Wall clock time and date at job start Mon Mar 30 2020 02:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.50571 * 2 1 4 4 C 1.53364 * 109.53492 * 239.90649 * 2 1 3 5 5 C 1.51513 * 108.09984 * 187.78407 * 4 2 1 6 6 O 1.20761 * 121.21106 * 228.39761 * 5 4 2 7 7 C 1.51509 * 117.56939 * 48.41685 * 5 4 2 8 8 H 1.08992 * 109.77578 * 71.25662 * 7 5 4 9 9 C 1.50698 * 109.73361 * 191.93585 * 7 5 4 10 10 H 1.08005 * 119.99819 * 118.64311 * 9 7 5 11 11 C 1.37875 * 120.00046 * 298.63652 * 9 7 5 12 12 N 1.31511 * 120.00192 * 0.02562 * 11 9 7 13 13 Si 1.86798 * 119.99979 * 180.02562 * 11 9 7 14 14 H 1.48506 * 109.47297 * 180.02562 * 13 11 9 15 15 H 1.48503 * 109.47261 * 60.00310 * 13 11 9 16 16 H 1.48500 * 109.47454 * 300.00304 * 13 11 9 17 17 C 1.53366 * 108.09653 * 311.58267 * 7 5 4 18 18 H 1.08998 * 109.50439 * 172.19535 * 17 7 5 19 19 C 1.52998 * 109.50536 * 292.31744 * 17 7 5 20 20 O 1.42890 * 109.50666 * 120.08803 * 2 1 3 21 21 H 1.09003 * 109.46628 * 299.91385 * 1 2 3 22 22 H 1.08998 * 109.47367 * 59.91194 * 1 2 3 23 23 H 1.09005 * 109.47174 * 179.91791 * 1 2 3 24 24 H 1.09003 * 109.73751 * 307.43632 * 4 2 1 25 25 H 1.09008 * 109.73806 * 68.08444 * 4 2 1 26 26 H 0.97001 * 119.99934 * 359.97438 * 12 11 9 27 27 H 1.09011 * 109.47208 * 59.99754 * 19 17 7 28 28 H 1.08999 * 109.47165 * 179.97438 * 19 17 7 29 29 H 1.08997 * 109.47286 * 300.00222 * 19 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0428 -0.7247 -1.2505 5 6 3.5449 -0.8767 -1.1237 6 8 4.2830 -0.5783 -2.0318 7 6 4.0872 -1.4171 0.1837 8 1 3.8500 -2.4773 0.2712 9 6 5.5809 -1.2239 0.2337 10 1 6.0204 -0.6096 1.0056 11 6 6.3864 -1.8315 -0.7059 12 7 5.8512 -2.5792 -1.6462 13 14 8.2380 -1.5926 -0.6436 14 1 8.8720 -2.3447 -1.7562 15 1 8.7585 -2.0946 0.6535 16 1 8.5557 -0.1483 -0.7787 17 6 3.4261 -0.6421 1.3302 18 1 3.6927 -1.1021 2.2817 19 6 3.9089 0.8096 1.3107 20 8 2.0071 -0.6752 1.1654 21 1 -0.3633 0.5125 0.8908 22 1 -0.3634 0.5152 -0.8892 23 1 -0.3634 -1.0277 -0.0015 24 1 1.5781 -1.7081 -1.3227 25 1 1.8050 -0.1393 -2.1388 26 1 4.8897 -2.7036 -1.6783 27 1 3.6401 1.2691 0.3594 28 1 3.4384 1.3600 2.1254 29 1 4.9917 0.8341 1.4328 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709919589.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:25 Heat of formation + Delta-G solvation = -91.759806 kcal Electronic energy + Delta-G solvation = -13470.335267 eV Core-core repulsion = 11165.455111 eV Total energy + Delta-G solvation = -2304.880156 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.60313 -37.02885 -33.81778 -32.21849 -30.79926 -28.14057 -26.64981 -23.79652 -21.88666 -20.70223 -18.42752 -16.73187 -15.99667 -15.14278 -14.77422 -14.45242 -13.89741 -13.67697 -13.03482 -12.63044 -12.31663 -12.06792 -11.83561 -11.58733 -11.29282 -11.15199 -10.90388 -10.70629 -10.32502 -10.09253 -9.80523 -8.97869 -8.65173 -8.32793 -8.11952 -6.32785 -4.06578 3.21812 3.45454 3.49731 3.66685 4.20733 4.57759 4.99809 5.18382 5.35165 5.45993 5.64301 5.72053 5.80979 5.84023 5.88623 5.97847 6.05119 6.21045 6.33363 6.51542 6.56653 6.79675 6.94931 7.16566 7.66952 8.10844 8.39087 8.74875 8.93085 9.68203 11.05662 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.056433 B = 0.012670 C = 0.011345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.044671 B = 2209.482315 C = 2467.491298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.093 3.907 3 H 0.060 0.940 4 C -0.208 4.208 5 C 0.341 3.659 6 O -0.427 6.427 7 C -0.031 4.031 8 H 0.054 0.946 9 C -0.604 4.604 10 H 0.058 0.942 11 C 0.035 3.965 12 N -0.886 5.886 13 Si 1.071 2.929 14 H -0.283 1.283 15 H -0.288 1.288 16 H -0.288 1.288 17 C 0.104 3.896 18 H 0.100 0.900 19 C -0.173 4.173 20 O -0.385 6.385 21 H 0.061 0.939 22 H 0.066 0.934 23 H 0.062 0.938 24 H 0.092 0.908 25 H 0.078 0.922 26 H 0.265 0.735 27 H 0.049 0.951 28 H 0.045 0.955 29 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.670 4.521 4.120 9.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.035 3.965 3 H 0.078 0.922 4 C -0.246 4.246 5 C 0.213 3.787 6 O -0.297 6.297 7 C -0.050 4.050 8 H 0.072 0.928 9 C -0.641 4.641 10 H 0.076 0.924 11 C -0.173 4.173 12 N -0.520 5.520 13 Si 0.899 3.101 14 H -0.208 1.208 15 H -0.215 1.215 16 H -0.215 1.215 17 C 0.047 3.953 18 H 0.118 0.882 19 C -0.230 4.230 20 O -0.305 6.305 21 H 0.080 0.920 22 H 0.085 0.915 23 H 0.081 0.919 24 H 0.110 0.890 25 H 0.097 0.903 26 H 0.076 0.924 27 H 0.068 0.932 28 H 0.064 0.936 29 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.975 4.180 2.982 7.879 hybrid contribution -1.424 0.507 0.488 1.588 sum -7.399 4.687 3.470 9.421 Atomic orbital electron populations 1.21769 0.93487 1.02705 1.01916 1.21925 0.94375 0.95413 0.84779 0.92203 1.23218 0.99063 1.02863 0.99492 1.25700 0.88415 0.74074 0.90544 1.90329 1.61822 1.36637 1.40959 1.20150 0.97968 0.96775 0.90126 0.92846 1.21569 0.89055 1.36165 1.17331 0.92361 1.25730 1.06510 0.92891 0.92179 1.70720 1.14219 1.35193 1.31844 0.83525 0.74417 0.76238 0.75927 1.20811 1.21468 1.21467 1.22201 0.78154 0.95441 0.99474 0.88198 1.22360 1.03554 0.96614 1.00450 1.87836 1.23234 1.76464 1.42975 0.92010 0.91496 0.91885 0.89018 0.90333 0.92352 0.93222 0.93615 0.89941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.57 37.16 0.36 -1.48 15 2 C 0.09 1.58 2.94 -26.54 -0.08 1.50 15 3 H 0.06 1.01 6.12 -51.93 -0.32 0.69 15 4 C -0.21 -3.94 5.69 -27.29 -0.16 -4.09 15 5 C 0.34 8.33 4.67 -28.24 -0.13 8.20 15 6 O -0.43 -12.17 14.76 6.00 0.09 -12.08 15 7 C -0.03 -0.77 2.07 -92.34 -0.19 -0.96 15 8 H 0.05 1.41 7.99 -51.93 -0.41 0.99 15 9 C -0.60 -16.69 7.60 -34.44 -0.26 -16.95 15 10 H 0.06 1.55 6.19 -52.48 -0.32 1.23 15 11 C 0.03 1.00 4.76 -17.82 -0.08 0.92 15 12 N -0.89 -27.51 12.59 55.43 0.70 -26.81 15 13 Si 1.07 25.76 29.90 -169.99 -5.08 20.68 15 14 H -0.28 -6.87 7.11 56.52 0.40 -6.47 15 15 H -0.29 -6.48 7.11 56.52 0.40 -6.08 15 16 H -0.29 -6.72 7.11 56.52 0.40 -6.32 15 17 C 0.10 2.15 3.54 -26.54 -0.09 2.06 15 18 H 0.10 1.97 8.14 -51.93 -0.42 1.55 15 19 C -0.17 -3.31 8.32 37.16 0.31 -3.00 15 20 O -0.39 -7.36 10.18 -35.23 -0.36 -7.72 15 21 H 0.06 0.73 8.14 -51.93 -0.42 0.31 15 22 H 0.07 0.73 8.14 -51.93 -0.42 0.31 15 23 H 0.06 0.80 8.14 -51.93 -0.42 0.37 15 24 H 0.09 1.64 8.14 -51.93 -0.42 1.21 15 25 H 0.08 1.37 8.14 -51.92 -0.42 0.95 15 26 H 0.27 8.24 5.84 -40.82 -0.24 8.00 15 27 H 0.05 0.98 5.75 -51.92 -0.30 0.68 15 28 H 0.04 0.74 8.14 -51.93 -0.42 0.32 15 29 H 0.08 1.67 6.20 -51.93 -0.32 1.35 15 LS Contribution 232.98 15.07 3.51 3.51 Total: -1.00 -31.98 232.98 -5.15 -37.13 By element: Atomic # 1 Polarization: 2.78 SS G_CDS: -3.67 Total: -0.89 kcal Atomic # 6 Polarization: -13.48 SS G_CDS: -0.33 Total: -13.81 kcal Atomic # 7 Polarization: -27.51 SS G_CDS: 0.70 Total: -26.81 kcal Atomic # 8 Polarization: -19.53 SS G_CDS: -0.27 Total: -19.80 kcal Atomic # 14 Polarization: 25.76 SS G_CDS: -5.08 Total: 20.68 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -31.98 -5.15 -37.13 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709919589.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.632 kcal (2) G-P(sol) polarization free energy of solvation -31.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds