Wall clock time and date at job start Mon Mar 30 2020 01:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86796 * 120.00342 * 2 1 4 4 H 1.48497 * 109.47201 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47346 * 300.00568 * 3 2 1 6 6 H 1.48506 * 109.46753 * 60.00668 * 3 2 1 7 7 C 1.38958 * 119.99347 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99408 * 179.97438 * 7 2 1 9 9 N 1.37092 * 120.00096 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99729 * 179.72242 * 9 7 2 11 11 O 1.21293 * 120.00229 * 0.27992 * 10 9 7 12 12 C 1.50703 * 120.00290 * 180.27555 * 10 9 7 13 13 C 1.52990 * 109.47398 * 180.02562 * 12 10 9 14 14 H 1.09005 * 112.42085 * 45.33376 * 13 12 10 15 15 C 1.52883 * 113.05072 * 174.81404 * 13 12 10 16 16 C 1.50377 * 82.51459 * 115.45471 * 15 13 12 17 17 O 1.21283 * 131.83687 * 179.97438 * 16 15 13 18 18 N 1.34602 * 96.31479 * 359.96834 * 16 15 13 19 19 H 0.97004 * 119.99790 * 359.97438 * 1 2 3 20 20 H 0.97001 * 120.00484 * 0.02562 * 9 7 2 21 21 H 1.08998 * 109.46954 * 300.00581 * 12 10 9 22 22 H 1.09002 * 109.46946 * 59.99717 * 12 10 9 23 23 H 1.09000 * 114.37683 * 228.84961 * 15 13 12 24 24 H 1.09000 * 114.38195 * 2.06068 * 15 13 12 25 25 H 0.97008 * 134.66439 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.7082 1.3462 -0.0006 5 1 1.8894 2.3965 -1.2124 6 1 1.8896 2.3963 1.2127 7 6 2.0088 -1.2035 -0.0005 8 1 3.0888 -1.2035 -0.0010 9 7 1.3232 -2.3907 -0.0005 10 6 1.9970 -3.5579 -0.0067 11 8 3.2100 -3.5580 -0.0071 12 6 1.2435 -4.8630 -0.0130 13 6 2.2376 -6.0259 -0.0186 14 1 3.0462 -5.8851 0.6987 15 6 1.5616 -7.3919 0.1019 16 6 2.1288 -7.5751 -1.2787 17 8 2.0761 -8.5026 -2.0583 18 7 2.7143 -6.3659 -1.3599 19 1 -0.4850 0.8401 0.0004 20 1 0.3532 -2.3907 -0.0005 21 1 0.6172 -4.9252 0.8769 22 1 0.6164 -4.9162 -0.9030 23 1 1.9984 -8.0448 0.8576 24 1 0.4730 -7.3534 0.1392 25 1 3.2393 -5.9063 -2.0339 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001464724406.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:04 Heat of formation + Delta-G solvation = -52.850443 kcal Electronic energy + Delta-G solvation = -12121.813436 eV Core-core repulsion = 9715.080173 eV Total energy + Delta-G solvation = -2406.733263 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 198.079 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.80316 -38.15134 -36.31302 -34.02454 -31.40093 -30.12289 -28.26196 -24.95285 -22.16000 -19.68414 -19.30360 -17.98778 -17.06451 -16.35893 -15.88145 -15.45170 -14.51113 -14.12193 -13.92031 -12.91703 -12.85401 -12.32016 -11.92614 -11.71883 -11.41378 -11.21043 -11.05764 -10.40475 -10.29913 -9.88829 -9.61490 -9.01674 -8.51180 -8.06722 -6.50254 -3.91569 2.66959 3.10522 3.22179 3.28877 3.56329 3.81168 4.05986 4.12231 4.58183 4.93608 5.17017 5.20861 5.45333 5.57092 5.77066 5.89450 6.22549 6.31379 6.55692 7.19210 7.47442 7.96332 8.49257 8.50207 9.08308 9.44408 9.94188 10.67140 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.089449 B = 0.007025 C = 0.006840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 312.953949 B = 3984.637876 C = 4092.612474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.024 3.976 3 Si 0.930 3.070 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.303 4.303 8 H 0.104 0.896 9 N -0.559 5.559 10 C 0.437 3.563 11 O -0.598 6.598 12 C -0.142 4.142 13 C 0.148 3.852 14 H 0.105 0.895 15 C -0.176 4.176 16 C 0.516 3.484 17 O -0.537 6.537 18 N -0.723 5.723 19 H 0.272 0.728 20 H 0.393 0.607 21 H 0.096 0.904 22 H 0.085 0.915 23 H 0.118 0.882 24 H 0.119 0.881 25 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.615 -7.720 2.024 8.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.178 4.178 3 Si 0.757 3.243 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.433 4.433 8 H 0.122 0.878 9 N -0.194 5.194 10 C 0.223 3.777 11 O -0.484 6.484 12 C -0.184 4.184 13 C 0.042 3.958 14 H 0.123 0.877 15 C -0.216 4.216 16 C 0.301 3.699 17 O -0.413 6.413 18 N -0.383 5.383 19 H 0.082 0.918 20 H 0.227 0.773 21 H 0.115 0.885 22 H 0.104 0.896 23 H 0.137 0.863 24 H 0.137 0.863 25 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 0.065 -8.005 1.566 8.157 hybrid contribution -0.004 1.315 -0.331 1.356 sum 0.061 -6.690 1.235 6.803 Atomic orbital electron populations 1.69618 1.05981 1.28238 1.50130 1.25292 0.95640 0.99845 0.97069 0.85794 0.79702 0.81029 0.77791 1.19198 1.20699 1.20654 1.19773 0.93429 0.82270 1.47803 0.87819 1.41919 1.09300 1.04741 1.63429 1.19815 0.88259 0.84924 0.84700 1.90524 1.13878 1.87340 1.56696 1.21848 0.98589 0.93914 1.04038 1.21814 0.96209 0.92913 0.84814 0.87714 1.23575 1.03666 0.97468 0.96897 1.21913 0.77957 0.81760 0.88300 1.90698 1.61567 1.36970 1.52054 1.47896 1.54067 1.17140 1.19168 0.91788 0.77326 0.88545 0.89649 0.86344 0.86286 0.73815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.83 13.05 55.50 0.72 -23.11 15 2 C 0.02 0.62 5.50 -17.46 -0.10 0.52 15 3 Si 0.93 20.51 29.55 -169.99 -5.02 15.49 15 4 H -0.27 -5.91 7.11 56.52 0.40 -5.51 15 5 H -0.28 -6.13 7.11 56.52 0.40 -5.73 15 6 H -0.28 -6.09 7.11 56.52 0.40 -5.69 15 7 C -0.30 -8.18 9.68 -14.93 -0.14 -8.33 15 8 H 0.10 2.94 7.16 -52.49 -0.38 2.57 15 9 N -0.56 -13.49 5.29 -10.96 -0.06 -13.55 15 10 C 0.44 9.51 7.78 -10.98 -0.09 9.42 15 11 O -0.60 -14.97 15.35 5.55 0.09 -14.89 15 12 C -0.14 -2.16 5.59 -27.89 -0.16 -2.32 15 13 C 0.15 2.03 3.72 -80.35 -0.30 1.73 15 14 H 0.10 1.52 7.71 -51.93 -0.40 1.11 15 15 C -0.18 -1.88 8.14 -28.10 -0.23 -2.11 15 16 C 0.52 7.71 9.37 -23.49 -0.22 7.49 15 17 O -0.54 -9.99 18.03 5.56 0.10 -9.89 15 18 N -0.72 -10.72 7.45 -76.41 -0.57 -11.29 15 19 H 0.27 6.82 8.31 -40.82 -0.34 6.48 15 20 H 0.39 9.09 7.90 -40.82 -0.32 8.77 15 21 H 0.10 1.21 8.14 -51.93 -0.42 0.79 15 22 H 0.09 1.23 8.14 -51.93 -0.42 0.81 15 23 H 0.12 0.99 8.14 -51.93 -0.42 0.57 15 24 H 0.12 1.03 8.00 -51.93 -0.42 0.62 15 25 H 0.42 6.23 8.96 -40.82 -0.37 5.87 15 LS Contribution 232.29 15.07 3.50 3.50 Total: -1.00 -31.93 232.29 -4.75 -36.68 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -2.28 Total: 10.64 kcal Atomic # 6 Polarization: 7.64 SS G_CDS: -1.23 Total: 6.41 kcal Atomic # 7 Polarization: -48.05 SS G_CDS: 0.10 Total: -47.95 kcal Atomic # 8 Polarization: -24.96 SS G_CDS: 0.19 Total: -24.77 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -31.93 -4.75 -36.68 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464724406.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.168 kcal (2) G-P(sol) polarization free energy of solvation -31.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds