Wall clock time and date at job start Mon Mar 30 2020 02:21:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31522 * 1
3 3 Si 1.86793 * 119.99670 * 2 1
4 4 H 1.48494 * 109.47325 * 239.99685 * 3 2 1
5 5 H 1.48496 * 109.47425 * 0.02562 * 3 2 1
6 6 H 1.48505 * 109.47183 * 119.99880 * 3 2 1
7 7 C 1.37874 * 119.99834 * 180.02562 * 2 1 3
8 8 H 1.08003 * 119.99767 * 180.02562 * 7 2 1
9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1
10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2
11 11 H 1.08997 * 110.66478 * 51.79815 * 10 9 7
12 12 C 1.55132 * 110.73973 * 175.00042 * 10 9 7
13 13 C 1.54852 * 101.92174 * 157.54934 * 12 10 9
14 14 H 1.08999 * 113.06087 * 214.85281 * 13 12 10
15 15 C 1.54421 * 108.40455 * 88.68414 * 13 12 10
16 16 O 1.44370 * 104.95696 * 226.27649 * 15 13 12
17 17 C 1.44390 * 105.25773 * 40.66699 * 16 15 13
18 18 C 1.55493 * 103.75724 * 337.94234 * 13 12 10
19 19 H 1.09005 * 112.01862 * 233.97721 * 18 13 12
20 20 O 1.43746 * 106.82022 * 357.77060 * 18 13 12
21 21 H 0.96992 * 120.00032 * 0.02562 * 1 2 3
22 22 H 1.08993 * 109.47512 * 60.00342 * 9 7 2
23 23 H 1.09000 * 109.47247 * 300.00051 * 9 7 2
24 24 H 1.08996 * 110.93732 * 275.70602 * 12 10 9
25 25 H 1.08997 * 110.93992 * 39.38945 * 12 10 9
26 26 H 1.08997 * 110.33969 * 345.14502 * 15 13 12
27 27 H 1.08993 * 110.34055 * 107.30027 * 15 13 12
28 28 H 1.09004 * 110.35462 * 77.98467 * 17 16 15
29 29 H 1.09004 * 110.35767 * 200.17355 * 17 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 3.1029 1.6965 -1.2124
5 1 1.2841 2.7464 0.0006
6 1 3.1029 1.6965 1.2125
7 6 2.0046 -1.1940 -0.0005
8 1 3.0846 -1.1940 -0.0001
9 6 1.2511 -2.4991 -0.0005
10 6 2.2454 -3.6621 -0.0005
11 1 2.9748 -3.5445 0.8009
12 6 1.5040 -5.0188 0.1259
13 6 2.5393 -6.0057 -0.4676
14 1 2.0797 -6.8273 -1.0171
15 6 3.4661 -6.4835 0.6714
16 8 4.8018 -6.3788 0.1336
17 6 4.8161 -5.1410 -0.6098
18 6 3.4434 -5.1038 -1.3548
19 1 3.5125 -5.4745 -2.3775
20 8 2.9023 -3.7740 -1.2834
21 1 -0.4850 0.8400 -0.0004
22 1 0.6241 -2.5568 -0.8902
23 1 0.6248 -2.5571 0.8897
24 1 1.2963 -5.2534 1.1699
25 1 0.5859 -5.0173 -0.4616
26 1 3.3572 -5.8393 1.5438
27 1 3.2416 -7.5172 0.9340
28 1 4.9086 -4.2926 0.0682
29 1 5.6342 -5.1408 -1.3302
RHF calculation, no. of doubly occupied orbitals= 37
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000724652365.mol2 29
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:21:17
Heat of formation + Delta-G solvation = -97.462624 kcal
Electronic energy + Delta-G solvation = -12985.830027 eV
Core-core repulsion = 10680.702579 eV
Total energy + Delta-G solvation = -2305.127449 eV
No. of doubly occupied orbitals = 37
Molecular weight
(most abundant/longest-lived isotopes) = 198.104 amu
Computer time = 0.15 seconds
Orbital eigenvalues (eV)
-40.31001 -36.74083 -33.16303 -32.05034 -30.40896 -28.11731 -26.32223 -23.56062
-22.33649 -20.20294 -20.09500 -16.53285 -16.29605 -15.64752 -15.36493 -15.08671
-14.59046 -14.13640 -13.45559 -12.82617 -12.19731 -11.86763 -11.58193 -11.35369
-11.08106 -10.92648 -10.81130 -10.55424 -10.43515 -10.28071 -9.89936 -9.49934
-9.07159 -8.82305 -8.36157 -5.99154 -4.00308 3.36023 3.39676 3.43289
4.01977 4.32477 4.48465 4.86031 4.93209 5.01043 5.18032 5.37468
5.38629 5.46789 5.59070 5.74713 5.81936 6.01475 6.08127 6.14617
6.25858 6.56055 6.74278 6.80656 7.35195 7.59309 7.87081 7.97987
8.40090 9.03675 9.62730 11.12382
Molecular weight = 198.10amu
Principal moments of inertia in cm(-1)
A = 0.059177 B = 0.009087 C = 0.008416
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 473.043727 B = 3080.454478 C = 3326.091658
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.898 5.898
2 C 0.056 3.944
3 Si 0.894 3.106
4 H -0.276 1.276
5 H -0.288 1.288
6 H -0.277 1.277
7 C -0.514 4.514
8 H 0.056 0.944
9 C 0.028 3.972
10 C 0.084 3.916
11 H 0.058 0.942
12 C -0.148 4.148
13 C -0.159 4.159
14 H 0.096 0.904
15 C 0.050 3.950
16 O -0.379 6.379
17 C 0.020 3.980
18 C 0.045 3.955
19 H 0.109 0.891
20 O -0.347 6.347
21 H 0.261 0.739
22 H 0.027 0.973
23 H 0.032 0.968
24 H 0.076 0.924
25 H 0.078 0.922
26 H 0.064 0.936
27 H 0.089 0.911
28 H 0.070 0.930
29 H 0.092 0.908
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.910 -11.071 0.107 12.112
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.538 5.538
2 C -0.145 4.145
3 Si 0.722 3.278
4 H -0.202 1.202
5 H -0.213 1.213
6 H -0.203 1.203
7 C -0.552 4.552
8 H 0.074 0.926
9 C -0.009 4.009
10 C 0.027 3.973
11 H 0.076 0.924
12 C -0.185 4.185
13 C -0.178 4.178
14 H 0.114 0.886
15 C -0.027 4.027
16 O -0.298 6.298
17 C -0.057 4.057
18 C -0.014 4.014
19 H 0.127 0.873
20 O -0.265 6.265
21 H 0.071 0.929
22 H 0.045 0.955
23 H 0.050 0.950
24 H 0.094 0.906
25 H 0.096 0.904
26 H 0.082 0.918
27 H 0.107 0.893
28 H 0.088 0.912
29 H 0.111 0.889
Dipole moment (debyes) X Y Z Total
from point charges 4.948 -10.921 -0.013 11.990
hybrid contribution 0.252 0.881 0.122 0.925
sum 5.200 -10.040 0.109 11.307
Atomic orbital electron populations
1.69945 1.06035 1.26766 1.51047 1.24997 0.94856 0.99262 0.95351
0.86619 0.79546 0.82974 0.78654 1.20180 1.21325 1.20281 1.21125
0.93096 0.90679 1.50281 0.92553 1.19158 0.93076 0.90517 0.98113
1.23598 0.94030 0.95172 0.84521 0.92431 1.23370 0.98661 0.95432
1.01084 1.23928 0.97421 0.99193 0.97270 0.88557 1.23536 0.81759
1.01673 0.95698 1.89056 1.30394 1.40685 1.69635 1.24365 0.98772
0.87307 0.95224 1.24429 0.92179 0.85306 0.99531 0.87297 1.89105
1.72888 1.27225 1.37289 0.92936 0.95460 0.94969 0.90576 0.90375
0.91815 0.89320 0.91161 0.88930
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -27.07 13.29 55.43 0.74 -26.33 15
2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 15
3 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 15
4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 15
5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 15
6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 15
7 C -0.51 -14.76 9.05 -34.44 -0.31 -15.07 15
8 H 0.06 1.60 7.74 -52.48 -0.41 1.19 15
9 C 0.03 0.73 4.76 -27.88 -0.13 0.60 15
10 C 0.08 1.76 2.80 -25.60 -0.07 1.68 15
11 H 0.06 1.21 7.52 -51.93 -0.39 0.81 15
12 C -0.15 -2.45 5.84 -24.63 -0.14 -2.59 15
13 C -0.16 -2.29 4.25 -87.57 -0.37 -2.66 15
14 H 0.10 1.20 8.14 -51.93 -0.42 0.77 15
15 C 0.05 0.68 7.00 37.90 0.27 0.94 15
16 O -0.38 -5.83 11.65 -35.23 -0.41 -6.25 15
17 C 0.02 0.31 7.18 38.89 0.28 0.59 15
18 C 0.05 0.73 4.82 -23.67 -0.11 0.62 15
19 H 0.11 1.55 8.14 -51.93 -0.42 1.13 15
20 O -0.35 -7.36 10.83 -35.23 -0.38 -7.74 15
21 H 0.26 7.44 8.31 -40.82 -0.34 7.10 15
22 H 0.03 0.76 8.14 -51.93 -0.42 0.34 15
23 H 0.03 0.85 8.14 -51.93 -0.42 0.43 15
24 H 0.08 1.12 7.69 -51.93 -0.40 0.72 15
25 H 0.08 1.31 8.08 -51.93 -0.42 0.89 15
26 H 0.06 0.87 7.50 -51.93 -0.39 0.48 15
27 H 0.09 0.98 8.14 -51.93 -0.42 0.56 15
28 H 0.07 1.16 7.31 -51.93 -0.38 0.78 15
29 H 0.09 1.23 8.14 -51.93 -0.42 0.81 15
LS Contribution 240.78 15.07 3.63 3.63
Total: -1.00 -31.00 240.78 -6.20 -37.20
By element:
Atomic # 1 Polarization: 0.93 SS G_CDS: -4.06 Total: -3.12 kcal
Atomic # 6 Polarization: -13.67 SS G_CDS: -0.70 Total: -14.37 kcal
Atomic # 7 Polarization: -27.07 SS G_CDS: 0.74 Total: -26.33 kcal
Atomic # 8 Polarization: -13.19 SS G_CDS: -0.79 Total: -13.99 kcal
Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal
Total LS contribution 3.63 Total: 3.63 kcal
Total: -31.00 -6.20 -37.20 kcal
The number of atoms in the molecule is 29
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000724652365.mol2 29
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -60.260 kcal
(2) G-P(sol) polarization free energy of solvation -30.999 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.259 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.203 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.203 kcal
(6) G-S(sol) free energy of system = (1) + (5) -97.463 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.15 seconds