Wall clock time and date at job start Mon Mar 30 2020 01:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86800 * 119.99671 * 2 1 4 4 H 1.48500 * 109.47517 * 269.99836 * 3 2 1 5 5 H 1.48496 * 109.47375 * 30.00367 * 3 2 1 6 6 H 1.48502 * 109.46736 * 150.00063 * 3 2 1 7 7 C 1.38945 * 120.00134 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00271 * 359.97438 * 7 2 1 9 9 N 1.37102 * 119.99860 * 179.97438 * 7 2 1 10 10 C 1.34777 * 119.99634 * 179.97438 * 9 7 2 11 11 O 1.21293 * 120.00456 * 0.02562 * 10 9 7 12 12 C 1.50700 * 119.99675 * 179.72687 * 10 9 7 13 13 C 1.53004 * 109.47208 * 180.27843 * 12 10 9 14 14 H 1.09001 * 112.91813 * 316.48366 * 13 12 10 15 15 C 1.53723 * 113.70770 * 184.99784 * 13 12 10 16 16 C 1.51507 * 86.60975 * 245.59883 * 15 13 12 17 17 O 1.21287 * 134.18074 * 180.02562 * 16 15 13 18 18 N 1.35838 * 91.64899 * 0.02562 * 16 15 13 19 19 H 0.97004 * 120.00488 * 0.02562 * 1 2 3 20 20 H 0.97001 * 119.99881 * 0.02562 * 9 7 2 21 21 H 1.09009 * 109.47352 * 300.27556 * 12 10 9 22 22 H 1.08998 * 109.47585 * 60.27844 * 12 10 9 23 23 H 1.09003 * 113.69209 * 0.02953 * 15 13 12 24 24 H 1.09005 * 113.69141 * 131.07690 * 15 13 12 25 25 H 0.97000 * 132.38142 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0466 -1.4000 5 1 1.4455 2.6527 0.7001 6 1 3.5455 1.4402 0.7000 7 6 2.0088 -1.2033 -0.0005 8 1 1.4689 -2.1386 -0.0005 9 7 3.3798 -1.2032 -0.0011 10 6 4.0537 -2.3704 -0.0011 11 8 3.4473 -3.4209 -0.0011 12 6 5.5607 -2.3704 -0.0079 13 6 6.0708 -3.8129 -0.0134 14 1 5.5290 -4.4573 0.6789 15 6 7.5993 -3.9284 0.1020 16 6 7.5718 -4.5013 -1.3003 17 8 8.4219 -4.9063 -2.0647 18 7 6.2201 -4.3829 -1.3644 19 1 -0.4851 0.8400 -0.0004 20 1 3.8648 -0.3631 -0.0007 21 1 5.9201 -1.8545 -0.8984 22 1 5.9281 -1.8586 0.8816 23 1 8.1072 -2.9665 0.1723 24 1 7.9288 -4.6386 0.8605 25 1 5.5770 -4.5991 -2.0576 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001464724404.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:01 Heat of formation + Delta-G solvation = -78.203874 kcal Electronic energy + Delta-G solvation = -12126.630911 eV Core-core repulsion = 9718.798241 eV Total energy + Delta-G solvation = -2407.832670 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 198.079 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.61367 -40.02023 -37.67078 -35.99225 -33.76707 -31.57572 -29.12548 -26.78141 -23.57252 -21.25595 -20.48459 -20.19577 -18.35166 -17.57252 -17.36318 -17.02633 -16.38758 -15.75818 -15.25292 -14.62485 -14.30859 -14.08676 -13.66874 -13.09726 -12.83132 -12.49997 -12.43470 -12.36380 -11.96261 -11.50772 -11.06278 -10.46306 -10.24865 -10.18977 -8.41114 -6.02358 1.31680 1.37248 1.46221 1.50322 1.97153 2.24063 2.39682 2.90421 3.14940 3.17176 3.76586 3.87106 4.21510 4.55017 4.69840 4.75380 4.88432 5.19741 5.48459 5.54910 5.91320 5.96364 6.57805 6.88313 7.34167 7.40495 7.96479 8.76418 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.069916 B = 0.007694 C = 0.007306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 400.384805 B = 3638.307121 C = 3831.720037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.016 4.016 3 Si 0.964 3.036 4 H -0.261 1.261 5 H -0.278 1.278 6 H -0.224 1.224 7 C -0.330 4.330 8 H 0.055 0.945 9 N -0.591 5.591 10 C 0.448 3.552 11 O -0.625 6.625 12 C -0.129 4.129 13 C 0.150 3.850 14 H 0.100 0.900 15 C -0.145 4.145 16 C 0.516 3.484 17 O -0.567 6.567 18 N -0.743 5.743 19 H 0.279 0.721 20 H 0.391 0.609 21 H 0.111 0.889 22 H 0.146 0.854 23 H 0.148 0.852 24 H 0.142 0.858 25 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.610 1.367 2.900 15.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.215 4.215 3 Si 0.784 3.216 4 H -0.186 1.186 5 H -0.203 1.203 6 H -0.147 1.147 7 C -0.459 4.459 8 H 0.073 0.927 9 N -0.231 5.231 10 C 0.236 3.764 11 O -0.511 6.511 12 C -0.170 4.170 13 C 0.045 3.955 14 H 0.118 0.882 15 C -0.184 4.184 16 C 0.303 3.697 17 O -0.445 6.445 18 N -0.400 5.400 19 H 0.088 0.912 20 H 0.227 0.773 21 H 0.129 0.871 22 H 0.164 0.836 23 H 0.166 0.834 24 H 0.160 0.840 25 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 15.449 0.560 2.501 15.660 hybrid contribution -1.035 0.614 -0.643 1.364 sum 14.414 1.174 1.858 14.581 Atomic orbital electron populations 1.69807 1.08268 1.29256 1.50303 1.26146 0.96447 1.02852 0.96047 0.85370 0.79769 0.76637 0.79790 1.18567 1.20293 1.14714 1.19024 0.81767 0.94833 1.50317 0.92682 1.42100 1.05727 1.07914 1.67398 1.21100 0.91332 0.83116 0.80818 1.90560 1.71881 1.32728 1.55969 1.21888 0.89493 0.98090 1.07490 1.22226 0.96622 0.93743 0.82883 0.88170 1.24023 0.94090 1.06022 0.94296 1.22871 0.81494 0.75704 0.89602 1.90711 1.47769 1.51053 1.54989 1.49178 1.08205 1.63985 1.18642 0.91201 0.77313 0.87096 0.83600 0.83442 0.84047 0.76527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.43 13.96 21.66 0.30 -55.13 15 2 C -0.02 -0.88 5.50 84.93 0.47 -0.41 15 3 Si 0.96 37.19 27.74 68.60 1.90 39.09 15 4 H -0.26 -9.67 7.11 99.48 0.71 -8.97 15 5 H -0.28 -10.77 7.11 99.48 0.71 -10.06 15 6 H -0.22 -6.98 6.52 99.48 0.65 -6.33 15 7 C -0.33 -18.60 10.16 84.04 0.85 -17.75 15 8 H 0.06 3.73 7.39 -2.91 -0.02 3.70 15 9 N -0.59 -25.82 5.09 -306.98 -1.56 -27.39 15 10 C 0.45 17.94 7.78 87.66 0.68 18.62 15 11 O -0.63 -31.48 15.33 -3.07 -0.05 -31.53 15 12 C -0.13 -3.02 5.67 29.85 0.17 -2.85 15 13 C 0.15 3.36 4.07 44.96 0.18 3.55 15 14 H 0.10 2.54 7.67 -2.39 -0.02 2.52 15 15 C -0.14 -2.17 7.92 30.36 0.24 -1.93 15 16 C 0.52 13.36 9.85 87.64 0.86 14.22 15 17 O -0.57 -19.47 18.03 -3.05 -0.05 -19.52 15 18 N -0.74 -19.56 7.24 -455.28 -3.29 -22.86 15 19 H 0.28 15.10 8.31 -92.71 -0.77 14.33 15 20 H 0.39 13.88 5.76 -92.71 -0.53 13.35 15 21 H 0.11 2.22 8.14 -2.38 -0.02 2.20 15 22 H 0.15 2.18 8.14 -2.39 -0.02 2.16 15 23 H 0.15 1.30 8.01 -2.39 -0.02 1.28 15 24 H 0.14 1.44 8.14 -2.38 -0.02 1.42 15 25 H 0.40 11.20 8.96 -92.71 -0.83 10.37 15 Total: -1.00 -78.42 229.57 0.51 -77.91 By element: Atomic # 1 Polarization: 26.16 SS G_CDS: -0.19 Total: 25.97 kcal Atomic # 6 Polarization: 9.99 SS G_CDS: 3.46 Total: 13.45 kcal Atomic # 7 Polarization: -100.81 SS G_CDS: -4.55 Total: -105.37 kcal Atomic # 8 Polarization: -50.95 SS G_CDS: -0.10 Total: -51.05 kcal Atomic # 14 Polarization: 37.19 SS G_CDS: 1.90 Total: 39.09 kcal Total: -78.42 0.51 -77.91 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464724404.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.297 kcal (2) G-P(sol) polarization free energy of solvation -78.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds