Wall clock time and date at job start Mon Mar 30 2020 02:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86796 * 120.00414 * 2 1 4 4 H 1.48502 * 109.47287 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47244 * 300.00503 * 3 2 1 6 6 H 1.48506 * 109.46930 * 60.00472 * 3 2 1 7 7 C 1.37878 * 119.99525 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99801 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00315 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47456 * 180.02562 * 9 7 2 11 11 H 1.08993 * 109.99940 * 306.34399 * 10 9 7 12 12 C 1.55744 * 110.01511 * 184.99801 * 10 9 7 13 13 C 1.52432 * 102.82756 * 246.22718 * 12 10 9 14 14 H 1.08993 * 113.25239 * 89.90633 * 13 12 10 15 15 C 1.52569 * 119.69515 * 226.72025 * 13 12 10 16 16 O 1.45619 * 103.52146 * 146.12343 * 15 13 12 17 17 C 1.45539 * 109.07274 * 333.92459 * 16 15 13 18 18 C 1.48214 * 105.37012 * 356.01337 * 17 16 15 19 19 H 1.09002 * 105.00807 * 286.98232 * 18 17 16 20 20 O 1.37431 * 135.68170 * 155.72706 * 18 17 16 21 21 H 0.97004 * 119.99433 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47431 * 60.00391 * 9 7 2 23 23 H 1.09008 * 109.47166 * 300.00157 * 9 7 2 24 24 H 1.09001 * 110.73758 * 127.89371 * 12 10 9 25 25 H 1.08997 * 110.74213 * 4.56335 * 12 10 9 26 26 H 1.09004 * 110.61297 * 264.63529 * 15 13 12 27 27 H 1.09004 * 110.61456 * 27.46224 * 15 13 12 28 28 H 1.09004 * 110.26126 * 237.04394 * 17 16 15 29 29 H 1.08993 * 110.26959 * 114.99792 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8906 2.3963 1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2450 -3.6622 -0.0005 11 1 2.9486 -3.5511 -0.8255 12 6 1.4833 -5.0146 -0.1280 13 6 1.7487 -5.6807 1.2171 14 1 1.0008 -5.4387 1.9721 15 6 2.1822 -7.1427 1.2641 16 8 3.0802 -7.1949 2.4093 17 6 3.6636 -5.8778 2.6166 18 6 3.1637 -5.0460 1.4964 19 1 3.7100 -5.3949 0.6201 20 8 2.9644 -3.7033 1.2814 21 1 -0.4849 0.8401 0.0004 22 1 0.6239 -2.5568 -0.8903 23 1 0.6245 -2.5571 0.8897 24 1 1.8923 -5.6127 -0.9423 25 1 0.4161 -4.8446 -0.2707 26 1 1.3218 -7.7932 1.4211 27 1 2.7072 -7.4169 0.3490 28 1 4.7515 -5.9378 2.5862 29 1 3.3341 -5.4648 3.5700 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724652366.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:19 Heat of formation + Delta-G solvation = -88.607022 kcal Electronic energy + Delta-G solvation = -12888.825375 eV Core-core repulsion = 10584.081934 eV Total energy + Delta-G solvation = -2304.743441 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.13861 -38.62131 -35.35959 -33.64748 -32.23857 -30.02465 -28.27081 -25.29836 -22.72359 -22.51054 -21.58274 -18.75434 -18.09866 -17.20121 -16.76761 -16.55469 -16.16626 -15.47375 -14.83688 -14.40537 -14.18854 -13.55976 -13.45225 -13.27324 -12.97452 -12.64892 -12.58576 -12.22480 -11.91870 -11.47850 -11.35737 -11.05321 -10.77846 -10.60250 -10.28805 -8.22427 -6.31672 1.38256 1.39326 1.52764 2.17918 2.40364 2.74974 3.11196 3.28025 3.71708 3.81774 4.01031 4.15842 4.21812 4.36265 4.39825 4.68674 4.72845 4.76573 4.80399 4.85743 5.01845 5.15660 5.36167 5.56104 5.58639 5.75080 6.06547 6.25731 6.81072 7.36339 8.89602 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.071179 B = 0.008331 C = 0.007803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 393.281632 B = 3360.049336 C = 3587.465730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.001 3.999 3 Si 0.964 3.036 4 H -0.266 1.266 5 H -0.274 1.274 6 H -0.279 1.279 7 C -0.534 4.534 8 H 0.053 0.947 9 C 0.027 3.973 10 C 0.086 3.914 11 H 0.072 0.928 12 C -0.125 4.125 13 C -0.181 4.181 14 H 0.087 0.913 15 C 0.067 3.933 16 O -0.392 6.392 17 C 0.088 3.912 18 C 0.017 3.983 19 H 0.034 0.966 20 O -0.357 6.357 21 H 0.264 0.736 22 H 0.022 0.978 23 H -0.005 1.005 24 H 0.102 0.898 25 H 0.080 0.920 26 H 0.111 0.889 27 H 0.084 0.916 28 H 0.107 0.893 29 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.915 -12.306 0.937 13.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.196 4.196 3 Si 0.789 3.211 4 H -0.190 1.190 5 H -0.199 1.199 6 H -0.205 1.205 7 C -0.572 4.572 8 H 0.072 0.928 9 C -0.010 4.010 10 C 0.030 3.970 11 H 0.090 0.910 12 C -0.162 4.162 13 C -0.200 4.200 14 H 0.105 0.895 15 C -0.008 4.008 16 O -0.312 6.312 17 C 0.011 3.989 18 C -0.043 4.043 19 H 0.052 0.948 20 O -0.276 6.276 21 H 0.073 0.927 22 H 0.040 0.960 23 H 0.013 0.987 24 H 0.120 0.880 25 H 0.098 0.902 26 H 0.129 0.871 27 H 0.103 0.897 28 H 0.125 0.875 29 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.887 -12.211 1.156 13.203 hybrid contribution -0.067 1.280 -0.227 1.302 sum 4.820 -10.930 0.929 11.982 Atomic orbital electron populations 1.70076 1.07607 1.27761 1.51875 1.25910 0.95786 1.03183 0.94761 0.85411 0.78943 0.78876 0.77896 1.19027 1.19899 1.20478 1.21564 0.93266 0.92235 1.50151 0.92834 1.19156 0.93603 0.92301 0.95912 1.24112 0.93142 0.96094 0.83660 0.90981 1.22535 1.01896 0.94756 0.97051 1.24050 0.99376 0.97449 0.99107 0.89505 1.22997 0.93852 0.94181 0.89765 1.89278 1.62336 1.28966 1.50628 1.21646 0.98990 0.81709 0.96511 1.22135 0.96870 0.84963 1.00370 0.94786 1.88320 1.76599 1.21154 1.41484 0.92685 0.96030 0.98658 0.87968 0.90171 0.87070 0.89742 0.87530 0.90381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.99 13.29 21.45 0.28 -56.70 15 2 C 0.00 0.07 5.46 84.66 0.46 0.53 15 3 Si 0.96 45.27 29.54 68.60 2.03 47.30 15 4 H -0.27 -12.11 7.11 99.48 0.71 -11.41 15 5 H -0.27 -12.30 7.11 99.48 0.71 -11.59 15 6 H -0.28 -12.82 7.11 99.48 0.71 -12.11 15 7 C -0.53 -31.23 8.97 25.60 0.23 -31.00 15 8 H 0.05 3.10 7.74 -2.91 -0.02 3.08 15 9 C 0.03 1.45 4.52 29.85 0.13 1.58 15 10 C 0.09 3.60 3.18 31.54 0.10 3.70 15 11 H 0.07 2.94 8.14 -2.39 -0.02 2.93 15 12 C -0.12 -3.95 6.15 31.35 0.19 -3.76 15 13 C -0.18 -5.37 3.92 -9.51 -0.04 -5.41 15 14 H 0.09 2.81 8.14 -2.39 -0.02 2.79 15 15 C 0.07 1.54 7.28 71.84 0.52 2.07 15 16 O -0.39 -10.44 11.58 -148.98 -1.72 -12.17 15 17 C 0.09 2.35 7.61 70.47 0.54 2.88 15 18 C 0.02 0.56 3.94 30.71 0.12 0.69 15 19 H 0.03 1.05 6.92 -2.39 -0.02 1.04 15 20 O -0.36 -15.60 11.07 -110.58 -1.22 -16.83 15 21 H 0.26 15.10 8.31 -92.71 -0.77 14.33 15 22 H 0.02 1.18 8.14 -2.39 -0.02 1.16 15 23 H 0.00 -0.29 8.14 -2.38 -0.02 -0.31 15 24 H 0.10 2.56 8.04 -2.39 -0.02 2.54 15 25 H 0.08 2.59 7.75 -2.39 -0.02 2.57 15 26 H 0.11 2.07 8.14 -2.38 -0.02 2.05 15 27 H 0.08 1.65 8.02 -2.38 -0.02 1.63 15 28 H 0.11 2.37 8.14 -2.38 -0.02 2.35 15 29 H 0.08 2.06 8.14 -2.39 -0.02 2.05 15 Total: -1.00 -66.77 241.58 2.74 -64.03 By element: Atomic # 1 Polarization: 1.96 SS G_CDS: 1.12 Total: 3.08 kcal Atomic # 6 Polarization: -30.97 SS G_CDS: 2.26 Total: -28.71 kcal Atomic # 7 Polarization: -56.99 SS G_CDS: 0.28 Total: -56.70 kcal Atomic # 8 Polarization: -26.05 SS G_CDS: -2.95 Total: -28.99 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -66.77 2.74 -64.03 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724652366.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.578 kcal (2) G-P(sol) polarization free energy of solvation -66.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds