Wall clock time and date at job start Mon Mar 30 2020 02:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99998 * 2 1 4 4 H 1.48496 * 109.47360 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46781 * 299.99470 * 3 2 1 6 6 H 1.48498 * 109.46975 * 59.99490 * 3 2 1 7 7 C 1.37872 * 120.00023 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00297 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00302 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47168 * 180.02562 * 9 7 2 11 11 H 1.09000 * 115.58137 * 333.17448 * 10 9 7 12 12 C 1.53980 * 117.55131 * 119.22817 * 10 9 7 13 13 H 1.09004 * 117.50655 * 214.66311 * 12 10 9 14 14 S 1.81691 * 115.37855 * 356.40542 * 12 10 9 15 15 C 1.81827 * 102.06204 * 86.86507 * 14 12 10 16 16 C 1.53479 * 107.44488 * 309.46711 * 15 14 12 17 17 C 1.52010 * 109.54518 * 76.45686 * 16 15 14 18 18 C 1.50637 * 113.88356 * 297.14499 * 17 16 15 19 19 H 1.08999 * 113.62708 * 169.73539 * 18 17 16 20 20 H 0.97000 * 120.00231 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.47036 * 59.99558 * 9 7 2 22 22 H 1.09002 * 109.47040 * 299.99822 * 9 7 2 23 23 H 1.09000 * 109.86458 * 189.97863 * 15 14 12 24 24 H 1.09006 * 109.85669 * 68.94631 * 15 14 12 25 25 H 1.09009 * 109.45568 * 316.43743 * 16 15 14 26 26 H 1.08998 * 109.46431 * 196.48561 * 16 15 14 27 27 H 1.09002 * 108.60219 * 176.00715 * 17 16 15 28 28 H 1.09005 * 108.48802 * 58.20696 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6620 0.0018 11 1 3.2184 -3.4498 -0.4412 12 6 2.2007 -4.6360 1.1936 13 1 3.1455 -5.0618 1.5315 14 16 1.0206 -4.2064 2.5066 15 6 -0.5110 -4.9842 1.9103 16 6 -0.7156 -4.5414 0.4551 17 6 0.2289 -5.3159 -0.4497 18 6 1.6871 -5.0632 -0.1684 19 1 2.3574 -5.7452 -0.6915 20 1 -0.4850 0.8400 -0.0004 21 1 0.6247 -2.5571 -0.8897 22 1 0.6241 -2.5567 0.8903 23 1 -1.3539 -4.6569 2.5191 24 1 -0.4180 -6.0692 1.9577 25 1 -0.5090 -3.4746 0.3677 26 1 -1.7457 -4.7370 0.1574 27 1 0.0219 -5.0422 -1.4843 28 1 0.0303 -6.3806 -0.3264 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709921645.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:34 Heat of formation + Delta-G solvation = 17.511695 kcal Electronic energy + Delta-G solvation = -10970.054103 eV Core-core repulsion = 9112.665186 eV Total energy + Delta-G solvation = -1857.388917 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 198.077 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.45137 -33.21450 -32.56395 -28.59874 -27.14627 -23.54917 -22.34876 -20.27414 -18.56224 -16.83222 -15.64976 -14.82606 -14.37567 -14.08194 -13.31944 -13.06351 -12.98777 -12.12759 -11.90975 -11.47883 -11.00649 -10.88527 -10.74794 -10.48301 -10.20159 -9.91872 -9.60126 -9.20516 -8.82752 -8.65045 -8.22388 -6.78772 -5.92367 -3.91332 2.38029 3.07287 3.36170 3.43649 3.47688 4.30434 4.53472 5.09810 5.25268 5.34202 5.43023 5.47438 5.53359 5.68509 5.83135 6.04950 6.16878 6.30892 6.37559 6.46857 6.65269 6.90530 7.05541 7.70441 7.93041 8.07582 8.52417 9.11879 9.69946 11.18975 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.047037 B = 0.011157 C = 0.011045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.127011 B = 2509.054487 C = 2534.563844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.889 3.111 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.284 1.284 7 C -0.508 4.508 8 H 0.053 0.947 9 C 0.028 3.972 10 C -0.096 4.096 11 H 0.098 0.902 12 C -0.142 4.142 13 H 0.115 0.885 14 S -0.204 6.204 15 C -0.085 4.085 16 C -0.157 4.157 17 C -0.081 4.081 18 C -0.143 4.143 19 H 0.090 0.910 20 H 0.258 0.742 21 H 0.022 0.978 22 H 0.065 0.935 23 H 0.097 0.903 24 H 0.073 0.927 25 H 0.123 0.877 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.239 -9.804 0.848 9.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.144 4.144 3 Si 0.717 3.283 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.547 4.547 8 H 0.071 0.929 9 C -0.009 4.009 10 C -0.117 4.117 11 H 0.116 0.884 12 C -0.271 4.271 13 H 0.133 0.867 14 S 0.026 5.974 15 C -0.234 4.234 16 C -0.195 4.195 17 C -0.118 4.118 18 C -0.163 4.163 19 H 0.108 0.892 20 H 0.068 0.932 21 H 0.040 0.960 22 H 0.082 0.918 23 H 0.115 0.885 24 H 0.091 0.909 25 H 0.141 0.859 26 H 0.085 0.915 27 H 0.089 0.911 28 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.220 -9.116 1.845 9.303 hybrid contribution 0.434 0.098 -1.063 1.152 sum 0.214 -9.018 0.782 9.054 Atomic orbital electron populations 1.69950 1.05888 1.26283 1.51446 1.24945 0.94826 0.98960 0.95620 0.86588 0.80130 0.84130 0.77458 1.19892 1.21196 1.21067 1.21239 0.92864 0.90858 1.49725 0.92920 1.19287 0.93382 0.89389 0.98801 1.23085 1.01852 0.90744 0.95991 0.88436 1.24290 1.01159 1.10855 0.90764 0.86706 1.86429 1.06294 1.73394 1.31296 1.23489 0.97924 1.01642 1.00318 1.22294 0.99069 1.05809 0.92310 1.20269 0.92066 0.99067 1.00407 1.21463 0.96927 1.01463 0.96480 0.89186 0.93204 0.96046 0.91785 0.88452 0.90872 0.85886 0.91544 0.91080 0.92811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.63 13.29 55.43 0.74 -25.89 15 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 15 3 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 15 4 H -0.27 -6.65 7.11 56.52 0.40 -6.25 15 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 15 6 H -0.28 -6.98 7.11 56.52 0.40 -6.58 15 7 C -0.51 -14.41 9.08 -34.44 -0.31 -14.72 15 8 H 0.05 1.47 7.65 -52.49 -0.40 1.07 15 9 C 0.03 0.71 3.11 -27.88 -0.09 0.63 15 10 C -0.10 -2.01 5.75 -90.72 -0.52 -2.53 15 11 H 0.10 2.02 7.96 -51.93 -0.41 1.61 15 12 C -0.14 -2.66 6.69 -26.88 -0.18 -2.84 15 13 H 0.12 1.96 8.14 -51.93 -0.42 1.54 15 14 S -0.20 -3.98 20.28 -107.50 -2.18 -6.16 15 15 C -0.09 -1.39 6.51 37.41 0.24 -1.14 15 16 C -0.16 -2.69 5.54 -26.99 -0.15 -2.84 15 17 C -0.08 -1.29 5.28 -28.42 -0.15 -1.44 15 18 C -0.14 -2.48 5.67 -93.07 -0.53 -3.01 15 19 H 0.09 1.37 8.14 -51.93 -0.42 0.94 15 20 H 0.26 7.28 8.31 -40.82 -0.34 6.94 15 21 H 0.02 0.58 7.60 -51.93 -0.39 0.18 15 22 H 0.06 1.69 4.15 -49.49 -0.21 1.49 15 23 H 0.10 1.46 8.14 -51.93 -0.42 1.03 15 24 H 0.07 1.05 8.01 -51.93 -0.42 0.63 15 25 H 0.12 2.63 3.77 -51.92 -0.20 2.43 15 26 H 0.07 0.99 8.14 -51.93 -0.42 0.57 15 27 H 0.07 1.12 8.14 -51.93 -0.42 0.69 15 28 H 0.05 0.74 8.09 -51.93 -0.42 0.32 15 LS Contribution 233.75 15.07 3.52 3.52 Total: -1.00 -29.50 233.75 -8.42 -37.92 By element: Atomic # 1 Polarization: 3.77 SS G_CDS: -3.70 Total: 0.07 kcal Atomic # 6 Polarization: -24.57 SS G_CDS: -1.78 Total: -26.35 kcal Atomic # 7 Polarization: -26.63 SS G_CDS: 0.74 Total: -25.89 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Atomic # 16 Polarization: -3.98 SS G_CDS: -2.18 Total: -6.16 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -29.50 -8.42 -37.92 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709921645.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.428 kcal (2) G-P(sol) polarization free energy of solvation -29.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds