99785 * 359.97438 * 11 10 8 29 29 H 0.96697 * 116.99935 * 180.02562 * 18 16 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9832 0.0000 4 6 2.2364 -1.1211 -0.7651 5 6 2.2364 -1.1211 0.7649 6 6 3.5490 -0.7761 1.4713 7 6 4.5915 -1.8533 1.1650 8 6 5.8999 -1.4857 1.8162 9 1 5.9798 -0.5751 2.3914 10 6 6.9947 -2.3125 1.6786 11 7 6.8973 -3.4216 0.9785 12 14 8.6167 -1.8565 2.4851 13 1 9.6285 -2.9021 2.1879 14 1 9.0839 -0.5509 1.9538 15 1 8.4273 -1.7539 3.9544 16 6 1.3724 -2.1413 1.4604 17 8 0.3029 -1.8155 1.9188 18 8 1.7908 -3.4119 1.5706 19 1 -0.3633 0.0773 1.0248 20 1 -0.3633 0.8489 -0.5792 21 1 -0.3634 -0.9260 -0.4455 22 1 3.1715 -0.8753 -1.2683 23 1 1.6115 -1.8589 -1.2681 24 1 3.3810 -0.7287 2.5473 25 1 3.9094 0.1896 1.1170 26 1 4.7308 -1.9278 0.0866 27 1 4.2486 -2.8119 1.5542 28 1 6.0551 -3.6581 0.5594 29 1 1.2020 -4.0302 2.0246 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705524227.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:30 Heat of formation + Delta-G solvation = -112.170251 kcal Electronic energy + Delta-G solvation = -12726.453989 eV Core-core repulsion = 10420.688769 eV Total energy + Delta-G solvation = -2305.765219 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.72166 -38.85679 -37.13951 -35.74703 -32.68953 -29.37178 -27.00272 -25.60643 -23.85137 -21.71837 -20.77467 -19.09192 -18.74576 -17.13081 -16.97127 -15.84044 -15.62874 -15.23819 -14.72207 -14.44261 -14.20326 -13.71843 -13.34591 -13.02191 -12.70484 -12.61532 -12.48665 -12.24548 -11.94155 -11.88239 -11.60745 -10.94722 -10.88640 -10.49948 -10.47366 -8.64556 -6.34763 1.06662 1.54196 1.62585 1.81758 2.01597 2.58093 2.62953 3.20294 3.48960 3.68892 3.89570 4.19971 4.32437 4.53615 4.67011 4.72684 4.76382 4.90159 4.93506 5.06578 5.09510 5.32766 5.40109 5.55353 5.56956 6.03501 6.24055 6.62450 6.97037 7.47016 8.76455 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.053651 B = 0.008668 C = 0.008195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.765503 B = 3229.468496 C = 3416.097209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.102 4.102 3 H 0.132 0.868 4 C -0.143 4.143 5 C -0.158 4.158 6 C -0.050 4.050 7 C 0.017 3.983 8 C -0.623 4.623 9 H 0.049 0.951 10 C -0.038 4.038 11 N -0.938 5.938 12 Si 1.116 2.884 13 H -0.284 1.284 14 H -0.267 1.267 15 H -0.272 1.272 16 C 0.524 3.476 17 O -0.533 6.533 18 O -0.511 6.511 19 H 0.062 0.938 20 H 0.085 0.915 21 H 0.047 0.953 22 H 0.105 0.895 23 H 0.107 0.893 24 H 0.046 0.954 25 H 0.075 0.925 26 H -0.004 1.004 27 H -0.005 1.005 28 H 0.256 0.744 29 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.320 5.043 -1.929 11.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.120 4.120 3 H 0.150 0.850 4 C -0.180 4.180 5 C -0.159 4.159 6 C -0.087 4.087 7 C -0.020 4.020 8 C -0.661 4.661 9 H 0.068 0.932 10 C -0.235 4.235 11 N -0.575 5.575 12 Si 0.937 3.063 13 H -0.210 1.210 14 H -0.192 1.192 15 H -0.197 1.197 16 C 0.368 3.632 17 O -0.423 6.423 18 O -0.323 6.323 19 H 0.081 0.919 20 H 0.104 0.896 21 H 0.066 0.934 22 H 0.124 0.876 23 H 0.125 0.875 24 H 0.065 0.935 25 H 0.094 0.906 26 H 0.015 0.985 27 H 0.013 0.987 28 H 0.066 0.934 29 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges -8.811 4.895 -1.793 10.238 hybrid contribution -1.921 -0.382 0.172 1.966 sum -10.733 4.513 -1.622 11.755 Atomic orbital electron populations 1.21452 0.91163 1.02282 1.02674 1.22781 0.96400 0.94259 0.98520 0.85003 1.23295 1.03325 1.01435 0.89967 1.21265 0.98580 0.99616 0.96444 1.20853 0.90037 0.99650 0.98168 1.19102 0.93522 0.94321 0.95087 1.22539 0.98070 1.09782 1.35679 0.93234 1.27376 1.06843 0.93193 0.96101 1.70903 1.28745 1.24873 1.32994 0.82952 0.71258 0.76168 0.75882 1.20980 1.19239 1.19686 1.22418 0.83601 0.81780 0.75409 1.90620 1.24010 1.80805 1.46882 1.84668 1.53554 1.20926 1.73187 0.91911 0.89614 0.93435 0.87613 0.87496 0.93479 0.90622 0.98540 0.98667 0.93433 0.71626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.87 8.60 71.98 0.62 -2.25 15 2 C -0.10 -2.76 6.05 -10.79 -0.07 -2.82 15 3 H 0.13 3.14 8.08 -2.39 -0.02 3.12 15 4 C -0.14 -4.25 9.13 30.60 0.28 -3.97 15 5 C -0.16 -5.49 1.98 -52.93 -0.11 -5.59 15 6 C -0.05 -2.06 5.08 30.59 0.16 -1.90 15 7 C 0.02 0.87 4.19 29.85 0.13 0.99 15 8 C -0.62 -35.78 9.11 25.60 0.23 -35.55 15 9 H 0.05 2.76 7.74 -2.91 -0.02 2.73 15 10 C -0.04 -2.20 5.46 84.66 0.46 -1.73 15 11 N -0.94 -58.62 13.65 21.45 0.29 -58.33 15 12 Si 1.12 50.42 29.90 68.60 2.05 52.48 15 13 H -0.28 -12.85 7.11 99.48 0.71 -12.14 15 14 H -0.27 -11.10 7.11 99.48 0.71 -10.40 15 15 H -0.27 -11.44 7.11 99.48 0.71 -10.73 15 16 C 0.52 18.44 7.32 71.24 0.52 18.96 15 17 O -0.53 -19.24 15.03 21.96 0.33 -18.91 15 18 O -0.51 -16.97 12.63 -51.40 -0.65 -17.62 15 19 H 0.06 1.72 6.80 -2.39 -0.02 1.71 15 20 H 0.09 1.58 8.14 -2.39 -0.02 1.56 15 21 H 0.05 1.17 7.88 -2.39 -0.02 1.15 15 22 H 0.11 3.22 7.91 -2.39 -0.02 3.20 15 23 H 0.11 2.87 8.05 -2.39 -0.02 2.85 15 24 H 0.05 2.00 8.12 -2.38 -0.02 1.98 15 25 H 0.08 2.95 7.94 -2.39 -0.02 2.93 15 26 H 0.00 -0.20 7.43 -2.39 -0.02 -0.22 15 27 H 0.00 -0.28 7.20 -2.39 -0.02 -0.30 15 28 H 0.26 16.25 7.22 -92.70 -0.67 15.58 15 29 H 0.42 9.29 9.10 -74.06 -0.67 8.61 15 Total: -1.00 -69.42 251.06 4.82 -64.60 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: 0.57 Total: 11.64 kcal Atomic # 6 Polarization: -36.09 SS G_CDS: 2.22 Total: -33.87 kcal Atomic # 7 Polarization: -58.62 SS G_CDS: 0.29 Total: -58.33 kcal Atomic # 8 Polarization: -36.21 SS G_CDS: -0.32 Total: -36.53 kcal Atomic # 14 Polarization: 50.42 SS G_CDS: 2.05 Total: 52.48 kcal Total: -69.42 4.82 -64.60 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705524227.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.567 kcal (2) G-P(sol) polarization free energy of solvation -69.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds