Wall clock time and date at job start Mon Mar 30 2020 01:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86800 * 119.99671 * 2 1 4 4 H 1.48500 * 109.47517 * 269.99836 * 3 2 1 5 5 H 1.48496 * 109.47375 * 30.00367 * 3 2 1 6 6 H 1.48502 * 109.46736 * 150.00063 * 3 2 1 7 7 C 1.38945 * 120.00134 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00271 * 359.97438 * 7 2 1 9 9 N 1.37102 * 119.99860 * 179.97438 * 7 2 1 10 10 C 1.34777 * 119.99634 * 179.97438 * 9 7 2 11 11 O 1.21293 * 120.00456 * 0.02562 * 10 9 7 12 12 C 1.50700 * 119.99675 * 179.72687 * 10 9 7 13 13 C 1.53004 * 109.47208 * 180.27843 * 12 10 9 14 14 H 1.09001 * 112.91813 * 316.48366 * 13 12 10 15 15 C 1.53723 * 113.70770 * 184.99784 * 13 12 10 16 16 C 1.51507 * 86.60975 * 245.59883 * 15 13 12 17 17 O 1.21287 * 134.18074 * 180.02562 * 16 15 13 18 18 N 1.35838 * 91.64899 * 0.02562 * 16 15 13 19 19 H 0.97004 * 120.00488 * 0.02562 * 1 2 3 20 20 H 0.97001 * 119.99881 * 0.02562 * 9 7 2 21 21 H 1.09009 * 109.47352 * 300.27556 * 12 10 9 22 22 H 1.08998 * 109.47585 * 60.27844 * 12 10 9 23 23 H 1.09003 * 113.69209 * 0.02953 * 15 13 12 24 24 H 1.09005 * 113.69141 * 131.07690 * 15 13 12 25 25 H 0.97000 * 132.38142 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0466 -1.4000 5 1 1.4455 2.6527 0.7001 6 1 3.5455 1.4402 0.7000 7 6 2.0088 -1.2033 -0.0005 8 1 1.4689 -2.1386 -0.0005 9 7 3.3798 -1.2032 -0.0011 10 6 4.0537 -2.3704 -0.0011 11 8 3.4473 -3.4209 -0.0011 12 6 5.5607 -2.3704 -0.0079 13 6 6.0708 -3.8129 -0.0134 14 1 5.5290 -4.4573 0.6789 15 6 7.5993 -3.9284 0.1020 16 6 7.5718 -4.5013 -1.3003 17 8 8.4219 -4.9063 -2.0647 18 7 6.2201 -4.3829 -1.3644 19 1 -0.4851 0.8400 -0.0004 20 1 3.8648 -0.3631 -0.0007 21 1 5.9201 -1.8545 -0.8984 22 1 5.9281 -1.8586 0.8816 23 1 8.1072 -2.9665 0.1723 24 1 7.9288 -4.6386 0.8605 25 1 5.5770 -4.5991 -2.0576 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001464724404.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:02 Heat of formation + Delta-G solvation = -49.525676 kcal Electronic energy + Delta-G solvation = -12125.387331 eV Core-core repulsion = 9718.798241 eV Total energy + Delta-G solvation = -2406.589090 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 198.079 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.51241 -38.34385 -36.45504 -34.08793 -31.80576 -30.30418 -28.11928 -24.96125 -22.31105 -19.57519 -19.40597 -18.44234 -17.17497 -16.36434 -15.89968 -15.55368 -14.83738 -14.28583 -13.57128 -12.99409 -12.85773 -12.54426 -12.38659 -11.92284 -11.48711 -11.39719 -11.18686 -10.65943 -10.05952 -9.94501 -9.67432 -9.10462 -8.65904 -8.28276 -6.39611 -3.91845 2.56489 2.96345 3.01375 3.10180 3.40759 3.64037 4.02734 4.08937 4.31024 4.82666 4.96695 5.13612 5.33253 5.48593 5.63466 5.73564 5.93558 6.16858 6.50428 7.02732 7.47045 8.04696 8.44200 8.48105 8.84907 9.32814 9.70082 10.73148 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.069916 B = 0.007694 C = 0.007306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 400.384805 B = 3638.307121 C = 3831.720037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.043 3.957 3 Si 0.880 3.120 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.268 1.268 7 C -0.310 4.310 8 H 0.120 0.880 9 N -0.585 5.585 10 C 0.446 3.554 11 O -0.579 6.579 12 C -0.144 4.144 13 C 0.158 3.842 14 H 0.112 0.888 15 C -0.181 4.181 16 C 0.526 3.474 17 O -0.523 6.523 18 N -0.733 5.733 19 H 0.275 0.725 20 H 0.372 0.628 21 H 0.087 0.913 22 H 0.099 0.901 23 H 0.112 0.888 24 H 0.113 0.887 25 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.375 -0.627 1.946 12.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.161 4.161 3 Si 0.707 3.293 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.194 1.194 7 C -0.438 4.438 8 H 0.137 0.863 9 N -0.223 5.223 10 C 0.233 3.767 11 O -0.463 6.463 12 C -0.185 4.185 13 C 0.053 3.947 14 H 0.130 0.870 15 C -0.221 4.221 16 C 0.311 3.689 17 O -0.398 6.398 18 N -0.392 5.392 19 H 0.085 0.915 20 H 0.205 0.795 21 H 0.106 0.894 22 H 0.117 0.883 23 H 0.130 0.870 24 H 0.131 0.869 25 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 12.191 -1.425 1.523 12.368 hybrid contribution 0.042 1.413 -0.329 1.451 sum 12.234 -0.012 1.195 12.292 Atomic orbital electron populations 1.69618 1.05710 1.27677 1.48736 1.25066 0.95513 0.98102 0.97395 0.86662 0.79793 0.83916 0.78969 1.19573 1.20088 1.19391 1.19450 0.79279 0.96668 1.48431 0.86251 1.42248 1.07619 1.06291 1.66166 1.19698 0.88275 0.84530 0.84243 1.90570 1.69812 1.30933 1.55018 1.21837 0.95823 0.96652 1.04189 1.22135 0.94252 0.94555 0.83766 0.87010 1.24061 0.96891 1.04016 0.97138 1.22091 0.82153 0.76459 0.88203 1.90736 1.46703 1.49172 1.53187 1.48847 1.07947 1.64093 1.18299 0.91485 0.79531 0.89418 0.88292 0.86968 0.86880 0.75522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.05 13.96 55.50 0.77 -24.27 15 2 C 0.04 1.14 5.50 -17.47 -0.10 1.04 15 3 Si 0.88 18.70 27.74 -169.99 -4.71 13.98 15 4 H -0.27 -5.67 7.11 56.52 0.40 -5.26 15 5 H -0.28 -5.90 7.11 56.52 0.40 -5.50 15 6 H -0.27 -5.12 6.52 56.52 0.37 -4.76 15 7 C -0.31 -8.45 10.16 -14.93 -0.15 -8.60 15 8 H 0.12 3.74 7.39 -52.49 -0.39 3.35 15 9 N -0.59 -13.16 5.09 -10.96 -0.06 -13.22 15 10 C 0.45 9.23 7.78 -10.98 -0.09 9.15 15 11 O -0.58 -14.27 15.33 5.55 0.09 -14.19 15 12 C -0.14 -1.99 5.67 -27.88 -0.16 -2.15 15 13 C 0.16 2.03 4.07 -67.23 -0.27 1.75 15 14 H 0.11 1.53 7.67 -51.93 -0.40 1.13 15 15 C -0.18 -1.81 7.92 -27.15 -0.21 -2.02 15 16 C 0.53 7.43 9.85 -10.27 -0.10 7.33 15 17 O -0.52 -9.28 18.03 5.55 0.10 -9.18 15 18 N -0.73 -10.22 7.24 -58.03 -0.42 -10.64 15 19 H 0.27 7.22 8.31 -40.82 -0.34 6.88 15 20 H 0.37 7.30 5.76 -40.82 -0.24 7.06 15 21 H 0.09 1.12 8.14 -51.92 -0.42 0.69 15 22 H 0.10 1.08 8.14 -51.93 -0.42 0.66 15 23 H 0.11 0.89 8.01 -51.93 -0.42 0.48 15 24 H 0.11 0.89 8.14 -51.93 -0.42 0.47 15 25 H 0.40 5.73 8.96 -40.82 -0.37 5.36 15 LS Contribution 229.57 15.07 3.46 3.46 Total: -1.00 -32.89 229.57 -4.09 -36.98 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -2.24 Total: 10.57 kcal Atomic # 6 Polarization: 7.58 SS G_CDS: -1.08 Total: 6.50 kcal Atomic # 7 Polarization: -48.43 SS G_CDS: 0.30 Total: -48.13 kcal Atomic # 8 Polarization: -23.56 SS G_CDS: 0.19 Total: -23.37 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -4.71 Total: 13.98 kcal Total LS contribution 3.46 Total: 3.46 kcal Total: -32.89 -4.09 -36.98 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464724404.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.541 kcal (2) G-P(sol) polarization free energy of solvation -32.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds