Wall clock time and date at job start Mon Mar 30 2020 02:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99670 * 2 1 4 4 H 1.48494 * 109.47325 * 239.99685 * 3 2 1 5 5 H 1.48496 * 109.47425 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47183 * 119.99880 * 3 2 1 7 7 C 1.37874 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 H 1.08997 * 110.66478 * 51.79815 * 10 9 7 12 12 C 1.55132 * 110.73973 * 175.00042 * 10 9 7 13 13 C 1.54852 * 101.92174 * 157.54934 * 12 10 9 14 14 H 1.08999 * 113.06087 * 214.85281 * 13 12 10 15 15 C 1.54421 * 108.40455 * 88.68414 * 13 12 10 16 16 O 1.44370 * 104.95696 * 226.27649 * 15 13 12 17 17 C 1.44390 * 105.25773 * 40.66699 * 16 15 13 18 18 C 1.55493 * 103.75724 * 337.94234 * 13 12 10 19 19 H 1.09005 * 112.01862 * 233.97721 * 18 13 12 20 20 O 1.43746 * 106.82022 * 357.77060 * 18 13 12 21 21 H 0.96992 * 120.00032 * 0.02562 * 1 2 3 22 22 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 23 23 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 24 24 H 1.08996 * 110.93732 * 275.70602 * 12 10 9 25 25 H 1.08997 * 110.93992 * 39.38945 * 12 10 9 26 26 H 1.08997 * 110.33969 * 345.14502 * 15 13 12 27 27 H 1.08993 * 110.34055 * 107.30027 * 15 13 12 28 28 H 1.09004 * 110.35462 * 77.98467 * 17 16 15 29 29 H 1.09004 * 110.35767 * 200.17355 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 1 2.9748 -3.5445 0.8009 12 6 1.5040 -5.0188 0.1259 13 6 2.5393 -6.0057 -0.4676 14 1 2.0797 -6.8273 -1.0171 15 6 3.4661 -6.4835 0.6714 16 8 4.8018 -6.3788 0.1336 17 6 4.8161 -5.1410 -0.6098 18 6 3.4434 -5.1038 -1.3548 19 1 3.5125 -5.4745 -2.3775 20 8 2.9023 -3.7740 -1.2834 21 1 -0.4850 0.8400 -0.0004 22 1 0.6241 -2.5568 -0.8902 23 1 0.6248 -2.5571 0.8897 24 1 1.2963 -5.2534 1.1699 25 1 0.5859 -5.0173 -0.4616 26 1 3.3572 -5.8393 1.5438 27 1 3.2416 -7.5172 0.9340 28 1 4.9086 -4.2926 0.0682 29 1 5.6342 -5.1408 -1.3302 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724652365.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:16 Heat of formation + Delta-G solvation = -119.013603 kcal Electronic energy + Delta-G solvation = -12986.764548 eV Core-core repulsion = 10680.702579 eV Total energy + Delta-G solvation = -2306.061969 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.62303 -38.11252 -35.27626 -33.44759 -32.16643 -29.49465 -27.96220 -25.22086 -23.84198 -21.73777 -21.45345 -18.55222 -17.70950 -17.10275 -16.62846 -16.52826 -16.36366 -15.56140 -14.99359 -14.13677 -14.05766 -13.57089 -13.39020 -12.97972 -12.71036 -12.61622 -12.28485 -12.09597 -11.86306 -11.80991 -11.56699 -11.08649 -10.96227 -10.59237 -10.34146 -8.21259 -6.30940 1.38738 1.42084 1.50027 2.40578 2.78277 3.05181 3.14105 3.61982 3.73306 3.79935 3.96030 4.16887 4.20143 4.22763 4.46675 4.70184 4.80206 4.86341 4.90365 4.92146 5.04632 5.15740 5.34739 5.46755 5.68789 5.76610 6.12976 6.26949 6.81322 7.36801 8.90335 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.059177 B = 0.009087 C = 0.008416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 473.043727 B = 3080.454478 C = 3326.091658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.963 3.037 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.266 1.266 7 C -0.537 4.537 8 H 0.052 0.948 9 C 0.032 3.968 10 C 0.086 3.914 11 H 0.054 0.946 12 C -0.141 4.141 13 C -0.147 4.147 14 H 0.126 0.874 15 C 0.048 3.952 16 O -0.385 6.385 17 C 0.023 3.977 18 C 0.033 3.967 19 H 0.131 0.869 20 O -0.381 6.381 21 H 0.265 0.735 22 H -0.004 1.004 23 H 0.017 0.983 24 H 0.096 0.904 25 H 0.072 0.928 26 H 0.059 0.941 27 H 0.121 0.879 28 H 0.051 0.949 29 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.862 -12.052 0.155 13.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.196 4.196 3 Si 0.788 3.212 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.190 1.190 7 C -0.575 4.575 8 H 0.071 0.929 9 C -0.005 4.005 10 C 0.029 3.971 11 H 0.072 0.928 12 C -0.178 4.178 13 C -0.166 4.166 14 H 0.144 0.856 15 C -0.029 4.029 16 O -0.304 6.304 17 C -0.054 4.054 18 C -0.025 4.025 19 H 0.149 0.851 20 O -0.300 6.300 21 H 0.073 0.927 22 H 0.014 0.986 23 H 0.035 0.965 24 H 0.114 0.886 25 H 0.091 0.909 26 H 0.077 0.923 27 H 0.139 0.861 28 H 0.069 0.931 29 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 5.908 -11.921 0.040 13.304 hybrid contribution -0.054 1.160 0.087 1.165 sum 5.854 -10.761 0.128 12.251 Atomic orbital electron populations 1.70064 1.07599 1.27895 1.51685 1.25913 0.95797 1.03161 0.94725 0.85525 0.78347 0.78266 0.79073 1.19681 1.20474 1.19043 1.21515 0.93204 0.92317 1.50462 0.92930 1.18994 0.93585 0.92128 0.95786 1.23303 0.93371 0.95632 0.84754 0.92786 1.23283 0.98562 0.93406 1.02578 1.23950 0.96388 0.98954 0.97261 0.85620 1.23701 0.80645 1.03536 0.94971 1.89059 1.31428 1.40257 1.69673 1.24304 0.99019 0.86886 0.95155 1.24781 0.92832 0.83507 1.01407 0.85137 1.89038 1.73460 1.30459 1.37065 0.92665 0.98550 0.96472 0.88602 0.90891 0.92299 0.86099 0.93077 0.87004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.19 13.29 21.45 0.28 -56.91 15 2 C 0.00 0.10 5.46 84.65 0.46 0.57 15 3 Si 0.96 45.33 29.54 68.60 2.03 47.36 15 4 H -0.27 -12.50 7.11 99.48 0.71 -11.79 15 5 H -0.28 -12.70 7.11 99.48 0.71 -11.99 15 6 H -0.27 -11.93 7.11 99.48 0.71 -11.22 15 7 C -0.54 -31.59 9.05 25.60 0.23 -31.35 15 8 H 0.05 3.05 7.74 -2.91 -0.02 3.03 15 9 C 0.03 1.72 4.76 29.85 0.14 1.86 15 10 C 0.09 3.66 2.80 31.33 0.09 3.74 15 11 H 0.05 2.30 7.52 -2.39 -0.02 2.28 15 12 C -0.14 -4.48 5.84 31.96 0.19 -4.30 15 13 C -0.15 -3.81 4.25 -8.82 -0.04 -3.85 15 14 H 0.13 2.58 8.14 -2.39 -0.02 2.56 15 15 C 0.05 1.14 7.00 72.46 0.51 1.65 15 16 O -0.39 -10.83 11.65 -148.98 -1.74 -12.57 15 17 C 0.02 0.68 7.18 73.10 0.52 1.20 15 18 C 0.03 1.02 4.82 32.57 0.16 1.17 15 19 H 0.13 3.39 8.14 -2.38 -0.02 3.37 15 20 O -0.38 -16.20 10.83 -148.98 -1.61 -17.81 15 21 H 0.26 15.24 8.31 -92.71 -0.77 14.47 15 22 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 15 23 H 0.02 0.95 8.14 -2.39 -0.02 0.93 15 24 H 0.10 2.65 7.69 -2.39 -0.02 2.63 15 25 H 0.07 2.40 8.08 -2.39 -0.02 2.38 15 26 H 0.06 1.47 7.50 -2.39 -0.02 1.46 15 27 H 0.12 2.14 8.14 -2.39 -0.02 2.12 15 28 H 0.05 1.67 7.31 -2.39 -0.02 1.65 15 29 H 0.11 2.75 8.14 -2.38 -0.02 2.73 15 Total: -1.00 -67.22 240.78 2.34 -64.87 By element: Atomic # 1 Polarization: 3.23 SS G_CDS: 1.12 Total: 4.35 kcal Atomic # 6 Polarization: -31.56 SS G_CDS: 2.26 Total: -29.30 kcal Atomic # 7 Polarization: -57.19 SS G_CDS: 0.28 Total: -56.91 kcal Atomic # 8 Polarization: -27.03 SS G_CDS: -3.35 Total: -30.38 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -67.22 2.34 -64.87 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724652365.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.140 kcal (2) G-P(sol) polarization free energy of solvation -67.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds