Wall clock time and date at job start Mon Mar 30 2020 02:03:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31516 * 1
3 3 Si 1.86803 * 119.99998 * 2 1
4 4 H 1.48496 * 109.47360 * 179.97438 * 3 2 1
5 5 H 1.48501 * 109.46781 * 299.99470 * 3 2 1
6 6 H 1.48498 * 109.46975 * 59.99490 * 3 2 1
7 7 C 1.37872 * 120.00023 * 179.97438 * 2 1 3
8 8 H 1.08001 * 120.00297 * 180.02562 * 7 2 1
9 9 C 1.50703 * 120.00302 * 0.02562 * 7 2 1
10 10 C 1.53000 * 109.47168 * 180.02562 * 9 7 2
11 11 H 1.09000 * 115.58137 * 333.17448 * 10 9 7
12 12 C 1.53980 * 117.55131 * 119.22817 * 10 9 7
13 13 H 1.09004 * 117.50655 * 214.66311 * 12 10 9
14 14 S 1.81691 * 115.37855 * 356.40542 * 12 10 9
15 15 C 1.81827 * 102.06204 * 86.86507 * 14 12 10
16 16 C 1.53479 * 107.44488 * 309.46711 * 15 14 12
17 17 C 1.52010 * 109.54518 * 76.45686 * 16 15 14
18 18 C 1.50637 * 113.88356 * 297.14499 * 17 16 15
19 19 H 1.08999 * 113.62708 * 169.73539 * 18 17 16
20 20 H 0.97000 * 120.00231 * 0.02562 * 1 2 3
21 21 H 1.09001 * 109.47036 * 59.99558 * 9 7 2
22 22 H 1.09002 * 109.47040 * 299.99822 * 9 7 2
23 23 H 1.09000 * 109.86458 * 189.97863 * 15 14 12
24 24 H 1.09006 * 109.85669 * 68.94631 * 15 14 12
25 25 H 1.09009 * 109.45568 * 316.43743 * 16 15 14
26 26 H 1.08998 * 109.46431 * 196.48561 * 16 15 14
27 27 H 1.09002 * 108.60219 * 176.00715 * 17 16 15
28 28 H 1.09005 * 108.48802 * 58.20696 * 17 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6178 0.0000
4 1 3.7091 1.3465 0.0006
5 1 1.8905 2.3963 -1.2126
6 1 1.8903 2.3965 1.2124
7 6 2.0045 -1.1940 0.0005
8 1 3.0845 -1.1941 0.0010
9 6 1.2511 -2.4992 0.0005
10 6 2.2454 -3.6620 0.0018
11 1 3.2184 -3.4498 -0.4412
12 6 2.2007 -4.6360 1.1936
13 1 3.1455 -5.0618 1.5315
14 16 1.0206 -4.2064 2.5066
15 6 -0.5110 -4.9842 1.9103
16 6 -0.7156 -4.5414 0.4551
17 6 0.2289 -5.3159 -0.4497
18 6 1.6871 -5.0632 -0.1684
19 1 2.3574 -5.7452 -0.6915
20 1 -0.4850 0.8400 -0.0004
21 1 0.6247 -2.5571 -0.8897
22 1 0.6241 -2.5567 0.8903
23 1 -1.3539 -4.6569 2.5191
24 1 -0.4180 -6.0692 1.9577
25 1 -0.5090 -3.4746 0.3677
26 1 -1.7457 -4.7370 0.1574
27 1 0.0219 -5.0422 -1.4843
28 1 0.0303 -6.3806 -0.3264
RHF calculation, no. of doubly occupied orbitals= 34
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000709921645.mol2 28
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:03:34
Heat of formation + Delta-G solvation = 1.147596 kcal
Electronic energy + Delta-G solvation = -10970.763704 eV
Core-core repulsion = 9112.665186 eV
Total energy + Delta-G solvation = -1858.098518 eV
No. of doubly occupied orbitals = 34
Molecular weight
(most abundant/longest-lived isotopes) = 198.077 amu
Computer time = 0.14 seconds
Orbital eigenvalues (eV)
-39.93412 -35.02937 -34.28021 -30.53681 -28.52815 -25.56243 -23.75457 -21.86654
-20.06584 -18.69980 -17.43111 -16.38774 -16.23450 -15.56210 -14.79032 -14.54016
-14.43356 -14.03338 -13.51963 -13.28116 -12.78307 -12.54711 -12.41690 -12.17476
-11.71123 -11.63142 -11.35419 -10.99044 -10.55261 -10.30957 -10.20570 -8.33419
-8.10951 -6.17404 0.96544 1.39742 1.41128 1.52809 1.66267 2.44859
2.83131 3.22333 3.76664 3.84150 3.96369 4.05901 4.22777 4.33724
4.56105 4.76159 4.83661 4.93642 4.99810 5.12203 5.18233 5.34862
5.48596 5.58857 5.83226 6.03764 6.39229 6.96607 7.47399 8.99594
Molecular weight = 198.08amu
Principal moments of inertia in cm(-1)
A = 0.047037 B = 0.011157 C = 0.011045
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 595.127011 B = 2509.054487 C = 2534.563844
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.928 5.928
2 C 0.004 3.996
3 Si 0.954 3.046
4 H -0.268 1.268
5 H -0.278 1.278
6 H -0.281 1.281
7 C -0.531 4.531
8 H 0.048 0.952
9 C 0.042 3.958
10 C -0.133 4.133
11 H 0.094 0.906
12 C -0.128 4.128
13 H 0.134 0.866
14 S -0.267 6.267
15 C -0.069 4.069
16 C -0.158 4.158
17 C -0.085 4.085
18 C -0.117 4.117
19 H 0.122 0.878
20 H 0.260 0.740
21 H -0.007 1.007
22 H 0.052 0.948
23 H 0.107 0.893
24 H 0.103 0.897
25 H 0.076 0.924
26 H 0.089 0.911
27 H 0.072 0.928
28 H 0.091 0.909
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.028 -11.231 0.659 11.251
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.568 5.568
2 C -0.194 4.194
3 Si 0.779 3.221
4 H -0.192 1.192
5 H -0.204 1.204
6 H -0.207 1.207
7 C -0.569 4.569
8 H 0.066 0.934
9 C 0.004 3.996
10 C -0.154 4.154
11 H 0.112 0.888
12 C -0.257 4.257
13 H 0.152 0.848
14 S -0.037 6.037
15 C -0.216 4.216
16 C -0.196 4.196
17 C -0.122 4.122
18 C -0.136 4.136
19 H 0.140 0.860
20 H 0.069 0.931
21 H 0.012 0.988
22 H 0.070 0.930
23 H 0.125 0.875
24 H 0.121 0.879
25 H 0.094 0.906
26 H 0.108 0.892
27 H 0.090 0.910
28 H 0.109 0.891
Dipole moment (debyes) X Y Z Total
from point charges 0.054 -10.551 1.656 10.680
hybrid contribution 0.306 0.525 -1.007 1.176
sum 0.360 -10.026 0.649 10.054
Atomic orbital electron populations
1.70070 1.07294 1.27193 1.52285 1.25781 0.95729 1.02555 0.95326
0.85566 0.79044 0.79783 0.77658 1.19190 1.20350 1.20674 1.21704
0.92989 0.92760 1.49473 0.93390 1.19022 0.93528 0.90139 0.96872
1.22799 1.01237 0.91642 0.99713 0.88774 1.24359 1.01728 1.09273
0.90344 0.84831 1.86622 1.09456 1.75024 1.32585 1.23558 0.95734
1.02882 0.99476 1.22193 1.00856 1.03070 0.93474 1.20372 0.90767
1.01002 1.00062 1.21656 0.98402 0.98522 0.95063 0.85989 0.93076
0.98848 0.92997 0.87504 0.87857 0.90595 0.89250 0.90967 0.89069
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -56.46 13.29 21.45 0.28 -56.18 15
2 C 0.00 0.21 5.46 84.65 0.46 0.67 15
3 Si 0.95 45.51 29.54 68.60 2.03 47.54 15
4 H -0.27 -12.35 7.11 99.48 0.71 -11.65 15
5 H -0.28 -12.82 7.11 99.48 0.71 -12.11 15
6 H -0.28 -13.16 7.11 99.48 0.71 -12.45 15
7 C -0.53 -30.85 9.08 25.60 0.23 -30.62 15
8 H 0.05 2.74 7.65 -2.91 -0.02 2.72 15
9 C 0.04 2.16 3.11 29.85 0.09 2.25 15
10 C -0.13 -5.55 5.75 -10.86 -0.06 -5.61 15
11 H 0.09 3.92 7.96 -2.39 -0.02 3.90 15
12 C -0.13 -4.60 6.69 30.50 0.20 -4.40 15
13 H 0.13 4.25 8.14 -2.39 -0.02 4.23 15
14 S -0.27 -10.23 20.28 -56.49 -1.15 -11.38 15
15 C -0.07 -2.08 6.51 72.14 0.47 -1.61 15
16 C -0.16 -5.16 5.54 30.43 0.17 -4.99 15
17 C -0.08 -2.45 5.28 29.50 0.16 -2.30 15
18 C -0.12 -3.73 5.67 -12.38 -0.07 -3.80 15
19 H 0.12 3.18 8.14 -2.39 -0.02 3.16 15
20 H 0.26 14.95 8.31 -92.71 -0.77 14.18 15
21 H -0.01 -0.37 7.60 -2.39 -0.02 -0.39 15
22 H 0.05 2.84 4.15 -3.93 -0.02 2.83 15
23 H 0.11 3.00 8.14 -2.39 -0.02 2.98 15
24 H 0.10 2.54 8.01 -2.38 -0.02 2.52 15
25 H 0.08 3.29 3.77 -2.38 -0.01 3.28 15
26 H 0.09 2.48 8.14 -2.39 -0.02 2.46 15
27 H 0.07 2.10 8.14 -2.39 -0.02 2.08 15
28 H 0.09 2.04 8.09 -2.38 -0.02 2.02 15
Total: -1.00 -64.61 233.75 3.95 -60.67
By element:
Atomic # 1 Polarization: 8.62 SS G_CDS: 1.13 Total: 9.75 kcal
Atomic # 6 Polarization: -52.04 SS G_CDS: 1.65 Total: -50.39 kcal
Atomic # 7 Polarization: -56.46 SS G_CDS: 0.28 Total: -56.18 kcal
Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal
Atomic # 16 Polarization: -10.23 SS G_CDS: -1.15 Total: -11.38 kcal
Total: -64.61 3.95 -60.67 kcal
The number of atoms in the molecule is 28
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000709921645.mol2 28
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 61.814 kcal
(2) G-P(sol) polarization free energy of solvation -64.614 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.800 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.948 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.666 kcal
(6) G-S(sol) free energy of system = (1) + (5) 1.148 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.14 seconds