Wall clock time and date at job start Mon Mar 30 2020 02:21:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31522 * 1
3 3 Si 1.86793 * 119.99670 * 2 1
4 4 H 1.48494 * 109.47325 * 239.99685 * 3 2 1
5 5 H 1.48496 * 109.47425 * 0.02562 * 3 2 1
6 6 H 1.48505 * 109.47183 * 119.99880 * 3 2 1
7 7 C 1.37874 * 119.99834 * 180.02562 * 2 1 3
8 8 H 1.08003 * 119.99767 * 180.02562 * 7 2 1
9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1
10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2
11 11 H 1.08997 * 110.66478 * 51.79815 * 10 9 7
12 12 C 1.55132 * 110.73973 * 175.00042 * 10 9 7
13 13 C 1.54852 * 101.92174 * 157.54934 * 12 10 9
14 14 H 1.08999 * 113.06087 * 214.85281 * 13 12 10
15 15 C 1.54421 * 108.40455 * 88.68414 * 13 12 10
16 16 O 1.44370 * 104.95696 * 226.27649 * 15 13 12
17 17 C 1.44390 * 105.25773 * 40.66699 * 16 15 13
18 18 C 1.55493 * 103.75724 * 337.94234 * 13 12 10
19 19 H 1.09005 * 112.01862 * 233.97721 * 18 13 12
20 20 O 1.43746 * 106.82022 * 357.77060 * 18 13 12
21 21 H 0.96992 * 120.00032 * 0.02562 * 1 2 3
22 22 H 1.08993 * 109.47512 * 60.00342 * 9 7 2
23 23 H 1.09000 * 109.47247 * 300.00051 * 9 7 2
24 24 H 1.08996 * 110.93732 * 275.70602 * 12 10 9
25 25 H 1.08997 * 110.93992 * 39.38945 * 12 10 9
26 26 H 1.08997 * 110.33969 * 345.14502 * 15 13 12
27 27 H 1.08993 * 110.34055 * 107.30027 * 15 13 12
28 28 H 1.09004 * 110.35462 * 77.98467 * 17 16 15
29 29 H 1.09004 * 110.35767 * 200.17355 * 17 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 3.1029 1.6965 -1.2124
5 1 1.2841 2.7464 0.0006
6 1 3.1029 1.6965 1.2125
7 6 2.0046 -1.1940 -0.0005
8 1 3.0846 -1.1940 -0.0001
9 6 1.2511 -2.4991 -0.0005
10 6 2.2454 -3.6621 -0.0005
11 1 2.9748 -3.5445 0.8009
12 6 1.5040 -5.0188 0.1259
13 6 2.5393 -6.0057 -0.4676
14 1 2.0797 -6.8273 -1.0171
15 6 3.4661 -6.4835 0.6714
16 8 4.8018 -6.3788 0.1336
17 6 4.8161 -5.1410 -0.6098
18 6 3.4434 -5.1038 -1.3548
19 1 3.5125 -5.4745 -2.3775
20 8 2.9023 -3.7740 -1.2834
21 1 -0.4850 0.8400 -0.0004
22 1 0.6241 -2.5568 -0.8902
23 1 0.6248 -2.5571 0.8897
24 1 1.2963 -5.2534 1.1699
25 1 0.5859 -5.0173 -0.4616
26 1 3.3572 -5.8393 1.5438
27 1 3.2416 -7.5172 0.9340
28 1 4.9086 -4.2926 0.0682
29 1 5.6342 -5.1408 -1.3302
RHF calculation, no. of doubly occupied orbitals= 37
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000724652365.mol2 29
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:21:16
Heat of formation + Delta-G solvation = -119.013603 kcal
Electronic energy + Delta-G solvation = -12986.764548 eV
Core-core repulsion = 10680.702579 eV
Total energy + Delta-G solvation = -2306.061969 eV
No. of doubly occupied orbitals = 37
Molecular weight
(most abundant/longest-lived isotopes) = 198.104 amu
Computer time = 0.17 seconds
Orbital eigenvalues (eV)
-41.62303 -38.11252 -35.27626 -33.44759 -32.16643 -29.49465 -27.96220 -25.22086
-23.84198 -21.73777 -21.45345 -18.55222 -17.70950 -17.10275 -16.62846 -16.52826
-16.36366 -15.56140 -14.99359 -14.13677 -14.05766 -13.57089 -13.39020 -12.97972
-12.71036 -12.61622 -12.28485 -12.09597 -11.86306 -11.80991 -11.56699 -11.08649
-10.96227 -10.59237 -10.34146 -8.21259 -6.30940 1.38738 1.42084 1.50027
2.40578 2.78277 3.05181 3.14105 3.61982 3.73306 3.79935 3.96030
4.16887 4.20143 4.22763 4.46675 4.70184 4.80206 4.86341 4.90365
4.92146 5.04632 5.15740 5.34739 5.46755 5.68789 5.76610 6.12976
6.26949 6.81322 7.36801 8.90335
Molecular weight = 198.10amu
Principal moments of inertia in cm(-1)
A = 0.059177 B = 0.009087 C = 0.008416
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 473.043727 B = 3080.454478 C = 3326.091658
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.932 5.932
2 C 0.002 3.998
3 Si 0.963 3.037
4 H -0.272 1.272
5 H -0.280 1.280
6 H -0.266 1.266
7 C -0.537 4.537
8 H 0.052 0.948
9 C 0.032 3.968
10 C 0.086 3.914
11 H 0.054 0.946
12 C -0.141 4.141
13 C -0.147 4.147
14 H 0.126 0.874
15 C 0.048 3.952
16 O -0.385 6.385
17 C 0.023 3.977
18 C 0.033 3.967
19 H 0.131 0.869
20 O -0.381 6.381
21 H 0.265 0.735
22 H -0.004 1.004
23 H 0.017 0.983
24 H 0.096 0.904
25 H 0.072 0.928
26 H 0.059 0.941
27 H 0.121 0.879
28 H 0.051 0.949
29 H 0.112 0.888
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.862 -12.052 0.155 13.403
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.572 5.572
2 C -0.196 4.196
3 Si 0.788 3.212
4 H -0.197 1.197
5 H -0.205 1.205
6 H -0.190 1.190
7 C -0.575 4.575
8 H 0.071 0.929
9 C -0.005 4.005
10 C 0.029 3.971
11 H 0.072 0.928
12 C -0.178 4.178
13 C -0.166 4.166
14 H 0.144 0.856
15 C -0.029 4.029
16 O -0.304 6.304
17 C -0.054 4.054
18 C -0.025 4.025
19 H 0.149 0.851
20 O -0.300 6.300
21 H 0.073 0.927
22 H 0.014 0.986
23 H 0.035 0.965
24 H 0.114 0.886
25 H 0.091 0.909
26 H 0.077 0.923
27 H 0.139 0.861
28 H 0.069 0.931
29 H 0.130 0.870
Dipole moment (debyes) X Y Z Total
from point charges 5.908 -11.921 0.040 13.304
hybrid contribution -0.054 1.160 0.087 1.165
sum 5.854 -10.761 0.128 12.251
Atomic orbital electron populations
1.70064 1.07599 1.27895 1.51685 1.25913 0.95797 1.03161 0.94725
0.85525 0.78347 0.78266 0.79073 1.19681 1.20474 1.19043 1.21515
0.93204 0.92317 1.50462 0.92930 1.18994 0.93585 0.92128 0.95786
1.23303 0.93371 0.95632 0.84754 0.92786 1.23283 0.98562 0.93406
1.02578 1.23950 0.96388 0.98954 0.97261 0.85620 1.23701 0.80645
1.03536 0.94971 1.89059 1.31428 1.40257 1.69673 1.24304 0.99019
0.86886 0.95155 1.24781 0.92832 0.83507 1.01407 0.85137 1.89038
1.73460 1.30459 1.37065 0.92665 0.98550 0.96472 0.88602 0.90891
0.92299 0.86099 0.93077 0.87004
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -57.19 13.29 21.45 0.28 -56.91 15
2 C 0.00 0.10 5.46 84.65 0.46 0.57 15
3 Si 0.96 45.33 29.54 68.60 2.03 47.36 15
4 H -0.27 -12.50 7.11 99.48 0.71 -11.79 15
5 H -0.28 -12.70 7.11 99.48 0.71 -11.99 15
6 H -0.27 -11.93 7.11 99.48 0.71 -11.22 15
7 C -0.54 -31.59 9.05 25.60 0.23 -31.35 15
8 H 0.05 3.05 7.74 -2.91 -0.02 3.03 15
9 C 0.03 1.72 4.76 29.85 0.14 1.86 15
10 C 0.09 3.66 2.80 31.33 0.09 3.74 15
11 H 0.05 2.30 7.52 -2.39 -0.02 2.28 15
12 C -0.14 -4.48 5.84 31.96 0.19 -4.30 15
13 C -0.15 -3.81 4.25 -8.82 -0.04 -3.85 15
14 H 0.13 2.58 8.14 -2.39 -0.02 2.56 15
15 C 0.05 1.14 7.00 72.46 0.51 1.65 15
16 O -0.39 -10.83 11.65 -148.98 -1.74 -12.57 15
17 C 0.02 0.68 7.18 73.10 0.52 1.20 15
18 C 0.03 1.02 4.82 32.57 0.16 1.17 15
19 H 0.13 3.39 8.14 -2.38 -0.02 3.37 15
20 O -0.38 -16.20 10.83 -148.98 -1.61 -17.81 15
21 H 0.26 15.24 8.31 -92.71 -0.77 14.47 15
22 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 15
23 H 0.02 0.95 8.14 -2.39 -0.02 0.93 15
24 H 0.10 2.65 7.69 -2.39 -0.02 2.63 15
25 H 0.07 2.40 8.08 -2.39 -0.02 2.38 15
26 H 0.06 1.47 7.50 -2.39 -0.02 1.46 15
27 H 0.12 2.14 8.14 -2.39 -0.02 2.12 15
28 H 0.05 1.67 7.31 -2.39 -0.02 1.65 15
29 H 0.11 2.75 8.14 -2.38 -0.02 2.73 15
Total: -1.00 -67.22 240.78 2.34 -64.87
By element:
Atomic # 1 Polarization: 3.23 SS G_CDS: 1.12 Total: 4.35 kcal
Atomic # 6 Polarization: -31.56 SS G_CDS: 2.26 Total: -29.30 kcal
Atomic # 7 Polarization: -57.19 SS G_CDS: 0.28 Total: -56.91 kcal
Atomic # 8 Polarization: -27.03 SS G_CDS: -3.35 Total: -30.38 kcal
Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal
Total: -67.22 2.34 -64.87 kcal
The number of atoms in the molecule is 29
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000724652365.mol2 29
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -54.140 kcal
(2) G-P(sol) polarization free energy of solvation -67.218 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.358 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.344 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.874 kcal
(6) G-S(sol) free energy of system = (1) + (5) -119.014 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.17 seconds