Wall clock time and date at job start Mon Mar 30 2020 01:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08998 * 110.49021 * 2 1 4 4 C 1.53984 * 110.32545 * 122.55033 * 2 1 3 5 5 C 1.51186 * 104.31426 * 119.06438 * 4 2 1 6 6 O 1.21283 * 125.59315 * 179.75017 * 5 4 2 7 7 N 1.34053 * 108.82358 * 359.75736 * 5 4 2 8 8 N 1.39342 * 113.07409 * 359.97438 * 7 5 4 9 9 C 1.34777 * 125.33826 * 179.97438 * 8 7 5 10 10 O 1.21683 * 120.00011 * 180.02562 * 9 8 7 11 11 C 1.46373 * 120.00143 * 0.02658 * 9 8 7 12 12 H 1.08001 * 119.99611 * 0.02562 * 11 9 8 13 13 C 1.40045 * 120.00438 * 179.97438 * 11 9 8 14 14 N 1.30674 * 119.99799 * 0.02562 * 13 11 9 15 15 Si 1.86798 * 120.00532 * 179.97438 * 13 11 9 16 16 H 1.48490 * 109.47339 * 180.02562 * 15 13 11 17 17 H 1.48493 * 109.47239 * 300.00695 * 15 13 11 18 18 H 1.48504 * 109.46636 * 60.00254 * 15 13 11 19 19 H 1.09001 * 109.47490 * 181.02176 * 1 2 3 20 20 H 1.09003 * 109.47342 * 301.02300 * 1 2 3 21 21 H 1.09004 * 109.47418 * 61.02418 * 1 2 3 22 22 H 1.09001 * 110.67446 * 0.25422 * 4 2 1 23 23 H 1.09005 * 110.36395 * 237.72608 * 4 2 1 24 24 H 0.97005 * 123.47022 * 180.02562 * 7 5 4 25 25 H 0.96996 * 120.00331 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9115 1.0210 0.0000 4 6 2.0648 -0.7769 1.2171 5 6 2.8620 -1.9118 0.6153 6 8 3.4586 -2.7639 1.2390 7 7 2.8015 -1.8219 -0.7208 8 7 2.0425 -0.7396 -1.1616 9 6 1.8195 -0.4175 -2.4512 10 8 1.1392 0.5529 -2.7270 11 6 2.3956 -1.2351 -3.5199 12 1 2.9990 -2.0967 -3.2751 13 6 2.1635 -0.9008 -4.8599 14 7 1.4329 0.1414 -5.1561 15 14 2.8992 -1.9437 -6.2239 16 1 2.5083 -1.3824 -7.5419 17 1 4.3794 -1.9417 -6.1048 18 1 2.3952 -3.3358 -6.1090 19 1 -0.3634 -1.0275 0.0183 20 1 -0.3634 0.5296 0.8807 21 1 -0.3634 0.4978 -0.8990 22 1 1.2422 -1.1655 1.8175 23 1 2.7083 -0.1380 1.8221 24 1 3.2403 -2.4465 -1.3195 25 1 1.2724 0.3733 -6.0842 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001463969258.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:21 Heat of formation + Delta-G solvation = -39.008728 kcal Electronic energy + Delta-G solvation = -12709.073291 eV Core-core repulsion = 10302.940249 eV Total energy + Delta-G solvation = -2406.133041 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 198.079 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.10638 -37.39781 -35.59906 -32.92967 -32.41633 -29.71204 -27.09034 -26.40724 -22.01999 -20.60404 -19.93272 -17.80750 -16.26288 -15.75061 -15.32442 -14.50846 -14.29720 -13.80658 -13.24818 -13.08416 -12.79996 -12.31705 -11.77172 -11.38906 -11.24541 -11.06261 -10.85704 -10.71293 -10.44949 -10.03362 -9.53506 -9.04912 -8.01230 -7.06658 -6.46160 -4.93117 2.94253 2.94882 3.04742 3.10035 3.13276 3.95843 4.28511 4.63992 4.94960 5.03171 5.22938 5.55236 5.75533 5.90703 5.99118 6.17857 6.47344 6.77874 6.90935 7.20062 7.60318 7.86589 8.01499 8.50424 8.75660 9.36268 10.19289 10.44017 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.045569 B = 0.011798 C = 0.009632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.298735 B = 2372.741960 C = 2906.414112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.143 3.857 3 H 0.081 0.919 4 C -0.162 4.162 5 C 0.514 3.486 6 O -0.554 6.554 7 N -0.500 5.500 8 N -0.448 5.448 9 C 0.574 3.426 10 O -0.551 6.551 11 C -0.540 4.540 12 H 0.069 0.931 13 C 0.088 3.912 14 N -0.762 5.762 15 Si 0.914 3.086 16 H -0.278 1.278 17 H -0.266 1.266 18 H -0.266 1.266 19 H 0.053 0.947 20 H 0.059 0.941 21 H 0.080 0.920 22 H 0.107 0.893 23 H 0.104 0.896 24 H 0.424 0.576 25 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.201 -1.227 5.695 5.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.039 3.961 3 H 0.099 0.901 4 C -0.203 4.203 5 C 0.298 3.702 6 O -0.433 6.433 7 N -0.247 5.247 8 N -0.284 5.284 9 C 0.382 3.618 10 O -0.428 6.428 11 C -0.576 4.576 12 H 0.087 0.913 13 C -0.133 4.133 14 N -0.389 5.389 15 Si 0.738 3.262 16 H -0.203 1.203 17 H -0.190 1.190 18 H -0.190 1.190 19 H 0.072 0.928 20 H 0.078 0.922 21 H 0.099 0.901 22 H 0.125 0.875 23 H 0.123 0.877 24 H 0.268 0.732 25 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.060 -0.851 5.641 5.705 hybrid contribution 0.561 -0.784 -0.956 1.358 sum 0.501 -1.635 4.685 4.987 Atomic orbital electron populations 1.22151 0.94403 1.02095 1.03002 1.21417 0.94979 0.95784 0.83892 0.90101 1.22571 1.01461 0.97405 0.98844 1.20186 0.81618 0.86549 0.81845 1.90744 1.47573 1.40447 1.64498 1.45086 1.48450 1.24506 1.06616 1.48989 1.52203 1.21414 1.05796 1.18207 0.81120 0.85389 0.77096 1.90668 1.43627 1.30682 1.77809 1.20780 1.34127 1.13019 0.89695 0.91292 1.25710 0.93453 0.94632 0.99514 1.69959 1.27718 1.21435 1.19826 0.86306 0.80082 0.80420 0.79377 1.20257 1.19031 1.19033 0.92826 0.92239 0.90126 0.87526 0.87749 0.73172 0.91477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.65 9.08 37.15 0.34 -2.31 15 2 C 0.14 2.56 3.76 -67.18 -0.25 2.31 15 3 H 0.08 1.43 8.14 -51.93 -0.42 1.00 15 4 C -0.16 -2.43 6.60 -27.13 -0.18 -2.60 15 5 C 0.51 9.50 8.63 -11.07 -0.10 9.40 15 6 O -0.55 -11.52 18.03 5.56 0.10 -11.42 15 7 N -0.50 -9.85 6.52 31.22 0.20 -9.65 15 8 N -0.45 -9.85 3.66 -54.44 -0.20 -10.05 15 9 C 0.57 15.34 7.63 -12.99 -0.10 15.24 15 10 O -0.55 -16.38 14.01 5.20 0.07 -16.31 15 11 C -0.54 -14.30 9.21 -35.63 -0.33 -14.63 15 12 H 0.07 1.66 6.60 -52.49 -0.35 1.31 15 13 C 0.09 2.31 5.50 -17.37 -0.10 2.22 15 14 N -0.76 -21.38 11.83 55.55 0.66 -20.72 15 15 Si 0.91 19.07 29.56 -169.99 -5.02 14.04 15 16 H -0.28 -5.66 7.11 56.52 0.40 -5.25 15 17 H -0.27 -5.42 7.11 56.52 0.40 -5.02 15 18 H -0.27 -5.42 7.11 56.52 0.40 -5.02 15 19 H 0.05 0.89 8.14 -51.93 -0.42 0.47 15 20 H 0.06 0.78 8.14 -51.93 -0.42 0.35 15 21 H 0.08 1.62 6.86 -51.93 -0.36 1.26 15 22 H 0.11 1.37 7.73 -51.93 -0.40 0.97 15 23 H 0.10 1.31 8.14 -51.93 -0.42 0.89 15 24 H 0.42 8.03 7.56 -183.16 -1.38 6.65 15 25 H 0.27 6.99 8.29 -40.82 -0.34 6.65 15 LS Contribution 224.94 15.07 3.39 3.39 Total: -1.00 -32.02 224.94 -4.83 -36.85 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -3.31 Total: 4.25 kcal Atomic # 6 Polarization: 10.34 SS G_CDS: -0.71 Total: 9.63 kcal Atomic # 7 Polarization: -41.08 SS G_CDS: 0.66 Total: -40.42 kcal Atomic # 8 Polarization: -27.91 SS G_CDS: 0.17 Total: -27.73 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.02 Total: 14.04 kcal Total LS contribution 3.39 Total: 3.39 kcal Total: -32.02 -4.83 -36.85 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001463969258.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.162 kcal (2) G-P(sol) polarization free energy of solvation -32.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds