Wall clock time and date at job start Mon Mar 30 2020 02:03:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31516 * 1
3 3 Si 1.86803 * 119.99998 * 2 1
4 4 H 1.48496 * 109.47360 * 179.97438 * 3 2 1
5 5 H 1.48501 * 109.46781 * 299.99470 * 3 2 1
6 6 H 1.48498 * 109.46975 * 59.99490 * 3 2 1
7 7 C 1.37872 * 120.00023 * 179.97438 * 2 1 3
8 8 H 1.08001 * 120.00297 * 180.02562 * 7 2 1
9 9 C 1.50703 * 120.00302 * 0.02562 * 7 2 1
10 10 C 1.53000 * 109.47168 * 180.02562 * 9 7 2
11 11 H 1.09000 * 115.58137 * 333.17448 * 10 9 7
12 12 C 1.53980 * 117.55131 * 119.22817 * 10 9 7
13 13 H 1.09004 * 117.50655 * 214.66311 * 12 10 9
14 14 S 1.81691 * 115.37855 * 356.40542 * 12 10 9
15 15 C 1.81827 * 102.06204 * 86.86507 * 14 12 10
16 16 C 1.53479 * 107.44488 * 309.46711 * 15 14 12
17 17 C 1.52010 * 109.54518 * 76.45686 * 16 15 14
18 18 C 1.50637 * 113.88356 * 297.14499 * 17 16 15
19 19 H 1.08999 * 113.62708 * 169.73539 * 18 17 16
20 20 H 0.97000 * 120.00231 * 0.02562 * 1 2 3
21 21 H 1.09001 * 109.47036 * 59.99558 * 9 7 2
22 22 H 1.09002 * 109.47040 * 299.99822 * 9 7 2
23 23 H 1.09000 * 109.86458 * 189.97863 * 15 14 12
24 24 H 1.09006 * 109.85669 * 68.94631 * 15 14 12
25 25 H 1.09009 * 109.45568 * 316.43743 * 16 15 14
26 26 H 1.08998 * 109.46431 * 196.48561 * 16 15 14
27 27 H 1.09002 * 108.60219 * 176.00715 * 17 16 15
28 28 H 1.09005 * 108.48802 * 58.20696 * 17 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6178 0.0000
4 1 3.7091 1.3465 0.0006
5 1 1.8905 2.3963 -1.2126
6 1 1.8903 2.3965 1.2124
7 6 2.0045 -1.1940 0.0005
8 1 3.0845 -1.1941 0.0010
9 6 1.2511 -2.4992 0.0005
10 6 2.2454 -3.6620 0.0018
11 1 3.2184 -3.4498 -0.4412
12 6 2.2007 -4.6360 1.1936
13 1 3.1455 -5.0618 1.5315
14 16 1.0206 -4.2064 2.5066
15 6 -0.5110 -4.9842 1.9103
16 6 -0.7156 -4.5414 0.4551
17 6 0.2289 -5.3159 -0.4497
18 6 1.6871 -5.0632 -0.1684
19 1 2.3574 -5.7452 -0.6915
20 1 -0.4850 0.8400 -0.0004
21 1 0.6247 -2.5571 -0.8897
22 1 0.6241 -2.5567 0.8903
23 1 -1.3539 -4.6569 2.5191
24 1 -0.4180 -6.0692 1.9577
25 1 -0.5090 -3.4746 0.3677
26 1 -1.7457 -4.7370 0.1574
27 1 0.0219 -5.0422 -1.4843
28 1 0.0303 -6.3806 -0.3264
RHF calculation, no. of doubly occupied orbitals= 34
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000709921645.mol2 28
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:03:34
Heat of formation + Delta-G solvation = 17.511695 kcal
Electronic energy + Delta-G solvation = -10970.054103 eV
Core-core repulsion = 9112.665186 eV
Total energy + Delta-G solvation = -1857.388917 eV
No. of doubly occupied orbitals = 34
Molecular weight
(most abundant/longest-lived isotopes) = 198.077 amu
Computer time = 0.13 seconds
Orbital eigenvalues (eV)
-38.45137 -33.21450 -32.56395 -28.59874 -27.14627 -23.54917 -22.34876 -20.27414
-18.56224 -16.83222 -15.64976 -14.82606 -14.37567 -14.08194 -13.31944 -13.06351
-12.98777 -12.12759 -11.90975 -11.47883 -11.00649 -10.88527 -10.74794 -10.48301
-10.20159 -9.91872 -9.60126 -9.20516 -8.82752 -8.65045 -8.22388 -6.78772
-5.92367 -3.91332 2.38029 3.07287 3.36170 3.43649 3.47688 4.30434
4.53472 5.09810 5.25268 5.34202 5.43023 5.47438 5.53359 5.68509
5.83135 6.04950 6.16878 6.30892 6.37559 6.46857 6.65269 6.90530
7.05541 7.70441 7.93041 8.07582 8.52417 9.11879 9.69946 11.18975
Molecular weight = 198.08amu
Principal moments of inertia in cm(-1)
A = 0.047037 B = 0.011157 C = 0.011045
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 595.127011 B = 2509.054487 C = 2534.563844
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.896 5.896
2 C 0.057 3.943
3 Si 0.889 3.111
4 H -0.274 1.274
5 H -0.286 1.286
6 H -0.284 1.284
7 C -0.508 4.508
8 H 0.053 0.947
9 C 0.028 3.972
10 C -0.096 4.096
11 H 0.098 0.902
12 C -0.142 4.142
13 H 0.115 0.885
14 S -0.204 6.204
15 C -0.085 4.085
16 C -0.157 4.157
17 C -0.081 4.081
18 C -0.143 4.143
19 H 0.090 0.910
20 H 0.258 0.742
21 H 0.022 0.978
22 H 0.065 0.935
23 H 0.097 0.903
24 H 0.073 0.927
25 H 0.123 0.877
26 H 0.066 0.934
27 H 0.071 0.929
28 H 0.053 0.947
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.239 -9.804 0.848 9.843
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.536 5.536
2 C -0.144 4.144
3 Si 0.717 3.283
4 H -0.199 1.199
5 H -0.212 1.212
6 H -0.211 1.211
7 C -0.547 4.547
8 H 0.071 0.929
9 C -0.009 4.009
10 C -0.117 4.117
11 H 0.116 0.884
12 C -0.271 4.271
13 H 0.133 0.867
14 S 0.026 5.974
15 C -0.234 4.234
16 C -0.195 4.195
17 C -0.118 4.118
18 C -0.163 4.163
19 H 0.108 0.892
20 H 0.068 0.932
21 H 0.040 0.960
22 H 0.082 0.918
23 H 0.115 0.885
24 H 0.091 0.909
25 H 0.141 0.859
26 H 0.085 0.915
27 H 0.089 0.911
28 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges -0.220 -9.116 1.845 9.303
hybrid contribution 0.434 0.098 -1.063 1.152
sum 0.214 -9.018 0.782 9.054
Atomic orbital electron populations
1.69950 1.05888 1.26283 1.51446 1.24945 0.94826 0.98960 0.95620
0.86588 0.80130 0.84130 0.77458 1.19892 1.21196 1.21067 1.21239
0.92864 0.90858 1.49725 0.92920 1.19287 0.93382 0.89389 0.98801
1.23085 1.01852 0.90744 0.95991 0.88436 1.24290 1.01159 1.10855
0.90764 0.86706 1.86429 1.06294 1.73394 1.31296 1.23489 0.97924
1.01642 1.00318 1.22294 0.99069 1.05809 0.92310 1.20269 0.92066
0.99067 1.00407 1.21463 0.96927 1.01463 0.96480 0.89186 0.93204
0.96046 0.91785 0.88452 0.90872 0.85886 0.91544 0.91080 0.92811
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -26.63 13.29 55.43 0.74 -25.89 15
2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 15
3 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 15
4 H -0.27 -6.65 7.11 56.52 0.40 -6.25 15
5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 15
6 H -0.28 -6.98 7.11 56.52 0.40 -6.58 15
7 C -0.51 -14.41 9.08 -34.44 -0.31 -14.72 15
8 H 0.05 1.47 7.65 -52.49 -0.40 1.07 15
9 C 0.03 0.71 3.11 -27.88 -0.09 0.63 15
10 C -0.10 -2.01 5.75 -90.72 -0.52 -2.53 15
11 H 0.10 2.02 7.96 -51.93 -0.41 1.61 15
12 C -0.14 -2.66 6.69 -26.88 -0.18 -2.84 15
13 H 0.12 1.96 8.14 -51.93 -0.42 1.54 15
14 S -0.20 -3.98 20.28 -107.50 -2.18 -6.16 15
15 C -0.09 -1.39 6.51 37.41 0.24 -1.14 15
16 C -0.16 -2.69 5.54 -26.99 -0.15 -2.84 15
17 C -0.08 -1.29 5.28 -28.42 -0.15 -1.44 15
18 C -0.14 -2.48 5.67 -93.07 -0.53 -3.01 15
19 H 0.09 1.37 8.14 -51.93 -0.42 0.94 15
20 H 0.26 7.28 8.31 -40.82 -0.34 6.94 15
21 H 0.02 0.58 7.60 -51.93 -0.39 0.18 15
22 H 0.06 1.69 4.15 -49.49 -0.21 1.49 15
23 H 0.10 1.46 8.14 -51.93 -0.42 1.03 15
24 H 0.07 1.05 8.01 -51.93 -0.42 0.63 15
25 H 0.12 2.63 3.77 -51.92 -0.20 2.43 15
26 H 0.07 0.99 8.14 -51.93 -0.42 0.57 15
27 H 0.07 1.12 8.14 -51.93 -0.42 0.69 15
28 H 0.05 0.74 8.09 -51.93 -0.42 0.32 15
LS Contribution 233.75 15.07 3.52 3.52
Total: -1.00 -29.50 233.75 -8.42 -37.92
By element:
Atomic # 1 Polarization: 3.77 SS G_CDS: -3.70 Total: 0.07 kcal
Atomic # 6 Polarization: -24.57 SS G_CDS: -1.78 Total: -26.35 kcal
Atomic # 7 Polarization: -26.63 SS G_CDS: 0.74 Total: -25.89 kcal
Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal
Atomic # 16 Polarization: -3.98 SS G_CDS: -2.18 Total: -6.16 kcal
Total LS contribution 3.52 Total: 3.52 kcal
Total: -29.50 -8.42 -37.92 kcal
The number of atoms in the molecule is 28
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000709921645.mol2 28
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 55.428 kcal
(2) G-P(sol) polarization free energy of solvation -29.497 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.931 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.419 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.916 kcal
(6) G-S(sol) free energy of system = (1) + (5) 17.512 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.14 seconds