Wall clock time and date at job start Mon Mar 30 2020 02:21:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00588 * 2 1 4 4 H 1.48501 * 109.46758 * 269.72240 * 3 2 1 5 5 H 1.48499 * 109.47026 * 29.72088 * 3 2 1 6 6 H 1.48496 * 109.47474 * 149.72124 * 3 2 1 7 7 C 1.37884 * 119.99573 * 179.72306 * 2 1 3 8 8 H 1.08002 * 119.99706 * 0.27353 * 7 2 1 9 9 C 1.50699 * 119.99783 * 180.27665 * 7 2 1 10 10 C 1.53004 * 109.46847 * 179.97438 * 9 7 2 11 11 H 1.09001 * 110.36630 * 307.34783 * 10 9 7 12 12 C 1.54928 * 110.41016 * 184.99810 * 10 9 7 13 13 C 1.54950 * 101.30470 * 203.40271 * 12 10 9 14 14 H 1.08990 * 113.70665 * 155.26419 * 13 12 10 15 15 C 1.54786 * 108.49175 * 283.86644 * 13 12 10 16 16 O 1.44454 * 103.44851 * 144.55148 * 15 13 12 17 17 C 1.43833 * 106.51687 * 318.40459 * 16 15 13 18 18 C 1.54174 * 107.13266 * 29.43327 * 17 16 15 19 19 H 1.08998 * 111.75542 * 115.57098 * 18 17 16 20 20 O 1.43202 * 109.01567 * 240.38065 * 18 17 16 21 21 H 0.97004 * 119.99485 * 0.02562 * 1 2 3 22 22 H 1.08992 * 109.47047 * 299.99662 * 9 7 2 23 23 H 1.09005 * 109.46894 * 60.00237 * 9 7 2 24 24 H 1.09000 * 111.05693 * 321.41243 * 12 10 9 25 25 H 1.09003 * 111.05234 * 85.39362 * 12 10 9 26 26 H 1.08994 * 110.62094 * 263.04472 * 15 13 12 27 27 H 1.08995 * 110.62661 * 26.06136 * 15 13 12 28 28 H 1.08992 * 109.90652 * 270.05398 * 17 16 15 29 29 H 1.09005 * 109.90373 * 148.80446 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.5027 2.0428 -1.4001 5 1 1.4439 2.6543 0.6941 6 1 3.5439 1.4417 0.7059 7 6 2.0045 -1.1941 0.0058 8 1 1.4644 -2.1294 0.0058 9 6 3.5114 -1.1942 0.0121 10 6 4.0213 -2.6367 0.0183 11 1 3.5599 -3.1987 0.8304 12 6 5.5647 -2.6637 0.1514 13 6 5.8983 -4.0470 -0.4620 14 1 6.9099 -4.1167 -0.8615 15 6 5.5403 -5.1418 0.5719 16 8 5.0580 -6.2309 -0.2453 17 6 4.2337 -5.6421 -1.2664 18 6 4.7812 -4.2254 -1.5312 19 1 5.1709 -4.1257 -2.5443 20 8 3.7556 -3.2678 -1.2453 21 1 -0.4849 0.8401 -0.0004 22 1 3.8785 -0.6826 -0.8776 23 1 3.8710 -0.6782 0.9024 24 1 6.0215 -1.8592 -0.4249 25 1 5.8684 -2.6154 1.1971 26 1 6.4248 -5.4445 1.1322 27 1 4.7585 -4.7922 1.2461 28 1 3.2015 -5.5825 -0.9214 29 1 4.2893 -6.2377 -2.1776 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724652362.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:09 Heat of formation + Delta-G solvation = -93.375980 kcal Electronic energy + Delta-G solvation = -13021.731165 eV Core-core repulsion = 10716.780926 eV Total energy + Delta-G solvation = -2304.950239 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.44025 -36.80979 -33.14300 -32.19019 -30.81466 -28.47879 -26.54919 -23.49751 -22.01534 -20.52224 -19.98907 -16.75712 -16.68873 -15.72414 -15.45191 -15.06010 -14.39138 -14.28197 -13.32972 -12.85342 -12.55050 -12.17818 -11.84189 -11.51890 -11.36174 -11.09470 -10.80209 -10.67631 -10.32395 -10.08088 -9.70232 -9.53670 -9.25287 -8.83839 -8.52184 -6.01040 -3.98290 3.31442 3.38293 3.39742 3.95260 4.16392 4.46068 4.67986 4.89645 4.98153 5.16392 5.32851 5.33925 5.36875 5.50147 5.71044 5.74853 5.94149 6.03046 6.05589 6.18895 6.42127 6.53063 6.80585 7.04887 7.22800 7.67861 7.82856 8.56698 9.05652 9.59971 11.12699 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.062335 B = 0.009446 C = 0.008811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.075913 B = 2963.546476 C = 3177.190043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.065 3.935 3 Si 0.879 3.121 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.267 1.267 7 C -0.512 4.512 8 H 0.074 0.926 9 C -0.011 4.011 10 C 0.096 3.904 11 H 0.064 0.936 12 C -0.150 4.150 13 C -0.156 4.156 14 H 0.103 0.897 15 C 0.050 3.950 16 O -0.381 6.381 17 C 0.027 3.973 18 C 0.046 3.954 19 H 0.100 0.900 20 O -0.350 6.350 21 H 0.262 0.738 22 H 0.021 0.979 23 H 0.030 0.970 24 H 0.078 0.922 25 H 0.080 0.920 26 H 0.091 0.909 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.567 -6.962 -0.336 14.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.136 4.136 3 Si 0.706 3.294 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.192 1.192 7 C -0.550 4.550 8 H 0.092 0.908 9 C -0.049 4.049 10 C 0.039 3.961 11 H 0.082 0.918 12 C -0.188 4.188 13 C -0.175 4.175 14 H 0.121 0.879 15 C -0.027 4.027 16 O -0.300 6.300 17 C -0.050 4.050 18 C -0.013 4.013 19 H 0.118 0.882 20 O -0.269 6.269 21 H 0.072 0.928 22 H 0.039 0.961 23 H 0.048 0.952 24 H 0.097 0.903 25 H 0.099 0.901 26 H 0.110 0.890 27 H 0.087 0.913 28 H 0.091 0.909 29 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 12.257 -7.021 -0.428 14.132 hybrid contribution 0.466 1.080 0.028 1.176 sum 12.722 -5.941 -0.401 14.047 Atomic orbital electron populations 1.69916 1.06254 1.26760 1.51316 1.25021 0.94752 0.99013 0.94766 0.86797 0.80222 0.83820 0.78514 1.20276 1.21371 1.19164 1.21050 0.89023 0.94639 1.50283 0.90777 1.19722 0.98111 0.90020 0.97012 1.23132 0.91109 0.96494 0.85352 0.91839 1.23357 0.98324 0.95577 1.01511 1.24135 0.99986 0.96736 0.96654 0.87860 1.23667 0.99214 0.86319 0.93455 1.88885 1.67398 1.30410 1.43327 1.23839 0.95671 0.93768 0.91731 1.24000 0.88368 0.89734 0.99236 0.88187 1.88661 1.45137 1.54061 1.39011 0.92777 0.96082 0.95180 0.90337 0.90113 0.89041 0.91342 0.90908 0.89475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.30 13.96 55.43 0.77 -27.53 15 2 C 0.07 1.93 5.47 -17.82 -0.10 1.83 15 3 Si 0.88 21.78 27.47 -169.99 -4.67 17.11 15 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 15 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 15 6 H -0.27 -6.25 6.54 56.52 0.37 -5.88 15 7 C -0.51 -14.90 9.56 -34.44 -0.33 -15.23 15 8 H 0.07 2.36 7.99 -52.49 -0.42 1.94 15 9 C -0.01 -0.27 3.79 -27.88 -0.11 -0.38 15 10 C 0.10 1.94 2.90 -25.71 -0.07 1.86 15 11 H 0.06 1.31 7.15 -51.93 -0.37 0.93 15 12 C -0.15 -2.28 5.91 -24.68 -0.15 -2.43 15 13 C -0.16 -2.13 4.43 -87.24 -0.39 -2.51 15 14 H 0.10 1.17 8.14 -51.93 -0.42 0.75 15 15 C 0.05 0.67 6.94 38.10 0.26 0.94 15 16 O -0.38 -5.87 11.55 -35.23 -0.41 -6.28 15 17 C 0.03 0.40 7.46 37.77 0.28 0.69 15 18 C 0.05 0.72 4.60 -24.70 -0.11 0.61 15 19 H 0.10 1.39 8.14 -51.93 -0.42 0.97 15 20 O -0.35 -7.30 10.43 -35.23 -0.37 -7.67 15 21 H 0.26 7.67 8.31 -40.82 -0.34 7.33 15 22 H 0.02 0.51 7.57 -51.93 -0.39 0.11 15 23 H 0.03 0.70 7.20 -51.93 -0.37 0.32 15 24 H 0.08 1.17 8.07 -51.93 -0.42 0.75 15 25 H 0.08 1.07 8.06 -51.93 -0.42 0.65 15 26 H 0.09 1.00 8.14 -51.93 -0.42 0.58 15 27 H 0.07 0.98 6.61 -51.93 -0.34 0.64 15 28 H 0.07 1.21 7.92 -51.93 -0.41 0.80 15 29 H 0.09 1.11 8.14 -51.93 -0.42 0.68 15 LS Contribution 236.66 15.07 3.57 3.57 Total: -1.00 -32.05 236.66 -5.82 -37.87 By element: Atomic # 1 Polarization: 1.56 SS G_CDS: -4.01 Total: -2.44 kcal Atomic # 6 Polarization: -13.93 SS G_CDS: -0.71 Total: -14.63 kcal Atomic # 7 Polarization: -28.30 SS G_CDS: 0.77 Total: -27.53 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: -0.77 Total: -13.95 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.67 Total: 17.11 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -32.05 -5.82 -37.87 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724652362.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.507 kcal (2) G-P(sol) polarization free energy of solvation -32.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds