Wall clock time and date at job start Mon Mar 30 2020 02:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.53429 * 2 1 4 4 C 1.53365 * 109.50361 * 239.90569 * 2 1 3 5 5 C 1.51515 * 108.09845 * 187.79788 * 4 2 1 6 6 O 1.20757 * 121.21626 * 228.39604 * 5 4 2 7 7 C 1.51511 * 117.56562 * 48.41753 * 5 4 2 8 8 H 1.09008 * 109.73451 * 191.93272 * 7 5 4 9 9 C 1.50700 * 109.78023 * 71.25660 * 7 5 4 10 10 H 1.07997 * 120.00241 * 241.33651 * 9 7 5 11 11 C 1.37875 * 119.99830 * 61.32755 * 9 7 5 12 12 N 1.31520 * 119.99952 * 0.02562 * 11 9 7 13 13 Si 1.86800 * 120.00123 * 180.02562 * 11 9 7 14 14 H 1.48505 * 109.47018 * 60.00244 * 13 11 9 15 15 H 1.48497 * 109.47410 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.47067 * 300.00688 * 13 11 9 17 17 C 1.53360 * 108.09889 * 311.57915 * 7 5 4 18 18 H 1.09000 * 109.53989 * 172.21542 * 17 7 5 19 19 C 1.52997 * 109.50676 * 292.32018 * 17 7 5 20 20 O 1.42888 * 109.50814 * 120.10000 * 2 1 3 21 21 H 1.09002 * 109.46754 * 299.89706 * 1 2 3 22 22 H 1.08995 * 109.47546 * 59.90001 * 1 2 3 23 23 H 1.09002 * 109.47008 * 179.89966 * 1 2 3 24 24 H 1.09002 * 109.73501 * 68.15027 * 4 2 1 25 25 H 1.08993 * 109.73426 * 307.44685 * 4 2 1 26 26 H 0.96998 * 119.99835 * 179.97438 * 12 11 9 27 27 H 1.09006 * 109.47434 * 179.79990 * 19 17 7 28 28 H 1.09001 * 109.46886 * 299.79942 * 19 17 7 29 29 H 1.09002 * 109.47391 * 59.79919 * 19 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8944 1.0273 0.0000 4 6 2.0420 -0.7249 -1.2508 5 6 3.5441 -0.8775 -1.1245 6 8 4.2820 -0.5795 -2.0327 7 6 4.0865 -1.4183 0.1828 8 1 5.1671 -1.2791 0.2186 9 6 3.7579 -2.8841 0.3039 10 1 3.1392 -3.2334 1.1171 11 6 4.2472 -3.7791 -0.6238 12 7 5.0010 -3.3537 -1.6140 13 14 3.8394 -5.5959 -0.4742 14 1 2.3673 -5.7798 -0.5400 15 1 4.4820 -6.3407 -1.5866 16 1 4.3451 -6.1115 0.8234 17 6 3.4262 -0.6431 1.3295 18 1 3.6929 -1.1026 2.2813 19 6 3.9097 0.8084 1.3099 20 8 2.0071 -0.6755 1.1652 21 1 -0.3633 0.5123 0.8909 22 1 -0.3634 0.5153 -0.8890 23 1 -0.3633 -1.0277 -0.0018 24 1 1.8049 -0.1389 -2.1388 25 1 1.5769 -1.7080 -1.3227 26 1 5.3455 -3.9834 -2.2664 27 1 3.4373 1.3597 2.1230 28 1 4.9922 0.8325 1.4353 29 1 3.6439 1.2670 0.3575 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709919587.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:23 Heat of formation + Delta-G solvation = -97.393348 kcal Electronic energy + Delta-G solvation = -13442.593643 eV Core-core repulsion = 11137.469198 eV Total energy + Delta-G solvation = -2305.124445 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.33985 -36.71092 -33.47071 -32.35495 -30.73177 -28.24116 -26.96518 -23.62072 -21.92481 -20.58655 -18.07973 -16.39952 -15.70889 -15.39852 -14.59982 -14.38737 -13.84848 -13.45799 -12.80102 -12.50972 -12.20136 -11.94951 -11.75611 -11.51947 -11.21826 -11.16792 -10.92654 -10.83649 -10.61141 -10.12786 -9.63062 -9.33212 -8.68876 -8.57364 -7.93761 -6.08223 -4.17516 3.27798 3.33867 3.35831 3.54352 4.34586 4.42744 5.14960 5.33898 5.43671 5.57795 5.64856 5.77821 5.86690 5.89989 5.98129 6.12248 6.23508 6.37528 6.46982 6.59695 6.65155 6.74222 7.20652 7.34449 7.82221 8.04277 8.15032 8.85206 9.07857 9.46184 10.97206 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.036716 B = 0.014186 C = 0.013425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.417845 B = 1973.272884 C = 2085.187365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.094 3.906 3 H 0.054 0.946 4 C -0.196 4.196 5 C 0.379 3.621 6 O -0.471 6.471 7 C -0.017 4.017 8 H 0.056 0.944 9 C -0.512 4.512 10 H 0.070 0.930 11 C 0.057 3.943 12 N -0.871 5.871 13 Si 0.897 3.103 14 H -0.275 1.275 15 H -0.287 1.287 16 H -0.274 1.274 17 C 0.098 3.902 18 H 0.101 0.899 19 C -0.187 4.187 20 O -0.368 6.368 21 H 0.058 0.942 22 H 0.064 0.936 23 H 0.064 0.936 24 H 0.070 0.930 25 H 0.100 0.900 26 H 0.265 0.735 27 H 0.055 0.945 28 H 0.065 0.935 29 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.229 5.555 3.929 9.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.036 3.964 3 H 0.072 0.928 4 C -0.234 4.234 5 C 0.255 3.745 6 O -0.345 6.345 7 C -0.037 4.037 8 H 0.074 0.926 9 C -0.550 4.550 10 H 0.088 0.912 11 C -0.148 4.148 12 N -0.507 5.507 13 Si 0.725 3.275 14 H -0.200 1.200 15 H -0.213 1.213 16 H -0.199 1.199 17 C 0.040 3.960 18 H 0.119 0.881 19 C -0.245 4.245 20 O -0.287 6.287 21 H 0.077 0.923 22 H 0.083 0.917 23 H 0.083 0.917 24 H 0.089 0.911 25 H 0.118 0.882 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.847 5.567 3.401 8.761 hybrid contribution -0.035 -1.038 -0.328 1.089 sum -5.882 4.529 3.073 8.035 Atomic orbital electron populations 1.21750 0.93693 1.02849 1.01538 1.21906 0.94401 0.94699 0.85400 0.92850 1.22963 0.98890 1.03111 0.98425 1.25093 0.89015 0.70182 0.90235 1.90221 1.62419 1.39623 1.42218 1.20090 0.97624 0.96414 0.89550 0.92592 1.20776 1.32943 0.88990 1.12272 0.91171 1.25184 0.94815 0.99446 0.95310 1.70065 1.32333 1.34946 1.13347 0.86559 0.78723 0.84515 0.77751 1.20042 1.21284 1.19934 1.22353 0.80107 0.93222 1.00305 0.88131 1.22527 1.02058 0.98469 1.01430 1.87860 1.22047 1.76416 1.42381 0.92263 0.91706 0.91676 0.91133 0.88214 0.92525 0.92598 0.91576 0.92848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.57 37.16 0.36 -1.65 15 2 C 0.09 1.68 2.94 -26.54 -0.08 1.60 15 3 H 0.05 0.89 6.12 -51.93 -0.32 0.58 15 4 C -0.20 -4.07 5.57 -27.29 -0.15 -4.23 15 5 C 0.38 9.56 4.31 -28.24 -0.12 9.44 15 6 O -0.47 -13.36 17.41 6.00 0.10 -13.26 15 7 C -0.02 -0.44 2.06 -92.34 -0.19 -0.63 15 8 H 0.06 1.53 8.14 -51.92 -0.42 1.11 15 9 C -0.51 -13.84 8.28 -34.44 -0.29 -14.12 15 10 H 0.07 1.86 7.75 -52.49 -0.41 1.45 15 11 C 0.06 1.59 5.31 -17.82 -0.09 1.49 15 12 N -0.87 -25.94 12.08 55.43 0.67 -25.27 15 13 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 15 14 H -0.27 -6.42 7.11 56.52 0.40 -6.02 15 15 H -0.29 -6.82 7.11 56.52 0.40 -6.41 15 16 H -0.27 -6.36 7.11 56.52 0.40 -5.95 15 17 C 0.10 1.99 3.25 -26.55 -0.09 1.90 15 18 H 0.10 1.96 8.14 -51.93 -0.42 1.54 15 19 C -0.19 -3.22 8.68 37.16 0.32 -2.89 15 20 O -0.37 -7.41 10.00 -35.23 -0.35 -7.76 15 21 H 0.06 0.76 8.14 -51.93 -0.42 0.33 15 22 H 0.06 0.78 8.14 -51.93 -0.42 0.36 15 23 H 0.06 0.95 8.14 -51.93 -0.42 0.53 15 24 H 0.07 1.34 8.14 -51.93 -0.42 0.91 15 25 H 0.10 2.17 8.14 -51.93 -0.42 1.74 15 26 H 0.26 7.57 8.31 -40.82 -0.34 7.24 15 27 H 0.05 0.82 8.14 -51.93 -0.42 0.40 15 28 H 0.07 1.08 8.14 -51.93 -0.42 0.66 15 29 H 0.05 0.94 5.76 -51.93 -0.30 0.64 15 LS Contribution 241.52 15.07 3.64 3.64 Total: -1.00 -31.12 241.52 -5.25 -36.37 By element: Atomic # 1 Polarization: 3.05 SS G_CDS: -3.96 Total: -0.91 kcal Atomic # 6 Polarization: -8.75 SS G_CDS: -0.33 Total: -9.08 kcal Atomic # 7 Polarization: -25.94 SS G_CDS: 0.67 Total: -25.27 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: -0.25 Total: -21.02 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -31.12 -5.25 -36.37 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709919587.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.019 kcal (2) G-P(sol) polarization free energy of solvation -31.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds