Wall clock time and date at job start Mon Mar 30 2020 01:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 110.48638 * 2 1 4 4 C 1.53978 * 110.55079 * 237.58300 * 2 1 3 5 5 C 1.51197 * 104.31224 * 241.57902 * 4 2 1 6 6 O 1.21277 * 125.58767 * 179.75691 * 5 4 2 7 7 N 1.34053 * 108.81802 * 359.75287 * 5 4 2 8 8 N 1.39333 * 113.08010 * 0.02562 * 7 5 4 9 9 C 1.34775 * 125.34027 * 179.97438 * 8 7 5 10 10 O 1.21683 * 120.00208 * 180.02562 * 9 8 7 11 11 C 1.46373 * 119.99634 * 0.02682 * 9 8 7 12 12 H 1.08002 * 120.00452 * 0.02562 * 11 9 8 13 13 C 1.40050 * 119.99716 * 179.71971 * 11 9 8 14 14 N 1.30674 * 120.00151 * 0.28083 * 13 11 9 15 15 Si 1.86803 * 119.99913 * 180.27503 * 13 11 9 16 16 H 1.48508 * 109.46742 * 90.00451 * 15 13 11 17 17 H 1.48501 * 109.47216 * 210.00308 * 15 13 11 18 18 H 1.48499 * 109.47135 * 330.00649 * 15 13 11 19 19 H 1.08997 * 109.47387 * 298.98149 * 1 2 3 20 20 H 1.08998 * 109.46821 * 58.97933 * 1 2 3 21 21 H 1.08995 * 109.47248 * 178.97484 * 1 2 3 22 22 H 1.08998 * 110.67495 * 122.76553 * 4 2 1 23 23 H 1.09001 * 110.36639 * 0.23531 * 4 2 1 24 24 H 0.97000 * 123.45598 * 179.97438 * 7 5 4 25 25 H 0.97005 * 120.00029 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9115 1.0211 0.0000 4 6 2.0705 -0.7729 -1.2171 5 6 2.8546 -1.9170 -0.6152 6 8 3.4440 -2.7739 -1.2390 7 7 2.7916 -1.8287 0.7209 8 7 2.0426 -0.7396 1.1616 9 6 1.8187 -0.4180 2.4512 10 8 1.1470 0.5584 2.7270 11 6 2.3838 -1.2433 3.5199 12 1 2.9804 -2.1097 3.2751 13 6 2.1561 -0.9058 4.8599 14 7 1.4346 0.1427 5.1561 15 14 2.8835 -1.9546 6.2238 16 1 4.2293 -1.4380 6.5811 17 1 1.9996 -1.8993 7.4158 18 1 3.0002 -3.3600 5.7588 19 1 -0.3634 0.4979 0.8989 20 1 -0.3633 0.5296 -0.8807 21 1 -0.3633 -1.0274 -0.0184 22 1 2.7224 -0.1383 -1.8175 23 1 1.2468 -1.1521 -1.8220 24 1 3.2225 -2.4588 1.3194 25 1 1.2766 0.3763 6.0843 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001463969250.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:19 Heat of formation + Delta-G solvation = -63.481926 kcal Electronic energy + Delta-G solvation = -12710.498649 eV Core-core repulsion = 10303.304371 eV Total energy + Delta-G solvation = -2407.194279 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 198.079 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.68088 -39.19353 -37.40215 -34.83516 -33.97779 -31.43272 -28.61090 -28.23939 -23.70355 -22.12371 -21.57117 -19.62089 -18.12025 -17.27891 -17.03668 -16.12917 -15.99708 -15.33315 -14.99972 -14.70068 -14.58295 -13.67009 -13.31875 -13.03093 -12.83519 -12.77313 -12.53165 -12.31418 -12.07459 -11.62362 -11.06653 -10.99845 -10.05435 -8.81366 -8.41994 -6.97913 1.31022 1.36690 1.41474 1.49341 1.55636 2.21272 2.33911 3.24027 3.43072 3.50365 3.64455 4.08594 4.39266 4.67743 4.73437 4.90266 5.09844 5.17859 5.35780 5.40755 5.72612 6.07674 6.28539 6.74743 6.89819 7.58306 8.20289 8.51206 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.045585 B = 0.011796 C = 0.009635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.090407 B = 2373.134737 C = 2905.355968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.132 3.868 3 H 0.082 0.918 4 C -0.143 4.143 5 C 0.515 3.485 6 O -0.574 6.574 7 N -0.505 5.505 8 N -0.453 5.453 9 C 0.561 3.439 10 O -0.594 6.594 11 C -0.567 4.567 12 H 0.086 0.914 13 C 0.036 3.964 14 N -0.811 5.811 15 Si 0.996 3.004 16 H -0.261 1.261 17 H -0.270 1.270 18 H -0.251 1.251 19 H 0.039 0.961 20 H 0.103 0.897 21 H 0.052 0.948 22 H 0.138 0.862 23 H 0.138 0.862 24 H 0.423 0.577 25 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.735 -2.102 -6.643 7.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.030 3.970 3 H 0.100 0.900 4 C -0.183 4.183 5 C 0.302 3.698 6 O -0.454 6.454 7 N -0.252 5.252 8 N -0.287 5.287 9 C 0.369 3.631 10 O -0.475 6.475 11 C -0.604 4.604 12 H 0.104 0.896 13 C -0.181 4.181 14 N -0.440 5.440 15 Si 0.815 3.185 16 H -0.186 1.186 17 H -0.195 1.195 18 H -0.175 1.175 19 H 0.058 0.942 20 H 0.122 0.878 21 H 0.071 0.929 22 H 0.156 0.844 23 H 0.156 0.844 24 H 0.267 0.733 25 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.489 -1.740 -6.656 6.897 hybrid contribution 0.388 -0.507 1.145 1.311 sum 0.876 -2.247 -5.510 6.015 Atomic orbital electron populations 1.22078 0.93557 1.02140 1.03061 1.21756 0.95707 0.95999 0.83567 0.89978 1.22624 1.02343 0.95666 0.97674 1.20689 0.80935 0.87022 0.81194 1.90742 1.48626 1.41455 1.64600 1.45155 1.49238 1.23413 1.07368 1.48574 1.52550 1.21527 1.06023 1.18353 0.80776 0.85195 0.78762 1.90628 1.45495 1.31906 1.79478 1.21338 1.35250 1.13158 0.90611 0.89618 1.26876 0.93275 0.95757 1.02231 1.70109 1.29597 1.23542 1.20756 0.85024 0.78532 0.78889 0.76017 1.18580 1.19492 1.17465 0.94189 0.87797 0.92897 0.84387 0.84431 0.73326 0.91004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.80 9.09 71.98 0.65 -4.15 15 2 C 0.13 4.51 3.74 45.24 0.17 4.68 15 3 H 0.08 2.78 8.14 -2.38 -0.02 2.76 15 4 C -0.14 -3.75 6.62 30.34 0.20 -3.55 15 5 C 0.52 17.87 8.63 87.93 0.76 18.63 15 6 O -0.57 -22.64 18.03 -3.02 -0.05 -22.69 15 7 N -0.50 -19.41 6.52 -173.94 -1.13 -20.55 15 8 N -0.45 -19.82 3.66 -444.37 -1.63 -21.45 15 9 C 0.56 30.67 7.62 86.36 0.66 31.33 15 10 O -0.59 -36.63 14.03 -4.29 -0.06 -36.69 15 11 C -0.57 -30.40 9.21 24.83 0.23 -30.17 15 12 H 0.09 4.13 6.60 -2.91 -0.02 4.11 15 13 C 0.04 1.87 5.50 85.30 0.47 2.34 15 14 N -0.81 -46.68 11.83 21.84 0.26 -46.43 15 15 Si 1.00 38.90 29.56 68.60 2.03 40.93 15 16 H -0.26 -9.78 7.11 99.48 0.71 -9.08 15 17 H -0.27 -10.18 7.11 99.48 0.71 -9.47 15 18 H -0.25 -9.23 7.11 99.48 0.71 -8.53 15 19 H 0.04 1.61 6.88 -2.39 -0.02 1.60 15 20 H 0.10 2.37 8.14 -2.39 -0.02 2.35 15 21 H 0.05 1.67 8.14 -2.39 -0.02 1.65 15 22 H 0.14 2.80 8.14 -2.39 -0.02 2.78 15 23 H 0.14 2.84 7.72 -2.39 -0.02 2.82 15 24 H 0.42 15.85 7.56 -213.81 -1.62 14.23 15 25 H 0.28 14.54 8.29 -92.70 -0.77 13.77 15 Total: -1.00 -70.95 224.98 2.15 -68.80 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: -0.40 Total: 18.99 kcal Atomic # 6 Polarization: 15.96 SS G_CDS: 3.14 Total: 19.10 kcal Atomic # 7 Polarization: -85.92 SS G_CDS: -2.50 Total: -88.43 kcal Atomic # 8 Polarization: -59.27 SS G_CDS: -0.11 Total: -59.39 kcal Atomic # 14 Polarization: 38.90 SS G_CDS: 2.03 Total: 40.93 kcal Total: -70.95 2.15 -68.80 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001463969250.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.316 kcal (2) G-P(sol) polarization free energy of solvation -70.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds