Wall clock time and date at job start Mon Mar 30 2020 01:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30675 * 1 3 3 Si 1.86803 * 119.99729 * 2 1 4 4 H 1.48494 * 109.46998 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47343 * 300.00177 * 3 2 1 6 6 H 1.48497 * 109.47221 * 59.99772 * 3 2 1 7 7 C 1.40047 * 120.00067 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99502 * 180.02562 * 7 2 1 9 9 C 1.46369 * 119.99904 * 0.02562 * 7 2 1 10 10 O 1.21690 * 120.00307 * 359.97438 * 9 7 2 11 11 N 1.34780 * 119.99983 * 180.02562 * 9 7 2 12 12 C 1.47583 * 134.48847 * 359.97438 * 11 9 7 13 13 C 1.53947 * 86.11463 * 155.36171 * 12 11 9 14 14 C 1.47573 * 134.49478 * 179.97438 * 11 9 7 15 15 H 1.09004 * 113.77283 * 318.93865 * 14 11 9 16 16 C 1.50701 * 113.77215 * 90.33965 * 14 11 9 17 17 N 1.34779 * 120.00379 * 176.49903 * 16 14 11 18 18 O 1.21287 * 119.99893 * 356.48962 * 16 14 11 19 19 H 0.97005 * 120.00110 * 0.02562 * 1 2 3 20 20 H 1.08996 * 113.77114 * 41.06515 * 12 11 9 21 21 H 1.09000 * 113.77347 * 269.66435 * 12 11 9 22 22 H 1.09004 * 113.74083 * 137.95224 * 13 12 11 23 23 H 1.08999 * 113.74208 * 269.26384 * 13 12 11 24 24 H 0.96996 * 119.99510 * 359.97438 * 17 16 14 25 25 H 0.97001 * 120.00009 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.7006 1.3465 0.0006 5 1 1.8819 2.3965 -1.2125 6 1 1.8819 2.3965 1.2124 7 6 2.0070 -1.2128 -0.0005 8 1 3.0870 -1.2127 -0.0001 9 6 1.2751 -2.4804 -0.0017 10 8 0.0582 -2.4805 -0.0017 11 7 1.9490 -3.6476 -0.0017 12 6 3.3779 -4.0169 -0.0012 13 6 2.9274 -5.3426 0.6386 14 6 1.5545 -5.0697 -0.0021 15 1 0.7120 -5.2922 0.6527 16 6 1.4006 -5.6569 -1.3815 17 7 1.1125 -6.9653 -1.5286 18 8 1.5357 -4.9521 -2.3592 19 1 -0.4850 0.8401 -0.0004 20 1 3.9912 -3.3988 0.6544 21 1 3.8023 -4.1322 -0.9986 22 1 3.4338 -6.2193 0.2347 23 1 2.9149 -5.3220 1.7284 24 1 1.0047 -7.5290 -0.7467 25 1 1.0130 -7.3432 -2.4165 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000757139228.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:29 Heat of formation + Delta-G solvation = -75.056167 kcal Electronic energy + Delta-G solvation = -12602.495945 eV Core-core repulsion = 10194.799770 eV Total energy + Delta-G solvation = -2407.696175 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 198.079 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.47696 -39.19293 -37.61132 -34.69016 -34.63457 -30.58412 -28.16373 -27.57192 -23.43103 -22.60402 -20.25161 -18.95565 -18.00545 -17.90627 -17.53874 -16.39115 -16.05813 -15.70705 -15.30197 -14.36305 -14.18871 -13.99534 -13.30211 -12.98571 -12.82291 -12.60724 -12.32623 -12.00897 -11.77110 -11.22248 -10.97628 -10.67464 -9.90964 -9.21422 -8.33744 -6.90307 1.36266 1.37688 1.53956 1.56591 2.14881 2.28848 2.55658 2.70475 3.49884 3.57937 4.07365 4.24644 4.38288 4.54808 4.73610 4.88618 5.08298 5.27159 5.30999 5.88570 5.93731 6.32194 6.52968 6.81480 7.37442 7.52268 8.39996 8.62850 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.058069 B = 0.010233 C = 0.009629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.073240 B = 2735.678051 C = 2907.166786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.024 3.976 3 Si 1.005 2.995 4 H -0.246 1.246 5 H -0.269 1.269 6 H -0.261 1.261 7 C -0.564 4.564 8 H 0.084 0.916 9 C 0.559 3.441 10 O -0.634 6.634 11 N -0.659 5.659 12 C 0.099 3.901 13 C -0.093 4.093 14 C 0.088 3.912 15 H 0.105 0.895 16 C 0.512 3.488 17 N -0.823 5.823 18 O -0.591 6.591 19 H 0.276 0.724 20 H 0.085 0.915 21 H 0.062 0.938 22 H 0.118 0.882 23 H 0.121 0.879 24 H 0.421 0.579 25 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.302 -12.134 2.624 14.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.190 4.190 3 Si 0.823 3.177 4 H -0.169 1.169 5 H -0.194 1.194 6 H -0.185 1.185 7 C -0.600 4.600 8 H 0.102 0.898 9 C 0.367 3.633 10 O -0.522 6.522 11 N -0.397 5.397 12 C -0.024 4.024 13 C -0.131 4.131 14 C -0.021 4.021 15 H 0.123 0.877 16 C 0.295 3.705 17 N -0.389 5.389 18 O -0.470 6.470 19 H 0.086 0.914 20 H 0.103 0.897 21 H 0.080 0.920 22 H 0.136 0.864 23 H 0.139 0.861 24 H 0.253 0.747 25 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 7.494 -11.268 2.145 13.702 hybrid contribution -0.367 0.385 -0.403 0.667 sum 7.127 -10.883 1.743 13.125 Atomic orbital electron populations 1.70209 1.09695 1.29060 1.36480 1.27102 0.95639 1.05188 0.91068 0.84886 0.79244 0.74810 0.78775 1.16897 1.19412 1.18546 1.21348 0.94531 0.89647 1.54504 0.89806 1.18479 0.86233 0.83195 0.75416 1.90529 1.16280 1.87212 1.58137 1.50102 1.08603 1.03089 1.77861 1.23128 0.84102 0.95305 0.99904 1.23396 0.90054 0.97447 1.02200 1.22593 1.02558 0.83970 0.92936 0.87735 1.21178 0.74822 0.83144 0.91350 1.43489 1.73223 1.08534 1.13671 1.90735 1.52015 1.61693 1.42569 0.91415 0.89692 0.91994 0.86379 0.86105 0.74659 0.76019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -53.37 11.83 21.84 0.26 -53.12 15 2 C 0.02 1.45 5.50 85.30 0.47 1.92 15 3 Si 1.00 43.13 29.56 68.60 2.03 45.16 15 4 H -0.25 -9.75 7.11 99.48 0.71 -9.04 15 5 H -0.27 -11.18 7.11 99.48 0.71 -10.48 15 6 H -0.26 -10.50 7.11 99.48 0.71 -9.79 15 7 C -0.56 -34.58 9.33 24.83 0.23 -34.35 15 8 H 0.08 4.67 7.67 -2.91 -0.02 4.65 15 9 C 0.56 35.62 7.98 86.36 0.69 36.31 15 10 O -0.63 -46.23 15.75 -4.32 -0.07 -46.30 15 11 N -0.66 -32.49 3.08 -823.21 -2.53 -35.02 15 12 C 0.10 3.53 8.14 86.48 0.70 4.23 15 13 C -0.09 -2.29 7.87 31.25 0.25 -2.04 15 14 C 0.09 3.22 4.80 44.35 0.21 3.43 15 15 H 0.10 3.67 8.14 -2.39 -0.02 3.65 15 16 C 0.51 18.53 7.40 87.66 0.65 19.18 15 17 N -0.82 -17.57 8.87 -173.52 -1.54 -19.11 15 18 O -0.59 -29.15 17.46 -3.05 -0.05 -29.20 15 19 H 0.28 15.99 8.29 -92.70 -0.77 15.22 15 20 H 0.08 2.82 8.14 -2.39 -0.02 2.80 15 21 H 0.06 2.26 8.14 -2.39 -0.02 2.24 15 22 H 0.12 1.90 8.09 -2.38 -0.02 1.88 15 23 H 0.12 2.45 8.14 -2.39 -0.02 2.43 15 24 H 0.42 5.28 8.83 -92.71 -0.82 4.46 15 25 H 0.41 7.59 8.93 -92.71 -0.83 6.76 15 Total: -1.00 -95.00 233.28 0.88 -94.12 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -0.41 Total: 14.79 kcal Atomic # 6 Polarization: 25.48 SS G_CDS: 3.20 Total: 28.68 kcal Atomic # 7 Polarization: -103.43 SS G_CDS: -3.81 Total: -107.24 kcal Atomic # 8 Polarization: -75.38 SS G_CDS: -0.12 Total: -75.50 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -95.00 0.88 -94.12 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757139228.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.060 kcal (2) G-P(sol) polarization free energy of solvation -94.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds